Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Forward (+)

4183004 .. 4190668

Gene Structure 7665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG027600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTTTGCACATTCGTCTCCAGACTACAGCAGTAGACTATTGATGAGGCTGTTTGTTATCGACGTATCGGCTTACTTCGGGTCAATAGGTGTCATGATACTCCAAATTGATCACAGTACAACAGACTTTCGTAAATTCATGAATAGGACTAGCATCTTGTTGGGAACTTTTGCTTCCATTTTAGAACTGCTCATCCTCGTTCCAGCTTTTGGATGGCTCGTTCTCTTCTCCTGGTGCATCTGTTTTGTTAGCGTTGTGAGCAAGTCATACCAATACTTGAAAACACTATGTGAAAGTGCGGTTTCAGCTCTTGTTCTAGCCTCTGGAGACTTGAAAGATAAGCTGAACGCGATGAATGGCCACTTGATGAAAAATTTTAAATTTTCAGGGATATTTGGTGCCGAAAAACTTAAAAAGCTTATCAGAATTTGCCGCTGGACGGAGCATGAAGCCCAAAACCAGAACCAGATCATCGATGGGTTACCTAAGAAAAATAGCGGCGCTAAAGATAAAAGCTGCAATCTTGACAAAGCTTCACCTATAAAATCTGGAAACTTTGCTCAAATTCCATCATGGGTCTCTTTAAAATCCTCTGCCATTGTTGAATACCCAACAATTACAGATTGGGCAAGTCGAAAACGTCCACTTGATTTCATTAATGAAACAGAGGAAGATGAAATAAGCCCGCGAATTTTTGCAGCAAATGAACTTGTTTGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

240

Amino Acids

26.96

Weight (kDa)

8.84

Isoelectric Point (pI)

