Prupe.3G261100_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
24724073 .. 24726554
2482 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G261100.3

Sequence Viewer

Length: 459 bp
ATGAACTTCCGATCTGAATTCCGTTTATTTTTTTCTCCTGCAGTTATAAATTTGGTTTCGCTCGGGATGAACCATCAAATAAACATTCCTGTTGGCAACCCTCTACGTTCAGAGGCCAGCACAAGCAGAGAACGTTCTACAAGGGAATTGCATGAACATATATTTTCTTTCATCGCCATGTTAGCAGGGCTCCTCCAACTGAAACAGGGAGTATTTGACACAGACTACCTCACTCTTGTGAGCCTTGTTGTTGCTTTAATCATTTTCTGCGGTTCATTAATTGGCTCTACATATATAAGACAAGCTCACCCCAATTCAGATTTGGCAAAATTGATGGACAAAATTAGCCTTCCTTTTGGAGCTCTTGCCTTGGTTTTTGAATTGGTGATCCTTTGTACGGGTTTTAGGGTTAGCCTTCCTCTGCATCTGGATCGTTTGGTTTGCGAGCTTTGTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

16.92

Weight (kDa)

6.95

Isoelectric Point (pI)

39.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 47
AciI CCGC 1 cut(s) 270
AclI AACGTT 1 cut(s) 133
AclWI GGATC 2 cut(s) 382, 438
AcsI RAATTY 2 cut(s) 17, 49
AfaI GTAC 1 cut(s) 397
AfiI CCNNNNNNNGG 1 cut(s) 397
AgsI TTSAA 1 cut(s) 380
AleI CACNNNNGTG 1 cut(s) 236
AluBI AGCT 4 cut(s) 305, 362, 448, 456
AluI AGCT 4 cut(s) 305, 362, 448, 456
Alw21I GWGCWC 1 cut(s) 364
AlwI GGATC 2 cut(s) 382, 438
Ama87I CYCGRG 1 cut(s) 62
AoxI GGCC 1 cut(s) 114
ApoI RAATTY 2 cut(s) 17, 49
AseI ATTAAT 1 cut(s) 278
AsuHPI GGTGA 2 cut(s) 299, 397
AvaI CYCGRG 1 cut(s) 62
BanII GRGCYC 2 cut(s) 192, 364
Bbv12I GWGCWC 1 cut(s) 364
BccI CCATC 2 cut(s) 81, 328
BcgI CGANNNNNNTGC 2 cut(s) 413, 447
BfmI CTRYAG 1 cut(s) 39
BmeT110I CYCGRG 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 191
BmsI GCATC 1 cut(s) 433
BsaJI CCNNGG 1 cut(s) 369
Bsc4I CCNNNNNNNGG 1 cut(s) 397
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 1 cut(s) 72
BseLI CCNNNNNNNGG 1 cut(s) 397
BseRI GAGGAG 1 cut(s) 182
BshFI GGCC 1 cut(s) 116
BsiHKAI GWGCWC 1 cut(s) 364
BsiHKCI CYCGRG 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 397
BsnI GGCC 1 cut(s) 116
BsoBI CYCGRG 1 cut(s) 62
Bsp1286I GDGCHC 2 cut(s) 192, 364
Bsp143I GATC 3 cut(s) 11, 387, 430
BspACI CCGC 1 cut(s) 270
BspANI GGCC 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 191
BspMAI CTGCAG 1 cut(s) 43
BspPI GGATC 2 cut(s) 382, 438
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 3 cut(s) 11, 387, 430
BssT1I CCWWGG 1 cut(s) 369
BstC8I GCNNGC 2 cut(s) 118, 446
BstF5I GGATG 1 cut(s) 72
BstKTI GATC 3 cut(s) 14, 390, 433
BstMBI GATC 3 cut(s) 11, 387, 430
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstSFI CTRYAG 1 cut(s) 39
BsuRI GGCC 1 cut(s) 116
BtgZI GCGATG 1 cut(s) 157
BtsCI GGATG 1 cut(s) 72
Cac8I GCNNGC 2 cut(s) 118, 446
Csp6I GTAC 1 cut(s) 396
