Rmu_co8319251.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8319251.1
OG0000247
Physical Location & Seq
Reverse (-)
2 .. 471
470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8319251.1_g000001.1.cds

Sequence Viewer

Length: 470 bp
atgggtgttctaggctggctcctccaactgaaatacgtaacagcgagtgcttccccgtttgtgacacactatgttactatgctgatgtttattgtcgttttcattgtttactttggggcattgactgctaaaatattctcccaagctcctaactcggatatggctgagttcatgaccaacattactctcttgtccggaactcttgcctcgattctactattgcacatcctcgttcgagcttttgggtgtttcgctctcctcttgtgggcgatttatcttgttagggacgttgtaactaagaaatcatatagaaaggcactcgttcatgtcttcgacaaagtgaaagtgctgatttatggcccctcagaggagagtaatgctgtgcaacccccaccaattgcagaggtcgcggtaccaatacaagatgccggacaacacaatgtagaagaaagaaaaatggagcagcgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.43

Weight (kDa)

8.71

Isoelectric Point (pI)

41.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 412
AccB1I GGYRCC 1 cut(s) 412
AccII CGCG 1 cut(s) 410
AccIII TCCGGA 1 cut(s) 194
AciI CCGC 1 cut(s) 410
AfaI GTAC 1 cut(s) 414
AfiI CCNNNNNNNGG 2 cut(s) 265, 367
AluBI AGCT 2 cut(s) 146, 239
AluI AGCT 2 cut(s) 146, 239
Aor13HI TCCGGA 1 cut(s) 194
AoxI GGCC 1 cut(s) 358
ApeKI GCWGC 1 cut(s) 463
Asp718I GGTACC 1 cut(s) 412
AspS9I GGNCC 1 cut(s) 359
BanI GGYRCC 1 cut(s) 412
BbsI GAAGAC 1 cut(s) 322
BfaI CTAG 1 cut(s) 11
BisI GCNGC 1 cut(s) 464
BlsI GCNGC 1 cut(s) 465
BmgT120I GGNCC 1 cut(s) 359
BmiI GGNNCC 3 cut(s) 20, 361, 414
BmsI GCATC 1 cut(s) 415
BpiI GAAGAC 1 cut(s) 322
BsaAI YACGTR 1 cut(s) 37
BsaWI WCCGGW 1 cut(s) 194
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 367
BseAI TCCGGA 1 cut(s) 194
BseGI GGATG 1 cut(s) 225
BseLI CCNNNNNNNGG 2 cut(s) 265, 367
BseMII CTCAG 2 cut(s) 156, 378
BseRI GAGGAG 3 cut(s) 11, 248, 383
Bsh1236I CGCG 1 cut(s) 410
BshFI GGCC 1 cut(s) 360
BshNI GGYRCC 1 cut(s) 412
BsiSI CCGG 2 cut(s) 195, 429
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 2 cut(s) 265, 367
BsmFI GGGAC 1 cut(s) 299
BsnI GGCC 1 cut(s) 360
Bsp13I TCCGGA 1 cut(s) 194
BspACI CCGC 1 cut(s) 410
BspANI GGCC 1 cut(s) 360
BspCNI CTCAG 2 cut(s) 157, 377
BspEI TCCGGA 1 cut(s) 194
BspFNI CGCG 1 cut(s) 410
BspHI TCATGA 1 cut(s) 171
BspLI GGNNCC 3 cut(s) 20, 361, 414
BspT107I GGYRCC 1 cut(s) 412
BstAPI GCANNNNNTGC 1 cut(s) 125
BstBAI YACGTR 1 cut(s) 37
BstC8I GCNNGC 1 cut(s) 17
BstDEI CTNAG 3 cut(s) 165, 297, 364
BstF5I GGATG 1 cut(s) 225
BstFNI CGCG 1 cut(s) 410
BstMWI GCNNNNNNNGC 2 cut(s) 125, 407
BstSNI TACGTA 1 cut(s) 37
BstUI CGCG 1 cut(s) 410
BstV2I GAAGAC 1 cut(s) 322
BsuRI GGCC 1 cut(s) 360
