Rroxscaffold_2G00084210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000247
Physical Location & Seq
Forward (+)
6701681 .. 6702549
869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00084210.1

Sequence Viewer

Length: 810 bp
ATGTTGGAGGGGGAGAGGAAGGGAACATTTGGAATTTGCACGCTCATTTATACTAGTACTTTGAGGGATGCAATTAGCAGGCCCCAGATTGAGCAGCGACCTCAATTTGGGGAGCTGCAGGGGCTTGAGGAAAGAAGTCTGGCAGTGGGAGGTTGGGGTAAGACCACCACAGCATATGTAAAGACAGACAATTTGTGTGATAAATTGAATCGGACTGAGGACGAGTTAGCGGTGCCATCTCTCCTGCGACAGGCAGGTTATGTAGCTAGGAAGGTGCTGATCATCGATCATCGCAGTTCTATAAGCCCAATGCATAAATGCATATTCTTTCTCATGTCTATGCTAGGAATACTCCTCCAATTGAAGAGCGGAGGAGGAGTTGGAACTGCATCTCTGTTTGTCACAAACTACTACTCTTTACTCACCTTTATTGTCGCCTTACTTGTTTACATCGGGACTTTATTTGCTGTCAAAATACTCCAAGGTGACTCTAATTCTTCAGAGTTGACATCTGAATTCATGAATAACATTAGTATCTTATTCGGAATTCTCGCCTCAACTTTACTATTGCTCATCCTTGTTCCAGTTCTCGGGTATGTTGCTCTAGCCTTCTGGAGCATTTACTTCATAAATTTTGTGATCAAGTCGCGCGAATACTTGGTATCATTGTATGGAAGTGGAGTTGCAGTTCAGGAATTAAAGCAGCTTGCAGGACTTGCTCATGCCTTTCAGAAATTAAAGCAGCTATTCAATATTCGCCCGAACAAGAGCGAAGCCGCAGGCCAGATCAATGGGCTAACAGAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

29.64

Weight (kDa)