27.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	398
AccB7I	CCANNNNNTGG	1 cut(s)	209
AccI	GTMKAC	1 cut(s)	34
AccII	CGCG	2 cut(s)	350, 688
AciI	CCGC	4 cut(s)	299, 433, 498, 686
AcoI	YGGCCR	1 cut(s)	358
AcsI	RAATTY	6 cut(s)	134, 373, 380, 426, 564, 690
AdeI	CACNNNGTG	1 cut(s)	290
AfaI	GTAC	1 cut(s)	118
AfiI	CCNNNNNNNGG	2 cut(s)	209, 439
AgsI	TTSAA	3 cut(s)	280, 334, 605
AjnI	CCWGG	1 cut(s)	230
AloI	GAACNNNNNNTCC	4 cut(s)	177, 204, 209, 236
AluBI	AGCT	6 cut(s)	206, 308, 343, 418, 516, 533
AluI	AGCT	6 cut(s)	206, 308, 343, 418, 516, 533
Alw26I	GTCTC	3 cut(s)	21, 321, 583
AoxI	GGCC	1 cut(s)	358
ApeKI	GCWGC	2 cut(s)	516, 698
ApoI	RAATTY	6 cut(s)	134, 373, 380, 426, 564, 690
AseI	ATTAAT	1 cut(s)	657
AspLEI	GCGC	1 cut(s)	503
AsuHPI	GGTGA	1 cut(s)	528
BalI	TGGCCA	1 cut(s)	360
BanI	GGYRCC	1 cut(s)	398
BbvI	GCAGC	2 cut(s)	503, 710
BccI	CCATC	3 cut(s)	207, 470, 577
BciT130I	CCWGG	1 cut(s)	232
BclI	TGATCA	1 cut(s)	109
BcoDI	GTCTC	3 cut(s)	21, 321, 583
BfaI	CTAG	2 cut(s)	150, 317
BfmI	CTRYAG	1 cut(s)	25
BfoI	RGCGCY	1 cut(s)	504
BisI	GCNGC	4 cut(s)	433, 499, 517, 699
BlsI	GCNGC	4 cut(s)	434, 500, 518, 700
Bme1390I	CCNGG	1 cut(s)	232
BmiI	GGNNCC	1 cut(s)	400
BmrFI	CCNGG	1 cut(s)	232
BmsI	GCATC	2 cut(s)	162, 246
BpmI	CTGGAG	1 cut(s)	345
Bsa29I	ATCGAT	1 cut(s)	474
BsaI	GGTCTC	1 cut(s)	583
Bsc4I	CCNNNNNNNGG	2 cut(s)	209, 439
BseBI	CCWGG	1 cut(s)	232
BseCI	ATCGAT	1 cut(s)	474
BseGI	GGATG	2 cut(s)	192, 218
BseLI	CCNNNNNNNGG	2 cut(s)	209, 439
BseXI	GCAGC	2 cut(s)	503, 710
Bsh1236I	CGCG	2 cut(s)	350, 688
BshFI	GGCC	1 cut(s)	360
BshNI	GGYRCC	1 cut(s)	398
BshVI	ATCGAT	1 cut(s)	474
BslI	CCNNNNNNNGG	2 cut(s)	209, 439
BsmAI	GTCTC	3 cut(s)	21, 321, 583
BsmBI	CGTCTC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	360
Bso31I	GGTCTC	1 cut(s)	583
Bsp143I	GATC	2 cut(s)	109, 468
BspACI	CCGC	4 cut(s)	299, 433, 498, 686
BspANI	GGCC	1 cut(s)	360
BspDI	ATCGAT	1 cut(s)	474
BspFNI	CGCG	2 cut(s)	350, 688
BspHI	TCATGA	2 cut(s)	93, 138
BspLI	GGNNCC	1 cut(s)	400
BspT107I	GGYRCC	1 cut(s)	398
BspTNI	GGTCTC	1 cut(s)	583
BssMI	GATC	2 cut(s)	109, 468
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	116
Bst6I	CTCTTC	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	686
BstDEI	CTNAG	1 cut(s)	486
BstEII	GGTNACC	1 cut(s)	480
BstF5I	GGATG	2 cut(s)	192, 218
BstFNI	CGCG	2 cut(s)	350, 688
BstH2I	RGCGCY	1 cut(s)	504
BstHHI	GCGC	1 cut(s)	503
BstKTI	GATC	2 cut(s)	112, 471
BstMAI	GTCTC	3 cut(s)	21, 321, 583
BstMBI	GATC	2 cut(s)	109, 468
BstMWI	GCNNNNNNNGC	2 cut(s)	258, 305
BstNI	CCWGG	1 cut(s)	232
BstPI	GGTNACC	1 cut(s)	480
BstSCI	CCNGG	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	25
BstUI	CGCG	2 cut(s)	350, 688
BstV1I	GCAGC	2 cut(s)	503, 710
Bsu15I	ATCGAT	1 cut(s)	474
BsuRI	GGCC	1 cut(s)	360
BsuTUI	ATCGAT	1 cut(s)	474
BtgZI	GCGATG	1 cut(s)	365
BtsCI	GGATG	2 cut(s)	192, 218
Cac8I	GCNNGC	1 cut(s)	686
CciI	TCATGA	2 cut(s)	93, 138
CfoI	GCGC	1 cut(s)	503
ClaI	ATCGAT	1 cut(s)	474
Csp6I	GTAC	1 cut(s)	117
CviAII	CATG	4 cut(s)	94, 139, 446, 573
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	1 cut(s)	486
DpnI	GATC	2 cut(s)	111, 470
DpnII	GATC	2 cut(s)	109, 468
DraI	TTTAAA	2 cut(s)	379, 585
DraIII	CACNNNGTG	1 cut(s)	290
EaeI	YGGCCR	1 cut(s)	358
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Eco31I	GGTCTC	1 cut(s)	583
Eco91I	GGTNACC	1 cut(s)	480