BtsCI GGATG 1 cut(s) 225
Cac8I GCNNGC 1 cut(s) 17
CciI TCATGA 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 359
Csp6I GTAC 1 cut(s) 413
CviAII CATG 2 cut(s) 172, 326
CviJI RGCY 6 cut(s) 15, 19, 146, 164, 239, 360
CviKI_1 RGCY 6 cut(s) 15, 19, 146, 164, 239, 360
CviQI GTAC 1 cut(s) 413
DdeI CTNAG 3 cut(s) 165, 297, 364
Eco105I TACGTA 1 cut(s) 37
FaeI CATG 2 cut(s) 175, 329
FaiI YATR 8 cut(s) 72, 80, 161, 173, 307, 309, 327, 357
FaqI GGGAC 1 cut(s) 299
FatI CATG 2 cut(s) 171, 325
Fnu4HI GCNGC 1 cut(s) 464
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 1 cut(s) 464
FspBI CTAG 1 cut(s) 11
GluI GCNGC 1 cut(s) 464
HaeIII GGCC 1 cut(s) 360
HapII CCGG 2 cut(s) 195, 429
Hin1II CATG 2 cut(s) 175, 329
HinfI GANTC 1 cut(s) 211
HpaII CCGG 2 cut(s) 195, 429
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 157, 367
Hpy188III TCNNGA 2 cut(s) 172, 195
Hpy8I GTNNAC 1 cut(s) 109
HpyCH4IV ACGT 2 cut(s) 36, 288
HpyCH4V TGCA 3 cut(s) 223, 385, 401
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 407
HpyF3I CTNAG 3 cut(s) 165, 297, 364
HpySE526I ACGT 2 cut(s) 36, 288
Hsp92II CATG 2 cut(s) 175, 329
Kpn2I TCCGGA 1 cut(s) 194
KpnI GGTACC 1 cut(s) 416
LmnI GCTCC 3 cut(s) 24, 151, 460
LpnPI CCDG 2 cut(s) 208, 442
LweI GCATC 1 cut(s) 415
MaeI CTAG 1 cut(s) 11
MaeII ACGT 2 cut(s) 36, 288
MaeIII GTNAC 4 cut(s) 37, 61, 73, 292
MboII GAAGA 2 cut(s) 322, 458
MfeI CAATTG 1 cut(s) 396
MluCI AATT 1 cut(s) 396
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 7 cut(s) 32, 217, 239, 269, 361, 373, 397
MroI TCCGGA 1 cut(s) 194
MspI CCGG 2 cut(s) 195, 429
MunI CAATTG 1 cut(s) 396
MvnI CGCG 1 cut(s) 410
MwoI GCNNNNNNNGC 2 cut(s) 125, 407
NlaIII CATG 2 cut(s) 175, 329
NlaIV GGNNCC 3 cut(s) 20, 361, 414
NmuCI GTSAC 1 cut(s) 61
PagI TCATGA 1 cut(s) 171
PfeI GAWTC 1 cut(s) 211
PkrI GCNGC 1 cut(s) 465
Ppu21I YACGTR 1 cut(s) 37
PspN4I GGNNCC 3 cut(s) 20, 361, 414
PspPI GGNCC 1 cut(s) 359
RsaI GTAC 1 cut(s) 414
RsaNI GTAC 1 cut(s) 413
SatI GCNGC 1 cut(s) 464
Sau96I GGNCC 1 cut(s) 359
SetI ASST 5 cut(s) 39, 148, 241, 291, 408
SfaNI GCATC 1 cut(s) 415
SnaBI TACGTA 1 cut(s) 37
Sse9I AATT 1 cut(s) 396
SsiI CCGC 1 cut(s) 410
SspI AATATT 1 cut(s) 135
SspMI CTAG 1 cut(s) 11
TaiI ACGT 2 cut(s) 39, 291
TaqI TCGA 3 cut(s) 209, 235, 333
TasI AATT 1 cut(s) 396
TfiI GAWTC 1 cut(s) 211
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 1 cut(s) 463
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 3 cut(s) 91, 160, 314
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.