Rmu_sc0000690.1_g000022

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000690.1
OG0000247
Physical Location & Seq
Reverse (-)
69370 .. 76529
7160 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000690.1_g000022.1.cds

Sequence Viewer

Length: 1071 bp
atgggtgttctaggctggctcctccaactgaaatacgtaacagcgagtgcttccccgtttgtgacacactatgttactatgctgatgtttattgtcgttttcattgtttactttggggcattgactgctaaaatattctcccaagctcctaactcggatatggctgagttcatgaccaacattactctcttgtccggaactcttgcctcgattctactattgcacatcctcgttcgagcttttgggtgtttcgctctcctcttgtgggcgatttatcttgttagggacgttgtaactaagaaatcatatagaaaggcactcgttcatgtcttcgacaaagtgaaagtgctgatttatggcccctcagaggagagtaatgctgtgcaacccccaccaattgcagaggtcgcggtaccaatacaagatgccggacaacacaatgtagaagaaagaaaaatggagcagcgtaatcggaaacagcctcttactacaccgctgcccaaatccttcagccagccggttaggattgccaccgtgcccgccgacacctcctctgaagccagagccactgtccatatttcatcttccctgattgtccatagatcggacccctctaagcagcaccgatcgtcctcaatcgcacccggaaatgaggagaaagaacctagacttccttgctccatcaaccaatctagggctgggatcggttctgttttgacagttcaagcagtggaaccaagaccgaaaccgagttgtaattttaggttcgggtttggtgtttttcaatttaagaaccgagatggaactgaacctatcataaacgttctgagagatgaagaacacaaggaaccgagaccgaaccgatatcttctttctaagttcaactttgaaatggcaccaagattctctattcaggaaccgcaccgatttgcgtcgaacctgccttgggtcttccttttctggccaagtcgccgtgatctaccaccgtggggaggttgggtatgggcaaaggagtctaatggtgcccgcctcacgttcctaggaggccggaggaggaagttgcagaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

356

Amino Acids

40.25

Weight (kDa)

10.03

Isoelectric Point (pI)

