Rroxscaffold_2G00084540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000247
Physical Location & Seq
Forward (+)
7090719 .. 7092565
1847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00084540.1

Sequence Viewer

Length: 1065 bp
ATGCTAGGCCTGCTCCTTCAAGTGAAGCTGGCAGCCGGAAATAAATCTCCATTTGTCACATACCATCTCACTATATATGCTGACATTCATTGCTGTCCTCTACTCCTCTTCATTTACATCTGGTCATCGGCAACTGTCAAGATACTGCGATCTCCCAATTCAGATTTGGCTGAATTGATGAGCAATATTAGCCTCTTGGTTGGATCCCTCACTTCGATCTTGCTATTGCTCATCCTCGTTCGAGTTTTTGGGTGGCTCGCCCTCTGTTTGTGGATTCTTTACTATGTTAGCGACGTGGTAACAAAGAAATCTACTTTGAGGGATGCAATTAGCAGGCCCCAGATTGAGCAGCGACCTCAATTTGGGGAGCTGCAGGGGCTTGAGGAAAGAAGTCTGGCAGTGGGAGGTTGGGGTAAGACCACCACAGCATATGTAAAGACAGACAATTTGTGTGATAAATTGAATCGGACTGAGGACGAGTTAGCGGTGCCATCTCTCCTGCGACAGGCAGGTTATGTAGCTAGGAAGGTGCTGATCATCGATCATCGCAGTTGTATAAGCCCAATGCATAAATGCATATTCTTTCTCATGTCTATGCTAGGAATACTCCTCCAATTGAAGAGCGGAGGAGGAGTTGGAACTGCATCTCTGTTTGTCACAAACTACTACTCTTTACTCACCTTTATTGTTGCCTTACTTGTTTACATCGGGACTTTATTTGCTGTCAAAATACTCCAAGGTGACTCTAATTCTTCAGAGTTGACATCTGAATTCATGAATAACATTAGTATCTTATTCGGAATTCTCGCCTCAACTTTACTATTGCTCATCCTTGTTCCAGTTCTCGGGTATGTTGCTCTAGCCTTCTGGAGCATTTACTTCATAAATTTTGTGATCAAGTCGCGCGAATACTTGGTATCATTGTATGGAAGTGGAGTTGCAGTTCAGGAATTAAAGCAGCTTGCAGGACTTGCTCATGCCTTTCAGAAATTAAAGCAGCTATTCAATATTCGCCCGAACAAGAGCGAAGCCGCAGGCCAGATCAATGGGCTAACAGAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

354

Amino Acids

39.15

Weight (kDa)

9.02

Isoelectric Point (pI)