CviAII CATG 2 cut(s) 152, 178
CviQI GTAC 1 cut(s) 396
DpnI GATC 3 cut(s) 13, 389, 432
DpnII GATC 3 cut(s) 11, 387, 430
Ecl136II GAGCTC 1 cut(s) 362
Eco130I CCWWGG 1 cut(s) 369
Eco24I GRGCYC 2 cut(s) 192, 364
Eco53kI GAGCTC 1 cut(s) 362
Eco88I CYCGRG 1 cut(s) 62
EcoICRI GAGCTC 1 cut(s) 362
EcoRI GAATTC 1 cut(s) 17
EcoT14I CCWWGG 1 cut(s) 369
EcoT38I GRGCYC 2 cut(s) 192, 364
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 2 cut(s) 155, 181
FaiI YATR 8 cut(s) 47, 153, 159, 161, 179, 292, 294, 296
FatI CATG 2 cut(s) 151, 177
FokI GGATG 1 cut(s) 79
FriOI GRGCYC 2 cut(s) 192, 364
HaeIII GGCC 1 cut(s) 116
Hin1II CATG 2 cut(s) 155, 181
HphI GGTGA 2 cut(s) 299, 397
Hpy188I TCNGA 4 cut(s) 11, 16, 112, 319
Hpy188III TCNNGA 2 cut(s) 64, 428
HpyAV CCTTC 2 cut(s) 359, 425
HpyCH4IV ACGT 2 cut(s) 106, 133
HpyCH4V TGCA 3 cut(s) 41, 151, 424
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpySE526I ACGT 2 cut(s) 106, 133
Hsp92II CATG 2 cut(s) 155, 181
Kzo9I GATC 3 cut(s) 11, 387, 430
LmnI GCTCC 2 cut(s) 195, 359
LpnPI CCDG 6 cut(s) 51, 102, 130, 171, 191, 413
LweI GCATC 1 cut(s) 433
MaeII ACGT 2 cut(s) 106, 133
MalI GATC 3 cut(s) 13, 389, 432
MboI GATC 3 cut(s) 11, 387, 430
MhlI GDGCHC 2 cut(s) 192, 364
MluCI AATT 8 cut(s) 17, 49, 146, 279, 313, 329, 342, 380
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 5 cut(s) 106, 111, 203, 239, 429
MseI TTAA 2 cut(s) 257, 278
MslI CAYNNNNRTG 2 cut(s) 176, 236
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 3 cut(s) 11, 387, 430
NlaIII CATG 2 cut(s) 155, 181
NlaIV GGNNCC 1 cut(s) 191
OliI CACNNNNGTG 1 cut(s) 236
PshBI ATTAAT 1 cut(s) 278
PsiI TTATAA 1 cut(s) 47
Psp124BI GAGCTC 1 cut(s) 364
Psp1406I AACGTT 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 191
PstI CTGCAG 1 cut(s) 43
RsaI GTAC 1 cut(s) 397
RsaNI GTAC 1 cut(s) 396
RseI CAYNNNNRTG 2 cut(s) 176, 236
SacI GAGCTC 1 cut(s) 364
SaqAI TTAA 2 cut(s) 257, 278
Sau3AI GATC 3 cut(s) 11, 387, 430
SduI GDGCHC 2 cut(s) 192, 364
SetI ASST 7 cut(s) 109, 136, 231, 307, 364, 450, 458
SfaNI GCATC 1 cut(s) 433
SfcI CTRYAG 1 cut(s) 39
SmiMI CAYNNNNRTG 2 cut(s) 176, 236
Sse9I AATT 8 cut(s) 17, 49, 146, 279, 313, 329, 342, 380
SsiI CCGC 1 cut(s) 270
SstI GAGCTC 1 cut(s) 364
StyI CCWWGG 1 cut(s) 369
TaiI ACGT 2 cut(s) 109, 136
TasI AATT 8 cut(s) 17, 49, 146, 279, 313, 329, 342, 380
Tru1I TTAA 2 cut(s) 257, 278
Tru9I TTAA 2 cut(s) 257, 278
TspDTI ATGAA 5 cut(s) 17, 83, 160, 168, 264
TspGWI ACGGA 1 cut(s) 11
VspI ATTAAT 1 cut(s) 278
XapI RAATTY 2 cut(s) 17, 49
XcmI CCANNNNNNNNNTGG 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.