Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Forward (+)

61092068 .. 61092502

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00328190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGAGGAGGGTGCACCTCGGAGCAAATCTATGGTGGGATTGAACAAATACATTGTTTCTCTCATCGCCATCTTAGGCTTTTGCCTCCAACTGATGTTTGCACATTCGTCTCCAGACTACAGCAGTAGACTATTGATGAGGCTGTTTGTTATCGACGTATCGACTTACTTCGGGTCAATAGGTGTCATGATACTCCAAACTGATCACAGTACAGCAGACTTTCGTAAATTCATGAATAGGATTAGCATCTTGTTGGGAACTTTTGCTTCTATTTTAGAATTGCTCATCCTCGTTCCAGCTTTTGGATGGCTCGTTCTCTTCTCCTGGTGCATCTGTTTTGTTAACGTTGTGAGCAAGTCATACCAATACTTGAAAACACTATGTGAAAGTGCGGTTTCAGCTCTTGTTCTAGCCTCTGGCGAATTGAAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

144

Amino Acids

16.03

Weight (kDa)

7.66

Isoelectric Point (pI)

36.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	302
AccI	GTMKAC	1 cut(s)	127
AciI	CCGC	1 cut(s)	392
AclI	AACGTT	1 cut(s)	345
AcsI	RAATTY	1 cut(s)	227
AdeI	CACNNNGTG	1 cut(s)	383
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	302
AgsI	TTSAA	3 cut(s)	43, 373, 427
AjnI	CCWGG	1 cut(s)	323
AloI	GAACNNNNNNTCC	2 cut(s)	297, 329
AluBI	AGCT	2 cut(s)	299, 401
AluI	AGCT	2 cut(s)	299, 401
Alw21I	GWGCWC	1 cut(s)	16
Alw26I	GTCTC	1 cut(s)	114
Alw44I	GTGCAC	1 cut(s)	12
ApaLI	GTGCAC	1 cut(s)	12
ApoI	RAATTY	1 cut(s)	227
BaeGI	GKGCMC	1 cut(s)	16
Bbv12I	GWGCWC	1 cut(s)	16
BccI	CCATC	2 cut(s)	77, 300
BciT130I	CCWGG	1 cut(s)	325
BclI	TGATCA	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	1 cut(s)	410
BfmI	CTRYAG	1 cut(s)	118
Bme1390I	CCNGG	1 cut(s)	325
BmrFI	CCNGG	1 cut(s)	325
BmsI	GCATC	2 cut(s)	255, 339
BpmI	CTGGAG	1 cut(s)	96
BsaBI	GATNNNNATC	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse8I	GATNNNNATC	1 cut(s)	245
BseBI	CCWGG	1 cut(s)	325
BseDI	CCNNGG	1 cut(s)	17
BseGI	GGATG	2 cut(s)	285, 311
BseJI	GATNNNNATC	1 cut(s)	245
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	16
BslI	CCNNNNNNNGG	1 cut(s)	302
BsmAI	GTCTC	1 cut(s)	114
BsmBI	CGTCTC	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	1 cut(s)	202
BspACI	CCGC	1 cut(s)	392
BspHI	TCATGA	2 cut(s)	186, 231
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	1 cut(s)	202
Bst2UI	CCWGG	1 cut(s)	325
Bst4CI	ACNGT	1 cut(s)	209
Bst6I	CTCTTC	1 cut(s)	323
BstDEI	CTNAG	1 cut(s)	73
BstF5I	GGATG	2 cut(s)	285, 311
BstKTI	GATC	1 cut(s)	205
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstNI	CCWGG	1 cut(s)	325
BstSCI	CCNGG	1 cut(s)	323
BstSFI	CTRYAG	1 cut(s)	118
BstSLI	GKGCMC	1 cut(s)	16
BtgZI	GCGATG	1 cut(s)	49
BtsCI	GGATG	2 cut(s)	285, 311
CciI	TCATGA	2 cut(s)	186, 231
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	2 cut(s)	187, 232
CviJI	RGCY	6 cut(s)	78, 142, 299, 310, 401, 413
CviKI_1	RGCY	6 cut(s)	78, 142, 299, 310, 401, 413
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	1 cut(s)	73
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
DraIII	CACNNNGTG	1 cut(s)	383
Eam1104I	CTCTTC	1 cut(s)	323
EarI	CTCTTC	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	323
Esp3I	CGTCTC	1 cut(s)	114
FaeI	CATG	2 cut(s)	190, 235
FaiI	YATR	5 cut(s)	32, 188, 233, 361, 382
FatI	CATG	2 cut(s)	186, 231
FbaI	TGATCA	1 cut(s)	202
FblI	GTMKAC	1 cut(s)	127
FokI	GGATG	2 cut(s)	272, 318
FspBI	CTAG	1 cut(s)	410
GsuI	CTGGAG	1 cut(s)	96
Hin1II	CATG	2 cut(s)	190, 235
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HpaI	GTTAAC	1 cut(s)	343
Hpy166II	GTNNAC	3 cut(s)	14, 128, 343
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	3 cut(s)	113, 187, 232
Hpy8I	GTNNAC	3 cut(s)	14, 128, 343
Hpy99I	CGWCG	1 cut(s)	158
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4IV	ACGT	2 cut(s)	156, 345
HpyCH4V	TGCA	3 cut(s)	14, 101, 330
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	1 cut(s)	73
HpySE526I	ACGT	2 cut(s)	156, 345
Hsp92II	CATG	2 cut(s)	190, 235
Ksp22I	TGATCA	1 cut(s)	202
KspAI	GTTAAC	1 cut(s)	343
Kzo9I	GATC	1 cut(s)	202
LmnI	GCTCC	1 cut(s)	21
LpnPI	CCDG	5 cut(s)	126, 309, 310, 337, 402
LweI	GCATC	2 cut(s)	255, 339
MaeI	CTAG	1 cut(s)	410
MaeII	ACGT	2 cut(s)	156, 345
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	1 cut(s)	310
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	3 cut(s)	227, 278, 422
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	5 cut(s)	27, 95, 132, 299, 424
MseI	TTAA	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	325
MwoI	GCNNNNNNNGC	1 cut(s)	398
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	2 cut(s)	190, 235
PagI	TCATGA	2 cut(s)	186, 231
PflMI	CCANNNNNTGG	1 cut(s)	302
Psp1406I	AACGTT	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	323
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	342
Sau3AI	GATC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	325
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	6 cut(s)	19, 159, 184, 301, 348, 403
SfaNI	GCATC	2 cut(s)	255, 339
SfcI	CTRYAG	1 cut(s)	118
Sse9I	AATT	3 cut(s)	227, 278, 422
SsiI	CCGC	1 cut(s)	392
SspMI	CTAG	1 cut(s)	410
StyD4I	CCNGG	1 cut(s)	323
TaaI	ACNGT	1 cut(s)	209
TaiI	ACGT	2 cut(s)	159, 348
TaqI	TCGA	2 cut(s)	153, 161
TasI	AATT	3 cut(s)	227, 278, 422
TatI	WGTACW	1 cut(s)	209
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TspDTI	ATGAA	2 cut(s)	220, 248
Van91I	CCANNNNNTGG	1 cut(s)	302
VneI	GTGCAC	1 cut(s)	12
XapI	RAATTY	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	303
XmiI	GTMKAC	1 cut(s)	127
XspI	CTAG	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.