51.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 500
AccB1I GGYRCC 1 cut(s) 487
AccBSI CCGCTC 1 cut(s) 624
AccII CGCG 2 cut(s) 904, 906
AciI CCGC 3 cut(s) 485, 624, 1032
AclWI GGATC 2 cut(s) 198, 211
AcsI RAATTY 3 cut(s) 770, 801, 886
AcuI CTGAAG 1 cut(s) 738
AfiI CCNNNNNNNGG 3 cut(s) 362, 505, 845
AgsI TTSAA 4 cut(s) 20, 463, 619, 1006
AjiI CACGTC 1 cut(s) 295
AloI GAACNNNNNNTCC 2 cut(s) 927, 959
AluBI AGCT 5 cut(s) 28, 370, 521, 961, 1000
AluI AGCT 5 cut(s) 28, 370, 521, 961, 1000
AlwI GGATC 2 cut(s) 198, 211
Ama87I CYCGRG 1 cut(s) 845
AoxI GGCC 3 cut(s) 7, 335, 1036
ApeKI GCWGC 5 cut(s) 32, 349, 370, 958, 997
ApoI RAATTY 3 cut(s) 770, 801, 886
ArsI GACNNNNNNTTYG 2 cut(s) 430, 462
AspLEI GCGC 1 cut(s) 906
AspS9I GGNCC 1 cut(s) 336
AsuHPI GGTGA 2 cut(s) 670, 752
AvaI CYCGRG 1 cut(s) 845
BaeI ACNNNNGTAYC 2 cut(s) 772, 805
BamHI GGATCC 1 cut(s) 203
BanI GGYRCC 1 cut(s) 487
BbvI GCAGC 5 cut(s) 44, 357, 361, 970, 1009
BccI CCATC 2 cut(s) 72, 499
BclI TGATCA 2 cut(s) 534, 894
BfaI CTAG 4 cut(s) 5, 522, 599, 860
BfmI CTRYAG 1 cut(s) 371
BfuAI ACCTGC 1 cut(s) 500
BisI GCNGC 6 cut(s) 33, 350, 371, 959, 998, 1032
BlsI GCNGC 6 cut(s) 34, 351, 372, 960, 999, 1033
BmeT110I CYCGRG 1 cut(s) 845
BmgBI CACGTC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 336
BmiI GGNNCC 3 cut(s) 205, 338, 489
BmsI GCATC 2 cut(s) 313, 653
BpmI CTGGAG 1 cut(s) 889
BpuEI CTTGAG 1 cut(s) 401
Bsa29I ATCGAT 1 cut(s) 540
BsaJI CCNNGG 1 cut(s) 736
BsaXI ACNNNNNCTCC 4 cut(s) 618, 648, 927, 957
Bsc4I CCNNNNNNNGG 3 cut(s) 362, 505, 845
Bse1I ACTGG 1 cut(s) 839
Bse3DI GCAATG 1 cut(s) 88
BseCI ATCGAT 1 cut(s) 540
BseDI CCNNGG 1 cut(s) 736
BseGI GGATG 3 cut(s) 231, 328, 828
BseLI CCNNNNNNNGG 3 cut(s) 362, 505, 845
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 1 cut(s) 839
BseRI GAGGAG 4 cut(s) 95, 599, 642, 645
BseXI GCAGC 5 cut(s) 44, 357, 361, 970, 1009
Bsh1236I CGCG 2 cut(s) 904, 906
BshFI GGCC 3 cut(s) 9, 337, 1038
BshNI GGYRCC 1 cut(s) 487
BshVI ATCGAT 1 cut(s) 540
BsiHKCI CYCGRG 1 cut(s) 845
BsiSI CCGG 1 cut(s) 36
BslFI GGGAC 1 cut(s) 724
BslI CCNNNNNNNGG 3 cut(s) 362, 505, 845
BsmFI GGGAC 1 cut(s) 724
BsnI GGCC 3 cut(s) 9, 337, 1038
BsoBI CYCGRG 1 cut(s) 845
Bsp143I GATC 7 cut(s) 149, 203, 216, 534, 541, 894, 1041
BspACI CCGC 3 cut(s) 485, 624, 1032
BspANI GGCC 3 cut(s) 9, 337, 1038
BspCNI CTCAG 1 cut(s) 463
BspDI ATCGAT 1 cut(s) 540
BspFNI CGCG 2 cut(s) 904, 906
BspHI TCATGA 1 cut(s) 774
BspLI GGNNCC 3 cut(s) 205, 338, 489
BspMAI CTGCAG 1 cut(s) 375
BspMI ACCTGC 1 cut(s) 500
BspPI GGATC 2 cut(s) 198, 211
BspQI GCTCTTC 1 cut(s) 614
BspT107I GGYRCC 1 cut(s) 487
BsrBI CCGCTC 1 cut(s) 624
BsrDI GCAATG 1 cut(s) 88
BsrI ACTGG 1 cut(s) 839
BssECI CCNNGG 1 cut(s) 736
