Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Reverse (-)

54671323 .. 54672281

Gene Structure 959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009568

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGAGAGAGCTGGCCACCAGAATGCCAATGCAAGACTACAGAGACCATGGGAGTCATTGCATACATTCATTTTGGCTCTCAACGGAGTCCTAGGCTTCTGCCTCCAACTCATGTCTCCATTTGCGACCGCCTACGGCACTGTGATGATGAACCTCTTCATTATTGTGTCATGCTTTTATAGCGCCACTTTAGTTGTGATGGGAATCATGGCCGCTCGCAATAATATAGATTTCGAAGATGTGATGAACAAAATTAGCCTCTTACTTGGAAGTCTGTCCCTGATTTTAGAGTTGCTCGTCCTTATTCCACCTTTCGGATGGATCGTACTTTTCTTCTGGAGCATCTGGCTCTTATGCTTCCTGATTAAGTATTACTCTTCTTTGAACACACTCTACCAAAGTGCAGTTGCACTTGTTGTTGAAGACTATGGAGAATTGAAACAGAAGCTGGTTGATTTGAATCGTCGCTTGATGGACAGTGATGCAATTGCACCACTTGGTCGTGCCTATCAGACATTGAAGGACCTGATCATCAGGAATGACGGGCGCATGACAGGCCATGAAGCCCAGAACCAGAACAACACCACTGAGCTACGGCTACCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

203

Amino Acids

22.89

Weight (kDa)

