Rroxscaffold_2G00129390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000247
Physical Location & Seq
Reverse (-)
65251469 .. 65251999
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00129390.1

Sequence Viewer

Length: 531 bp
ATGGCAGCCCAAGGCAAGCGGGTCACAATTTTCATGGGAAATATTGCACCAATGCGGCAATGCCTTTTTTTACCAGTCATGGGCATTTTAGCCTGGCTACTCCAACTGAAGTACACATCTGCGAATGCATCTCCATTCGTCACCGACTATGTTACCATGCTGATGTTTAGCATCGCTTTCTTGGTTTACTTCGGGTTCTTGACCCTGGAGATATTACTAGCCCATGCTCCGAATTCAGATATAGGGGAGTTCATCAACAACATTACGTTTCTGTTCGGAACTCTTGCCTCGATCTTGCTACTGCTTATCCTGGTTCTATCTTTCGGGTTGCTTGCCCTCCTCTTGTGGACGATTTATCTTGTGAGGGATGTTGCAACTAAGAAGTCGTACAGGAATGCAGTTTATGATGTCTTCAACAAAGTAAGAGAAATGATTAATGGTCACTTGGTGGAGATTAATGCTGGACAACCCCTACCACTGCCGCATAGCGTTGTACAAATCGAAGATGCAGGAGAACCGAATGTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

19.59

Weight (kDa)

6.26

Isoelectric Point (pI)