BssMI GATC 7 cut(s) 149, 203, 216, 534, 541, 894, 1041
BssT1I CCWWGG 1 cut(s) 736
Bst4CI ACNGT 1 cut(s) 136
Bst6I CTCTTC 2 cut(s) 113, 614
BstAPI GCANNNNNTGC 1 cut(s) 971
BstC8I GCNNGC 6 cut(s) 11, 30, 258, 335, 963, 1036
BstDEI CTNAG 1 cut(s) 471
BstENI CCTNNNNNAGG 1 cut(s) 503
BstF5I GGATG 3 cut(s) 231, 328, 828
BstFNI CGCG 2 cut(s) 904, 906
BstHHI GCGC 1 cut(s) 906
BstKTI GATC 7 cut(s) 152, 206, 219, 537, 544, 897, 1044
BstMBI GATC 7 cut(s) 149, 203, 216, 534, 541, 894, 1041
BstMWI GCNNNNNNNGC 4 cut(s) 10, 189, 376, 971
BstSFI CTRYAG 1 cut(s) 371
BstUI CGCG 2 cut(s) 904, 906
BstV1I GCAGC 5 cut(s) 44, 357, 361, 970, 1009
BstX2I RGATCY 1 cut(s) 203
BstXI CCANNNNNNTGG 1 cut(s) 1046
BstYI RGATCY 1 cut(s) 203
Bsu15I ATCGAT 1 cut(s) 540
BsuRI GGCC 3 cut(s) 9, 337, 1038
BsuTUI ATCGAT 1 cut(s) 540
BtgZI GCGATG 1 cut(s) 530
BtrI CACGTC 1 cut(s) 295
BtsCI GGATG 3 cut(s) 231, 328, 828
BtsI GCAGTG 1 cut(s) 405
BtsIMutI CAGTG 1 cut(s) 405
BveI ACCTGC 1 cut(s) 500
Cac8I GCNNGC 6 cut(s) 11, 30, 258, 335, 963, 1036
CciI TCATGA 1 cut(s) 774
CfoI GCGC 1 cut(s) 906
Cfr13I GGNCC 1 cut(s) 336
ClaI ATCGAT 1 cut(s) 540
CviAII CATG 3 cut(s) 589, 775, 977
DdeI CTNAG 1 cut(s) 471
DpnI GATC 7 cut(s) 151, 205, 218, 536, 543, 896, 1043
DpnII GATC 7 cut(s) 149, 203, 216, 534, 541, 894, 1041
Eam1104I CTCTTC 2 cut(s) 113, 614
EarI CTCTTC 2 cut(s) 113, 614
Eco130I CCWWGG 1 cut(s) 736
Eco147I AGGCCT 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 738
Eco88I CYCGRG 1 cut(s) 845
EcoNI CCTNNNNNAGG 1 cut(s) 503
EcoO109I RGGNCCY 1 cut(s) 336
EcoRI GAATTC 2 cut(s) 770, 801
EcoT14I CCWWGG 1 cut(s) 736
EcoT22I ATGCAT 2 cut(s) 570, 578
ErhI CCWWGG 1 cut(s) 736
FaeI CATG 3 cut(s) 592, 778, 980
FaqI GGGAC 1 cut(s) 724
FatI CATG 3 cut(s) 588, 774, 976
FauNDI CATATG 1 cut(s) 430
FbaI TGATCA 2 cut(s) 534, 894
Fnu4HI GCNGC 6 cut(s) 33, 350, 371, 959, 998, 1032
FokI GGATG 3 cut(s) 218, 335, 815
Fsp4HI GCNGC 6 cut(s) 33, 350, 371, 959, 998, 1032
FspBI CTAG 4 cut(s) 5, 522, 599, 860
GlaI GCGC 1 cut(s) 905
GluI GCNGC 6 cut(s) 33, 350, 371, 959, 998, 1032
GsuI CTGGAG 1 cut(s) 889
HaeIII GGCC 3 cut(s) 9, 337, 1038
HapII CCGG 1 cut(s) 36
HhaI GCGC 1 cut(s) 906
Hin1II CATG 3 cut(s) 592, 778, 980
Hin6I GCGC 1 cut(s) 904
HinP1I GCGC 1 cut(s) 904
HincII GTYRAC 1 cut(s) 762
HindII GTYRAC 1 cut(s) 762
HinfI GANTC 3 cut(s) 274, 463, 743
HpaII CCGG 1 cut(s) 36
HphI GGTGA 2 cut(s) 670, 752
Hpy166II GTNNAC 2 cut(s) 703, 762
Hpy188I TCNGA 6 cut(s) 163, 468, 757, 769, 800, 987
Hpy188III TCNNGA 5 cut(s) 139, 709, 775, 868, 947
Hpy8I GTNNAC 2 cut(s) 703, 762
Hpy99I CGWCG 1 cut(s) 296
HpyAV CCTTC 3 cut(s) 26, 520, 874
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 7 cut(s) 326, 373, 568, 576, 644, 941, 965
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 189, 376, 971