EcoO65I	GGTNACC	1 cut(s)	480
EcoRII	CCWGG	1 cut(s)	230
Esp3I	CGTCTC	1 cut(s)	21
FaeI	CATG	4 cut(s)	97, 142, 449, 576
FaiI	YATR	7 cut(s)	95, 140, 268, 289, 447, 542, 574
FatI	CATG	4 cut(s)	93, 138, 445, 572
FauI	CCCGC	1 cut(s)	693
FbaI	TGATCA	1 cut(s)	109
FblI	GTMKAC	1 cut(s)	34
Fnu4HI	GCNGC	4 cut(s)	433, 499, 517, 699
FokI	GGATG	2 cut(s)	179, 225
Fsp4HI	GCNGC	4 cut(s)	433, 499, 517, 699
FspBI	CTAG	2 cut(s)	150, 317
GlaI	GCGC	1 cut(s)	502
GluI	GCNGC	4 cut(s)	433, 499, 517, 699
GsuI	CTGGAG	1 cut(s)	345
HaeII	RGCGCY	1 cut(s)	504
HaeIII	GGCC	1 cut(s)	360
HhaI	GCGC	1 cut(s)	503
Hin1II	CATG	4 cut(s)	97, 142, 449, 576
Hin6I	GCGC	1 cut(s)	501
HinP1I	GCGC	1 cut(s)	501
HindIII	AAGCTT	2 cut(s)	416, 531
HphI	GGTGA	1 cut(s)	528
Hpy166II	GTNNAC	2 cut(s)	35, 644
Hpy188I	TCNGA	1 cut(s)	425
Hpy188III	TCNNGA	6 cut(s)	20, 94, 139, 324, 524, 549
Hpy8I	GTNNAC	2 cut(s)	35, 644
Hpy99I	CGWCG	1 cut(s)	65
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4IV	ACGT	2 cut(s)	63, 640
HpyCH4V	TGCA	5 cut(s)	8, 237, 519, 698, 717
HpyF10VI	GCNNNNNNNGC	2 cut(s)	258, 305
HpyF3I	CTNAG	1 cut(s)	486
HpySE526I	ACGT	2 cut(s)	63, 640
Hsp92II	CATG	4 cut(s)	97, 142, 449, 576
HspAI	GCGC	1 cut(s)	501
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	2 cut(s)	109, 468
LmnI	GCTCC	1 cut(s)	442
Lsp1109I	GCAGC	2 cut(s)	503, 710
LweI	GCATC	2 cut(s)	162, 246
MaeI	CTAG	2 cut(s)	150, 317
MaeII	ACGT	2 cut(s)	63, 640
MaeIII	GTNAC	1 cut(s)	480
MalI	GATC	2 cut(s)	111, 470
MboI	GATC	2 cut(s)	109, 468
MboII	GAAGA	2 cut(s)	217, 683
MlsI	TGGCCA	1 cut(s)	360
MluCI	AATT	8 cut(s)	105, 134, 373, 380, 426, 564, 615, 690
MluNI	TGGCCA	1 cut(s)	360
MnlI	CCTC	5 cut(s)	39, 206, 331, 601, 661
Mox20I	TGGCCA	1 cut(s)	360
MscI	TGGCCA	1 cut(s)	360
MseI	TTAA	4 cut(s)	378, 411, 584, 657
Msp20I	TGGCCA	1 cut(s)	360
MspA1I	CMGCKG	1 cut(s)	435
MspR9I	CCNGG	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	232
MvnI	CGCG	2 cut(s)	350, 688
MwoI	GCNNNNNNNGC	2 cut(s)	258, 305
NdeII	GATC	2 cut(s)	109, 468
NlaIII	CATG	4 cut(s)	97, 142, 449, 576
NlaIV	GGNNCC	1 cut(s)	400
PagI	TCATGA	2 cut(s)	93, 138
PflMI	CCANNNNNTGG	1 cut(s)	209
PkrI	GCNGC	4 cut(s)	434, 500, 518, 700
PshBI	ATTAAT	1 cut(s)	657
Psp6I	CCWGG	1 cut(s)	230
PspEI	GGTNACC	1 cut(s)	480
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	400
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
SaqAI	TTAA	4 cut(s)	378, 411, 584, 657
SatI	GCNGC	4 cut(s)	433, 499, 517, 699
Sau3AI	GATC	2 cut(s)	109, 468
ScrFI	CCNGG	1 cut(s)	232
SfaNI	GCATC	2 cut(s)	162, 246
SfcI	CTRYAG	1 cut(s)	25
Sse9I	AATT	8 cut(s)	105, 134, 373, 380, 426, 564, 615, 690
SsiI	CCGC	4 cut(s)	299, 433, 498, 686
SspMI	CTAG	2 cut(s)	150, 317
StyD4I	CCNGG	1 cut(s)	230
TaaI	ACNGT	1 cut(s)	116
TaiI	ACGT	2 cut(s)	66, 643
TaqI	TCGA	3 cut(s)	60, 474, 634
TasI	AATT	8 cut(s)	105, 134, 373, 380, 426, 564, 615, 690
TatI	WGTACW	1 cut(s)	116
TauI	GCSGC	2 cut(s)	435, 501
Tru1I	TTAA	4 cut(s)	378, 411, 584, 657
Tru9I	TTAA	4 cut(s)	378, 411, 584, 657
TseI	GCWGC	2 cut(s)	516, 698
TspDTI	ATGAA	9 cut(s)	127, 155, 368, 383, 462, 643, 675, 690, 720
TspGWI	ACGGA	1 cut(s)	455
Van91I	CCANNNNNTGG	1 cut(s)	209
VspI	ATTAAT	1 cut(s)	657
XapI	RAATTY	6 cut(s)	134, 373, 380, 426, 564, 690
XcmI	CCANNNNNNNNNTGG	2 cut(s)	210, 473
XmiI	GTMKAC	1 cut(s)	34
XspI	CTAG	2 cut(s)	150, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.