40.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 19, 55, 482
AcsI RAATTY 1 cut(s) 232
AcuI CTGAAG 1 cut(s) 128
AdeI CACNNNGTG 1 cut(s) 448
AfaI GTAC 3 cut(s) 113, 389, 495
AfiI CCNNNNNNNGG 1 cut(s) 80
AgsI TTSAA 1 cut(s) 415
AjnI CCWGG 3 cut(s) 92, 204, 309
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 232
AseI ATTAAT 2 cut(s) 435, 456
AsuHPI GGTGA 1 cut(s) 133
BbsI GAAGAC 1 cut(s) 403
BbvI GCAGC 1 cut(s) 17
BciT130I CCWGG 3 cut(s) 94, 206, 311
BfaI CTAG 1 cut(s) 218
BisI GCNGC 3 cut(s) 6, 56, 482
BlsI GCNGC 3 cut(s) 7, 57, 483
Bme1390I CCNGG 3 cut(s) 94, 206, 311
BmrFI CCNGG 3 cut(s) 94, 206, 311
BmsI GCATC 3 cut(s) 137, 180, 496
BpiI GAAGAC 1 cut(s) 403
BpmI CTGGAG 1 cut(s) 227
BsaJI CCNNGG 2 cut(s) 10, 204
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 74
Bse3DI GCAATG 1 cut(s) 65
BseBI CCWGG 3 cut(s) 94, 206, 311
BseDI CCNNGG 2 cut(s) 10, 204
BseGI GGATG 1 cut(s) 373
BseLI CCNNNNNNNGG 1 cut(s) 80
BseMI GCAATG 1 cut(s) 65
BseNI ACTGG 1 cut(s) 74
BseRI GAGGAG 1 cut(s) 329
BseXI GCAGC 1 cut(s) 17
BslI CCNNNNNNNGG 1 cut(s) 80
BsmI GAATGC 2 cut(s) 130, 400
Bsp1407I TGTACA 1 cut(s) 493
Bsp143I GATC 1 cut(s) 291
BspACI CCGC 3 cut(s) 19, 55, 482
BsrDI GCAATG 1 cut(s) 65
BsrGI TGTACA 1 cut(s) 493
BsrI ACTGG 1 cut(s) 74
BssECI CCNNGG 2 cut(s) 10, 204
BssMI GATC 1 cut(s) 291
BssT1I CCWWGG 1 cut(s) 10
Bst2UI CCWGG 3 cut(s) 94, 206, 311
BstAUI TGTACA 1 cut(s) 493
BstC8I GCNNGC 2 cut(s) 17, 333
BstDEI CTNAG 1 cut(s) 378
BstF5I GGATG 1 cut(s) 373
BstKTI GATC 1 cut(s) 294
BstMBI GATC 1 cut(s) 291
BstNI CCWGG 3 cut(s) 94, 206, 311
BstSCI CCNGG 3 cut(s) 92, 204, 309
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 403
BtgZI GCGATG 1 cut(s) 157
BtsCI GGATG 1 cut(s) 373
BtsI GCAGTG 1 cut(s) 476
BtsIMutI CAGTG 1 cut(s) 476
Cac8I GCNNGC 2 cut(s) 17, 333
Csp6I GTAC 3 cut(s) 112, 388, 494
CviAII CATG 4 cut(s) 34, 79, 157, 224
CviJI RGCY 4 cut(s) 8, 92, 97, 221
CviKI_1 RGCY 4 cut(s) 8, 92, 97, 221
CviQI GTAC 3 cut(s) 112, 388, 494
DdeI CTNAG 1 cut(s) 378
DpnI GATC 1 cut(s) 293
DpnII GATC 1 cut(s) 291
DraIII CACNNNGTG 1 cut(s) 448
Eco130I CCWWGG 1 cut(s) 10
Eco57I CTGAAG 1 cut(s) 128
EcoRI GAATTC 1 cut(s) 232
EcoRII CCWGG 3 cut(s) 92, 204, 309
EcoT14I CCWWGG 1 cut(s) 10
EcoT22I ATGCAT 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 4 cut(s) 37, 82, 160, 227
FaiI YATR 8 cut(s) 35, 80, 150, 158, 225, 242, 405, 486
FatI CATG 4 cut(s) 33, 78, 156, 223
FauI CCCGC 1 cut(s) 12
Fnu4HI GCNGC 3 cut(s) 6, 56, 482
FokI GGATG 1 cut(s) 380
Fsp4HI GCNGC 3 cut(s) 6, 56, 482
FspBI CTAG 1 cut(s) 218
GluI GCNGC 3 cut(s) 6, 56, 482
GsuI CTGGAG 1 cut(s) 227
Hin1II CATG 4 cut(s) 37, 82, 160, 227
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 3 cut(s) 114, 187, 348
Hpy188I TCNGA 3 cut(s) 231, 238, 278
Hpy188III TCNNGA 1 cut(s) 199
Hpy8I GTNNAC 3 cut(s) 114, 187, 348
HpyCH4IV ACGT 1 cut(s) 266
HpyCH4V TGCA 5 cut(s) 47, 128, 374, 398, 509
HpyF3I CTNAG 1 cut(s) 378
HpySE526I ACGT 1 cut(s) 266
Hsp92II CATG 4 cut(s) 37, 82, 160, 227
Kzo9I GATC 1 cut(s) 291
LmnI GCTCC 1 cut(s) 232
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 3 cut(s) 137, 180, 496
MaeI CTAG 1 cut(s) 218
MaeII ACGT 1 cut(s) 266
MaeIII GTNAC 4 cut(s) 22, 139, 151, 440
MalI GATC 1 cut(s) 293
MboI GATC 1 cut(s) 291
MboII GAAGA 2 cut(s) 403, 515
MluCI AATT 2 cut(s) 27, 232
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 4 cut(s) 298, 347, 350, 357
Mph1103I ATGCAT 1 cut(s) 130
MseI TTAA 2 cut(s) 435, 456
MslI CAYNNNNRTG 1 cut(s) 161
MspR9I CCNGG 3 cut(s) 94, 206, 311
Mva1269I GAATGC 2 cut(s) 130, 400
MvaI CCWGG 3 cut(s) 94, 206, 311
NdeII GATC 1 cut(s) 291
NlaIII CATG 4 cut(s) 37, 82, 160, 227
NmuCI GTSAC 3 cut(s) 22, 139, 440
NsiI ATGCAT 1 cut(s) 130
PctI GAATGC 2 cut(s) 130, 400
PkrI GCNGC 3 cut(s) 7, 57, 483
PshBI ATTAAT 2 cut(s) 435, 456
Psp6I CCWGG 3 cut(s) 92, 204, 309
PspGI CCWGG 3 cut(s) 92, 204, 309
RsaI GTAC 3 cut(s) 113, 389, 495
RsaNI GTAC 3 cut(s) 112, 388, 494
RseI CAYNNNNRTG 1 cut(s) 161
SaqAI TTAA 2 cut(s) 435, 456
SatI GCNGC 3 cut(s) 6, 56, 482
Sau3AI GATC 1 cut(s) 291
ScrFI CCNGG 3 cut(s) 94, 206, 311
SetI ASST 1 cut(s) 269
SfaNI GCATC 3 cut(s) 137, 180, 496
SmiMI CAYNNNNRTG 1 cut(s) 161
Sse9I AATT 2 cut(s) 27, 232
SsiI CCGC 3 cut(s) 19, 55, 482
SspI AATATT 1 cut(s) 43
SspMI CTAG 1 cut(s) 218
StyD4I CCNGG 3 cut(s) 92, 204, 309
StyI CCWWGG 1 cut(s) 10
TaiI ACGT 1 cut(s) 269
TaqI TCGA 2 cut(s) 290, 501
TasI AATT 2 cut(s) 27, 232
TatI WGTACW 2 cut(s) 111, 493
TauI GCSGC 2 cut(s) 58, 484
Tru1I TTAA 2 cut(s) 435, 456
Tru9I TTAA 2 cut(s) 435, 456
TscAI CASTG 1 cut(s) 483
TseFI GTSAC 3 cut(s) 22, 139, 440
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 3 cut(s) 22, 139, 440
TspDTI ATGAA 2 cut(s) 22, 241
TspRI CASTG 1 cut(s) 483
VspI ATTAAT 2 cut(s) 435, 456
XapI RAATTY 1 cut(s) 232
XspI CTAG 1 cut(s) 218
Zsp2I ATGCAT 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.