8.9

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 232
AccBSI CCGCTC 1 cut(s) 369
AccII CGCG 2 cut(s) 649, 651
AciI CCGC 3 cut(s) 230, 369, 777
AcsI RAATTY 4 cut(s) 33, 515, 546, 631
AcuI CTGAAG 1 cut(s) 483
AfaI GTAC 1 cut(s) 58
AfiI CCNNNNNNNGG 3 cut(s) 107, 250, 590
AgsI TTSAA 3 cut(s) 208, 364, 751
AhlI ACTAGT 1 cut(s) 53
AloI GAACNNNNNNTCC 2 cut(s) 672, 704
AluBI AGCT 4 cut(s) 115, 266, 706, 745
AluI AGCT 4 cut(s) 115, 266, 706, 745
Ama87I CYCGRG 1 cut(s) 590
AoxI GGCC 2 cut(s) 80, 781
ApeKI GCWGC 4 cut(s) 94, 115, 703, 742
ApoI RAATTY 4 cut(s) 33, 515, 546, 631
ArsI GACNNNNNNTTYG 2 cut(s) 175, 207
AspLEI GCGC 1 cut(s) 651
AspS9I GGNCC 1 cut(s) 81
AsuHPI GGTGA 2 cut(s) 415, 497
AvaI CYCGRG 1 cut(s) 590
BaeI ACNNNNGTAYC 2 cut(s) 517, 550
BanI GGYRCC 1 cut(s) 232
BbvI GCAGC 4 cut(s) 102, 106, 715, 754
BccI CCATC 1 cut(s) 244
BclI TGATCA 2 cut(s) 279, 639
BcuI ACTAGT 1 cut(s) 53
BfaI CTAG 4 cut(s) 54, 267, 344, 605
BfmI CTRYAG 1 cut(s) 116
BfuAI ACCTGC 1 cut(s) 245
BisI GCNGC 5 cut(s) 95, 116, 704, 743, 777
BlsI GCNGC 5 cut(s) 96, 117, 705, 744, 778
BmcAI AGTACT 1 cut(s) 58
BmeT110I CYCGRG 1 cut(s) 590
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 2 cut(s) 83, 234
BmsI GCATC 2 cut(s) 58, 398
BpmI CTGGAG 1 cut(s) 634
BpuEI CTTGAG 1 cut(s) 146
Bsa29I ATCGAT 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 481
BsaXI ACNNNNNCTCC 4 cut(s) 363, 393, 672, 702
Bsc4I CCNNNNNNNGG 3 cut(s) 107, 250, 590
Bse1I ACTGG 1 cut(s) 584
BseCI ATCGAT 1 cut(s) 285
BseDI CCNNGG 1 cut(s) 481
BseGI GGATG 2 cut(s) 73, 573
BseLI CCNNNNNNNGG 3 cut(s) 107, 250, 590
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 584
BseRI GAGGAG 3 cut(s) 344, 387, 390
BseXI GCAGC 4 cut(s) 102, 106, 715, 754
Bsh1236I CGCG 2 cut(s) 649, 651
BshFI GGCC 2 cut(s) 82, 783
BshNI GGYRCC 1 cut(s) 232
BshVI ATCGAT 1 cut(s) 285
BsiHKCI CYCGRG 1 cut(s) 590
BslFI GGGAC 1 cut(s) 469
BslI CCNNNNNNNGG 3 cut(s) 107, 250, 590
BsmFI GGGAC 1 cut(s) 469
BsnI GGCC 2 cut(s) 82, 783
BsoBI CYCGRG 1 cut(s) 590
Bsp143I GATC 4 cut(s) 279, 286, 639, 786
BspACI CCGC 3 cut(s) 230, 369, 777
BspANI GGCC 2 cut(s) 82, 783
BspCNI CTCAG 1 cut(s) 208
BspDI ATCGAT 1 cut(s) 285
BspFNI CGCG 2 cut(s) 649, 651
BspHI TCATGA 1 cut(s) 519
BspLI GGNNCC 2 cut(s) 83, 234
BspMAI CTGCAG 1 cut(s) 120
BspMI ACCTGC 1 cut(s) 245
BspQI GCTCTTC 1 cut(s) 359
BspT107I GGYRCC 1 cut(s) 232
BsrBI CCGCTC 1 cut(s) 369
BsrI ACTGG 1 cut(s) 584
BssECI CCNNGG 1 cut(s) 481
BssMI GATC 4 cut(s) 279, 286, 639, 786
BssT1I CCWWGG 1 cut(s) 481
Bst6I CTCTTC 1 cut(s) 359
BstAPI GCANNNNNTGC 1 cut(s) 716
BstC8I GCNNGC 4 cut(s) 41, 80, 708, 781
BstDEI CTNAG 1 cut(s) 216
BstENI CCTNNNNNAGG 1 cut(s) 248
BstF5I GGATG 2 cut(s) 73, 573
BstFNI CGCG 2 cut(s) 649, 651
BstHHI GCGC 1 cut(s) 651
BstKTI GATC 4 cut(s) 282, 289, 642, 789
BstMBI GATC 4 cut(s) 279, 286, 639, 786
BstMWI GCNNNNNNNGC 2 cut(s) 121, 716
BstSFI CTRYAG 1 cut(s) 116
BstUI CGCG 2 cut(s) 649, 651
BstV1I GCAGC 4 cut(s) 102, 106, 715, 754
BstXI CCANNNNNNTGG 1 cut(s) 791
Bsu15I ATCGAT 1 cut(s) 285
BsuRI GGCC 2 cut(s) 82, 783
BsuTUI ATCGAT 1 cut(s) 285
BtgZI GCGATG 1 cut(s) 275
BtsCI GGATG 2 cut(s) 73, 573
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 150
BveI ACCTGC 1 cut(s) 245
Cac8I GCNNGC 4 cut(s) 41, 80, 708, 781
CciI TCATGA 1 cut(s) 519
CfoI GCGC 1 cut(s) 651
Cfr13I GGNCC 1 cut(s) 81
ClaI ATCGAT 1 cut(s) 285
Csp6I GTAC 1 cut(s) 57
CviAII CATG 3 cut(s) 334, 520, 722
CviQI GTAC 1 cut(s) 57
DdeI CTNAG 1 cut(s) 216
DpnI GATC 4 cut(s) 281, 288, 641, 788
DpnII GATC 4 cut(s) 279, 286, 639, 786
Eam1104I CTCTTC 1 cut(s) 359