6.28

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	215
AciI	CCGC	2 cut(s)	129, 213
AclWI	GGATC	1 cut(s)	329
AcoI	YGGCCR	2 cut(s)	13, 210
AfaI	GTAC	1 cut(s)	327
AfiI	CCNNNNNNNGG	1 cut(s)	314
AgsI	TTSAA	5 cut(s)	385, 422, 439, 460, 520
AluBI	AGCT	3 cut(s)	11, 448, 592
AluI	AGCT	3 cut(s)	11, 448, 592
Alw26I	GTCTC	2 cut(s)	37, 120
AlwI	GGATC	1 cut(s)	329
AlwNI	CAGNNNCTG	1 cut(s)	448
AoxI	GGCC	3 cut(s)	13, 210, 556
Asp700I	GAANNNNTTC	1 cut(s)	155
AspA2I	CCTAGG	1 cut(s)	91
AspLEI	GCGC	2 cut(s)	185, 549
AspS9I	GGNCC	1 cut(s)	523
AsuII	TTCGAA	1 cut(s)	234
AvaII	GGWCC	1 cut(s)	523
AvrII	CCTAGG	1 cut(s)	91
BalI	TGGCCA	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	429
BccI	CCATC	3 cut(s)	193, 312, 466
BceAI	ACGGC	1 cut(s)	151
BclI	TGATCA	1 cut(s)	528
BcoDI	GTCTC	2 cut(s)	37, 120
BfaI	CTAG	1 cut(s)	92
BfmI	CTRYAG	1 cut(s)	38
BfoI	RGCGCY	1 cut(s)	186
BisI	GCNGC	1 cut(s)	213
BlnI	CCTAGG	1 cut(s)	91
BlsI	GCNGC	1 cut(s)	214
Bme18I	GGWCC	1 cut(s)	523
BmgT120I	GGNCC	1 cut(s)	523
BmsI	GCATC	2 cut(s)	351, 472
BpiI	GAAGAC	1 cut(s)	429
BpmI	CTGGAG	1 cut(s)	358
Bpu14I	TTCGAA	1 cut(s)	234
BsaBI	GATNNNNATC	2 cut(s)	203, 459
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	2 cut(s)	47, 91
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse3DI	GCAATG	1 cut(s)	56
Bse8I	GATNNNNATC	2 cut(s)	203, 459
BseDI	CCNNGG	2 cut(s)	47, 91
BseGI	GGATG	1 cut(s)	323
BseJI	GATNNNNATC	2 cut(s)	203, 459
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMI	GCAATG	1 cut(s)	56
BseMII	CTCAG	1 cut(s)	579
BsgI	GTGCAG	1 cut(s)	423
Bsh1285I	CGRYCG	1 cut(s)	129
BshFI	GGCC	3 cut(s)	15, 212, 558
BsiEI	CGRYCG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmAI	GTCTC	2 cut(s)	37, 120
BsmFI	GGGAC	1 cut(s)	262
BsmI	GAATGC	1 cut(s)	28
BsnI	GGCC	3 cut(s)	15, 212, 558
Bso31I	GGTCTC	1 cut(s)	37
Bsp119I	TTCGAA	1 cut(s)	234
Bsp143I	GATC	2 cut(s)	321, 528
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	2 cut(s)	129, 213
BspANI	GGCC	3 cut(s)	15, 212, 558
BspCNI	CTCAG	1 cut(s)	580
BspPI	GGATC	1 cut(s)	329
BspT104I	TTCGAA	1 cut(s)	234
BspTNI	GGTCTC	1 cut(s)	37
BsrBI	CCGCTC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	56
BssECI	CCNNGG	2 cut(s)	47, 91
BssMI	GATC	2 cut(s)	321, 528
BssT1I	CCWWGG	2 cut(s)	47, 91
Bst4CI	ACNGT	2 cut(s)	142, 479
Bst6I	CTCTTC	2 cut(s)	161, 382
BstBI	TTCGAA	1 cut(s)	234
BstC8I	GCNNGC	2 cut(s)	13, 217
BstDEI	CTNAG	1 cut(s)	588
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	323
BstH2I	RGCGCY	1 cut(s)	186
BstHHI	GCGC	2 cut(s)	185, 549
BstKTI	GATC	2 cut(s)	324, 531
BstMAI	GTCTC	2 cut(s)	37, 120
BstMBI	GATC	2 cut(s)	321, 528
BstMCI	CGRYCG	1 cut(s)	129
BstMWI	GCNNNNNNNGC	2 cut(s)	180, 555
BstSFI	CTRYAG	1 cut(s)	38
BstV2I	GAAGAC	1 cut(s)	429
BsuRI	GGCC	3 cut(s)	15, 212, 558
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	323
BtsIMutI	CAGTG	3 cut(s)	138, 484, 585
Cac8I	GCNNGC	2 cut(s)	13, 217
CaiI	CAGNNNCTG	1 cut(s)	448
CfoI	GCGC	2 cut(s)	185, 549
Cfr13I	GGNCC	1 cut(s)	523
Csp6I	GTAC	1 cut(s)	326
CspCI	CAANNNNNGTGG	2 cut(s)	175, 210
CviAII	CATG	6 cut(s)	48, 112, 171, 208, 550, 560
CviQI	GTAC	1 cut(s)	326
DdeI	CTNAG	1 cut(s)	588
DpnI	GATC	2 cut(s)	323, 530
DpnII	GATC	2 cut(s)	321, 528
EaeI	YGGCCR	2 cut(s)	13, 210
Eam1104I	CTCTTC	2 cut(s)	161, 382
EarI	CTCTTC	2 cut(s)	161, 382
Eco130I	CCWWGG	2 cut(s)	47, 91
Eco31I	GGTCTC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	523
EcoO109I	RGGNCCY	1 cut(s)	523