HpyF3I CTNAG 1 cut(s) 471
HpySE526I ACGT 1 cut(s) 294
Hsp92II CATG 3 cut(s) 592, 778, 980
HspAI GCGC 1 cut(s) 904
Ksp22I TGATCA 2 cut(s) 534, 894
Kzo9I GATC 7 cut(s) 149, 203, 216, 534, 541, 894, 1041
LguI GCTCTTC 1 cut(s) 614
LmnI GCTCC 3 cut(s) 18, 367, 870
Lsp1109I GCAGC 5 cut(s) 44, 357, 361, 970, 1009
LweI GCATC 2 cut(s) 313, 653
MaeI CTAG 4 cut(s) 5, 522, 599, 860
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 4 cut(s) 55, 298, 655, 740
MalI GATC 7 cut(s) 151, 205, 218, 536, 543, 896, 1043
MbiI CCGCTC 1 cut(s) 624
MboI GATC 7 cut(s) 149, 203, 216, 534, 541, 894, 1041
MboII GAAGA 3 cut(s) 100, 631, 744
MfeI CAATTG 1 cut(s) 614
MflI RGATCY 1 cut(s) 203
MlyI GAGTC 1 cut(s) 737
MmeI TCCRAC 2 cut(s) 181, 616
Mph1103I ATGCAT 2 cut(s) 570, 578
MseI TTAA 3 cut(s) 953, 992, 1063
MslI CAYNNNNRTG 1 cut(s) 593
MspI CCGG 1 cut(s) 36
MunI CAATTG 1 cut(s) 614
MvnI CGCG 2 cut(s) 904, 906
MwoI GCNNNNNNNGC 4 cut(s) 10, 189, 376, 971
NdeI CATATG 1 cut(s) 430
NdeII GATC 7 cut(s) 149, 203, 216, 534, 541, 894, 1041
NlaIII CATG 3 cut(s) 592, 778, 980
NlaIV GGNNCC 3 cut(s) 205, 338, 489
NmuCI GTSAC 3 cut(s) 55, 655, 740
NsiI ATGCAT 2 cut(s) 570, 578
PagI TCATGA 1 cut(s) 774
PceI AGGCCT 1 cut(s) 9
PciSI GCTCTTC 1 cut(s) 614
PfeI GAWTC 2 cut(s) 274, 463
PkrI GCNGC 6 cut(s) 34, 351, 372, 960, 999, 1033
PleI GAGTC 1 cut(s) 737
PpsI GAGTC 1 cut(s) 737
PspN4I GGNNCC 3 cut(s) 205, 338, 489
PspPI GGNCC 1 cut(s) 336
PstI CTGCAG 1 cut(s) 375
PsuI RGATCY 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 593
SapI GCTCTTC 1 cut(s) 614
SaqAI TTAA 3 cut(s) 953, 992, 1063
SatI GCNGC 6 cut(s) 33, 350, 371, 959, 998, 1032
Sau3AI GATC 7 cut(s) 149, 203, 216, 534, 541, 894, 1041
Sau96I GGNCC 1 cut(s) 336
SchI GAGTC 1 cut(s) 737
SfaNI GCATC 2 cut(s) 313, 653
SfcI CTRYAG 1 cut(s) 371
SmiMI CAYNNNNRTG 1 cut(s) 593
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
SseBI AGGCCT 1 cut(s) 9
SsiI CCGC 3 cut(s) 485, 624, 1032
SspI AATATT 2 cut(s) 187, 1009
SspMI CTAG 4 cut(s) 5, 522, 599, 860
StuI AGGCCT 1 cut(s) 9
StyI CCWWGG 1 cut(s) 736
TaaI ACNGT 1 cut(s) 136
TaiI ACGT 1 cut(s) 297
TaqI TCGA 3 cut(s) 215, 241, 540
TauI GCSGC 1 cut(s) 1034
TfiI GAWTC 2 cut(s) 274, 463
Tru1I TTAA 3 cut(s) 953, 992, 1063
Tru9I TTAA 3 cut(s) 953, 992, 1063
TscAI CASTG 1 cut(s) 405
TseFI GTSAC 3 cut(s) 55, 655, 740
TseI GCWGC 5 cut(s) 32, 349, 370, 958, 997
Tsp45I GTSAC 3 cut(s) 55, 655, 740
TspDTI ATGAA 5 cut(s) 77, 100, 763, 791, 871
TspRI CASTG 1 cut(s) 405
XagI CCTNNNNNAGG 1 cut(s) 503
XapI RAATTY 3 cut(s) 770, 801, 886
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XspI CTAG 4 cut(s) 5, 522, 599, 860
Zsp2I ATGCAT 2 cut(s) 570, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.