EarI CTCTTC 1 cut(s) 359
Eco130I CCWWGG 1 cut(s) 481
Eco57I CTGAAG 1 cut(s) 483
Eco88I CYCGRG 1 cut(s) 590
EcoNI CCTNNNNNAGG 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 81
EcoRI GAATTC 2 cut(s) 515, 546
EcoT14I CCWWGG 1 cut(s) 481
EcoT22I ATGCAT 2 cut(s) 315, 323
ErhI CCWWGG 1 cut(s) 481
FaeI CATG 3 cut(s) 337, 523, 725
FaqI GGGAC 1 cut(s) 469
FatI CATG 3 cut(s) 333, 519, 721
FauNDI CATATG 1 cut(s) 175
FbaI TGATCA 2 cut(s) 279, 639
Fnu4HI GCNGC 5 cut(s) 95, 116, 704, 743, 777
FokI GGATG 2 cut(s) 80, 560
Fsp4HI GCNGC 5 cut(s) 95, 116, 704, 743, 777
FspBI CTAG 4 cut(s) 54, 267, 344, 605
GlaI GCGC 1 cut(s) 650
GluI GCNGC 5 cut(s) 95, 116, 704, 743, 777
GsuI CTGGAG 1 cut(s) 634
HaeIII GGCC 2 cut(s) 82, 783
HhaI GCGC 1 cut(s) 651
Hin1II CATG 3 cut(s) 337, 523, 725
Hin6I GCGC 1 cut(s) 649
HinP1I GCGC 1 cut(s) 649
HincII GTYRAC 1 cut(s) 507
HindII GTYRAC 1 cut(s) 507
HinfI GANTC 2 cut(s) 208, 488
HphI GGTGA 2 cut(s) 415, 497
Hpy166II GTNNAC 2 cut(s) 448, 507
Hpy188I TCNGA 5 cut(s) 213, 502, 514, 545, 732
Hpy188III TCNNGA 4 cut(s) 454, 520, 613, 692
Hpy8I GTNNAC 2 cut(s) 448, 507
HpyAV CCTTC 3 cut(s) 13, 265, 619
HpyCH4V TGCA 8 cut(s) 39, 71, 118, 313, 321, 389, 686, 710
HpyF10VI GCNNNNNNNGC 2 cut(s) 121, 716
HpyF3I CTNAG 1 cut(s) 216
Hsp92II CATG 3 cut(s) 337, 523, 725
HspAI GCGC 1 cut(s) 649
Ksp22I TGATCA 2 cut(s) 279, 639
Kzo9I GATC 4 cut(s) 279, 286, 639, 786
LguI GCTCTTC 1 cut(s) 359
LmnI GCTCC 2 cut(s) 112, 615
Lsp1109I GCAGC 4 cut(s) 102, 106, 715, 754
LweI GCATC 2 cut(s) 58, 398
MaeI CTAG 4 cut(s) 54, 267, 344, 605
MaeIII GTNAC 2 cut(s) 400, 485
MalI GATC 4 cut(s) 281, 288, 641, 788
MbiI CCGCTC 1 cut(s) 369
MboI GATC 4 cut(s) 279, 286, 639, 786
MboII GAAGA 2 cut(s) 376, 489
MfeI CAATTG 1 cut(s) 359
MlyI GAGTC 1 cut(s) 482
MmeI TCCRAC 1 cut(s) 361
Mph1103I ATGCAT 2 cut(s) 315, 323
MseI TTAA 3 cut(s) 698, 737, 808
MslI CAYNNNNRTG 1 cut(s) 338
MunI CAATTG 1 cut(s) 359
MvnI CGCG 2 cut(s) 649, 651
MwoI GCNNNNNNNGC 2 cut(s) 121, 716
NdeI CATATG 1 cut(s) 175
NdeII GATC 4 cut(s) 279, 286, 639, 786
NlaIII CATG 3 cut(s) 337, 523, 725
NlaIV GGNNCC 2 cut(s) 83, 234
NmuCI GTSAC 2 cut(s) 400, 485
NsiI ATGCAT 2 cut(s) 315, 323
PagI TCATGA 1 cut(s) 519
PciSI GCTCTTC 1 cut(s) 359
PfeI GAWTC 1 cut(s) 208
PkrI GCNGC 5 cut(s) 96, 117, 705, 744, 778
PleI GAGTC 1 cut(s) 482
PpsI GAGTC 1 cut(s) 482
PspN4I GGNNCC 2 cut(s) 83, 234
PspPI GGNCC 1 cut(s) 81
PstI CTGCAG 1 cut(s) 120
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
RseI CAYNNNNRTG 1 cut(s) 338
SapI GCTCTTC 1 cut(s) 359
SaqAI TTAA 3 cut(s) 698, 737, 808
SatI GCNGC 5 cut(s) 95, 116, 704, 743, 777
Sau3AI GATC 4 cut(s) 279, 286, 639, 786
Sau96I GGNCC 1 cut(s) 81
ScaI AGTACT 1 cut(s) 58
SchI GAGTC 1 cut(s) 482
SfaNI GCATC 2 cut(s) 58, 398
SfcI CTRYAG 1 cut(s) 116
SmiMI CAYNNNNRTG 1 cut(s) 338
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
SpeI ACTAGT 1 cut(s) 53
SsiI CCGC 3 cut(s) 230, 369, 777
SspI AATATT 1 cut(s) 754
SspMI CTAG 4 cut(s) 54, 267, 344, 605
StyI CCWWGG 1 cut(s) 481
TaqI TCGA 1 cut(s) 285
TatI WGTACW 1 cut(s) 56
TauI GCSGC 1 cut(s) 779
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 3 cut(s) 698, 737, 808
Tru9I TTAA 3 cut(s) 698, 737, 808
TscAI CASTG 1 cut(s) 150
TseFI GTSAC 2 cut(s) 400, 485
TseI GCWGC 4 cut(s) 94, 115, 703, 742
Tsp45I GTSAC 2 cut(s) 400, 485
TspDTI ATGAA 3 cut(s) 508, 536, 616
TspRI CASTG 1 cut(s) 150
XagI CCTNNNNNAGG 1 cut(s) 248
XapI RAATTY 4 cut(s) 33, 515, 546, 631
XspI CTAG 4 cut(s) 54, 267, 344, 605
ZrmI AGTACT 1 cut(s) 58
Zsp2I ATGCAT 2 cut(s) 315, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.