EcoT14I	CCWWGG	2 cut(s)	47, 91
ErhI	CCWWGG	2 cut(s)	47, 91
FaeI	CATG	6 cut(s)	51, 115, 174, 211, 553, 563
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	6 cut(s)	47, 111, 170, 207, 549, 559
FbaI	TGATCA	1 cut(s)	528
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	1 cut(s)	330
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	1 cut(s)	92
GlaI	GCGC	2 cut(s)	184, 548
GluI	GCNGC	1 cut(s)	213
GsuI	CTGGAG	1 cut(s)	358
HaeII	RGCGCY	1 cut(s)	186
HaeIII	GGCC	3 cut(s)	15, 212, 558
HhaI	GCGC	2 cut(s)	185, 549
Hin1II	CATG	6 cut(s)	51, 115, 174, 211, 553, 563
Hin6I	GCGC	2 cut(s)	183, 547
HinP1I	GCGC	2 cut(s)	183, 547
HinfI	GANTC	4 cut(s)	53, 87, 204, 460
Hpy188I	TCNGA	2 cut(s)	317, 513
Hpy188III	TCNNGA	3 cut(s)	337, 361, 535
Hpy99I	CGWCG	1 cut(s)	468
HpyAV	CCTTC	1 cut(s)	514
HpyCH4III	ACNGT	2 cut(s)	142, 479
HpyCH4V	TGCA	6 cut(s)	32, 61, 404, 410, 485, 491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	180, 555
HpyF3I	CTNAG	1 cut(s)	588
Hsp92II	CATG	6 cut(s)	51, 115, 174, 211, 553, 563
HspAI	GCGC	2 cut(s)	183, 547
Ksp22I	TGATCA	1 cut(s)	528
Kzo9I	GATC	2 cut(s)	321, 528
LmnI	GCTCC	1 cut(s)	339
LweI	GCATC	2 cut(s)	351, 472
MaeI	CTAG	1 cut(s)	92
MalI	GATC	2 cut(s)	323, 530
MbiI	CCGCTC	1 cut(s)	215
MboI	GATC	2 cut(s)	321, 528
MboII	GAAGA	5 cut(s)	148, 248, 325, 369, 434
MfeI	CAATTG	1 cut(s)	486
MlsI	TGGCCA	1 cut(s)	15
MluCI	AATT	3 cut(s)	252, 434, 486
MluNI	TGGCCA	1 cut(s)	15
MlyI	GAGTC	2 cut(s)	62, 96
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	3 cut(s)	113, 164, 269
Mox20I	TGGCCA	1 cut(s)	15
MroXI	GAANNNNTTC	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	15
MseI	TTAA	2 cut(s)	366, 607
MslI	CAYNNNNRTG	3 cut(s)	21, 143, 164
Msp20I	TGGCCA	1 cut(s)	15
MunI	CAATTG	1 cut(s)	486
Mva1269I	GAATGC	1 cut(s)	28
MwoI	GCNNNNNNNGC	2 cut(s)	180, 555
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	2 cut(s)	321, 528
NlaIII	CATG	6 cut(s)	51, 115, 174, 211, 553, 563
NspV	TTCGAA	1 cut(s)	234
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PctI	GAATGC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	2 cut(s)	204, 460
PkrI	GCNGC	1 cut(s)	214
PleI	GAGTC	2 cut(s)	61, 95
PpsI	GAGTC	2 cut(s)	61, 95
PpuMI	RGGWCCY	1 cut(s)	523
Psp5II	RGGWCCY	1 cut(s)	523
PspPI	GGNCC	1 cut(s)	523
PspPPI	RGGWCCY	1 cut(s)	523
PsrI	GAACNNNNNNTAC	2 cut(s)	377, 409
PstNI	CAGNNNCTG	1 cut(s)	448
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
RseI	CAYNNNNRTG	3 cut(s)	21, 143, 164
SaqAI	TTAA	2 cut(s)	366, 607
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	2 cut(s)	321, 528
Sau96I	GGNCC	1 cut(s)	523
SchI	GAGTC	2 cut(s)	62, 96
SetI	ASST	7 cut(s)	13, 156, 313, 450, 528, 594, 604
SfaNI	GCATC	2 cut(s)	351, 472
SfcI	CTRYAG	1 cut(s)	38
SfuI	TTCGAA	1 cut(s)	234
SinI	GGWCC	1 cut(s)	523
SmiMI	CAYNNNNRTG	3 cut(s)	21, 143, 164
Sse9I	AATT	3 cut(s)	252, 434, 486
SsiI	CCGC	2 cut(s)	129, 213
SspMI	CTAG	1 cut(s)	92
StyI	CCWWGG	2 cut(s)	47, 91
TaaI	ACNGT	2 cut(s)	142, 479
TaqI	TCGA	1 cut(s)	234
TasI	AATT	3 cut(s)	252, 434, 486
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	2 cut(s)	204, 460
Tru1I	TTAA	2 cut(s)	366, 607
Tru9I	TTAA	2 cut(s)	366, 607
TscAI	CASTG	3 cut(s)	145, 484, 592
TspDTI	ATGAA	5 cut(s)	58, 148, 164, 260, 576
TspGWI	ACGGA	1 cut(s)	99
TspRI	CASTG	3 cut(s)	145, 484, 592
VpaK11BI	GGWCC	1 cut(s)	523
XcmI	CCANNNNNNNNNTGG	1 cut(s)	315
XmaJI	CCTAGG	1 cut(s)	91
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.