53.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 948
Acc65I GGTACC 1 cut(s) 412
AccB1I GGYRCC 3 cut(s) 412, 895, 1022
AccII CGCG 1 cut(s) 410
AccIII TCCGGA 1 cut(s) 194
AciI CCGC 5 cut(s) 410, 494, 540, 920, 1027
AclI AACGTT 1 cut(s) 822
AclWI GGATC 1 cut(s) 710
AcoI YGGCCR 1 cut(s) 962
AcuI CTGAAG 2 cut(s) 493, 576
AfaI GTAC 1 cut(s) 414
AfiI CCNNNNNNNGG 7 cut(s) 265, 367, 604, 694, 946, 989, 992
AgsI TTSAA 4 cut(s) 725, 785, 883, 890
AluBI AGCT 2 cut(s) 146, 239
AluI AGCT 2 cut(s) 146, 239
Alw26I GTCTC 1 cut(s) 847
AlwI GGATC 1 cut(s) 710
Aor13HI TCCGGA 1 cut(s) 194
AoxI GGCC 3 cut(s) 358, 962, 1045
ApeKI GCWGC 3 cut(s) 463, 496, 619
Asp718I GGTACC 1 cut(s) 412
AspA2I CCTAGG 1 cut(s) 1039
AspS9I GGNCC 2 cut(s) 359, 607
AsuC2I CCSGG 1 cut(s) 645
AvaII GGWCC 1 cut(s) 607
AvrII CCTAGG 1 cut(s) 1039
BaeGI GKGCMC 2 cut(s) 540, 1027
BalI TGGCCA 1 cut(s) 964
BanI GGYRCC 3 cut(s) 412, 895, 1022
BbsI GAAGAC 2 cut(s) 322, 943
BbvI GCAGC 3 cut(s) 475, 483, 631
BccI CCATC 2 cut(s) 689, 794
BceAI ACGGC 1 cut(s) 957
BcgI CGANNNNNNTGC 2 cut(s) 452, 486
BcnI CCSGG 1 cut(s) 645
BcoDI GTCTC 1 cut(s) 847
BfaI CTAG 4 cut(s) 11, 666, 693, 1040
BfuAI ACCTGC 1 cut(s) 948
BisI GCNGC 3 cut(s) 464, 497, 620
BlnI CCTAGG 1 cut(s) 1039
BlsI GCNGC 3 cut(s) 465, 498, 621
Bme1390I CCNGG 1 cut(s) 645
Bme18I GGWCC 1 cut(s) 607
BmgT120I GGNCC 2 cut(s) 359, 607
BmiI GGNNCC 9 cut(s) 20, 361, 414, 609, 735, 849, 897, 918, 1024
BmrFI CCNGG 1 cut(s) 645
BmsI GCATC 1 cut(s) 415
BpiI GAAGAC 2 cut(s) 322, 943
BpuMI CCSGG 1 cut(s) 645
BsaAI YACGTR 1 cut(s) 37
BsaI GGTCTC 1 cut(s) 847
BsaJI CCNNGG 3 cut(s) 944, 986, 1039
BsaWI WCCGGW 1 cut(s) 194
BsaXI ACNNNNNCTCC 2 cut(s) 984, 1014
Bsc4I CCNNNNNNNGG 7 cut(s) 265, 367, 604, 694, 946, 989, 992
Bse118I RCCGGY 1 cut(s) 517
BseAI TCCGGA 1 cut(s) 194
BseDI CCNNGG 3 cut(s) 944, 986, 1039
BseGI GGATG 1 cut(s) 225
BseLI CCNNNNNNNGG 7 cut(s) 265, 367, 604, 694, 946, 989, 992
BseMII CTCAG 3 cut(s) 156, 378, 818
BseRI GAGGAG 6 cut(s) 11, 248, 383, 541, 668, 1066
BseSI GKGCMC 2 cut(s) 540, 1027
BseXI GCAGC 3 cut(s) 475, 483, 631
BseYI CCCAGC 1 cut(s) 698
Bsh1236I CGCG 1 cut(s) 410
Bsh1285I CGRYCG 1 cut(s) 629
BshFI GGCC 3 cut(s) 360, 964, 1047
BshNI GGYRCC 3 cut(s) 412, 895, 1022
BsiEI CGRYCG 1 cut(s) 629
BsiSI CCGG 5 cut(s) 195, 429, 518, 645, 1048
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 7 cut(s) 265, 367, 604, 694, 946, 989, 992
BsmAI GTCTC 1 cut(s) 847
BsmFI GGGAC 1 cut(s) 299
BsnI GGCC 3 cut(s) 360, 964, 1047
Bso31I GGTCTC 1 cut(s) 847
Bsp1286I GDGCHC 2 cut(s) 540, 1027
Bsp13I TCCGGA 1 cut(s) 194
Bsp143I GATC 4 cut(s) 602, 626, 702, 976
BspACI CCGC 5 cut(s) 410, 494, 540, 920, 1027
BspANI GGCC 3 cut(s) 360, 964, 1047
BspCNI CTCAG 3 cut(s) 157, 377, 819
BspEI TCCGGA 1 cut(s) 194
BspFNI CGCG 1 cut(s) 410
BspHI TCATGA 1 cut(s) 171
BspLI GGNNCC 9 cut(s) 20, 361, 414, 609, 735, 849, 897, 918, 1024
BspMI ACCTGC 1 cut(s) 948
BspPI GGATC 1 cut(s) 710
BspT107I GGYRCC 3 cut(s) 412, 895, 1022
BspTNI GGTCTC 1 cut(s) 847
BsrFI RCCGGY 1 cut(s) 517
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 3 cut(s) 944, 986, 1039
BssMI GATC 4 cut(s) 602, 626, 702, 976
BssT1I CCWWGG 2 cut(s) 944, 1039
Bst4CI ACNGT 4 cut(s) 535, 571, 721, 987
BstAPI GCANNNNNTGC 1 cut(s) 125
BstBAI YACGTR 1 cut(s) 37
BstC8I GCNNGC 4 cut(s) 17, 515, 540, 1027
BstDEI CTNAG 6 cut(s) 165, 297, 364, 615, 827, 876
BstDSI CCRYGG 1 cut(s) 986
BstF5I GGATG 1 cut(s) 225
BstFNI CGCG 1 cut(s) 410
BstKTI GATC 4 cut(s) 605, 629, 705, 979
BstMAI GTCTC 1 cut(s) 847
BstMBI GATC 4 cut(s) 602, 626, 702, 976
BstMCI CGRYCG 1 cut(s) 629
BstMWI GCNNNNNNNGC 2 cut(s) 125, 407
BstSCI CCNGG 1 cut(s) 643
BstSLI GKGCMC 2 cut(s) 540, 1027
BstSNI TACGTA 1 cut(s) 37
BstUI CGCG 1 cut(s) 410
BstV1I GCAGC 3 cut(s) 475, 483, 631
BstV2I GAAGAC 2 cut(s) 322, 943
BsuRI GGCC 3 cut(s) 360, 964, 1047
BtgI CCRYGG 1 cut(s) 986
BtsCI GGATG 1 cut(s) 225
BtsI GCAGTG 1 cut(s) 735
BtsIMutI CAGTG 2 cut(s) 567, 735
BveI ACCTGC 1 cut(s) 948
Cac8I GCNNGC 4 cut(s) 17, 515, 540, 1027
CciI TCATGA 1 cut(s) 171
Cfr10I RCCGGY 1 cut(s) 517
Cfr13I GGNCC 2 cut(s) 359, 607
CseI GACGC 1 cut(s) 921
Csp6I GTAC 1 cut(s) 413
CviAII CATG 2 cut(s) 172, 326
CviQI GTAC 1 cut(s) 413
DdeI CTNAG 6 cut(s) 165, 297, 364, 615, 827, 876
DpnI GATC 4 cut(s) 604, 628, 704, 978
DpnII GATC 4 cut(s) 602, 626, 702, 976
EaeI YGGCCR 1 cut(s) 962
Eco105I TACGTA 1 cut(s) 37
Eco130I CCWWGG 2 cut(s) 944, 1039
Eco31I GGTCTC 1 cut(s) 847
Eco32I GATATC 1 cut(s) 866
Eco47I GGWCC 1 cut(s) 607
Eco57I CTGAAG 2 cut(s) 493, 576
EcoRV GATATC 1 cut(s) 866
EcoT14I CCWWGG 2 cut(s) 944, 1039
ErhI CCWWGG 2 cut(s) 944, 1039
FaeI CATG 2 cut(s) 175, 329
FalI AAGNNNNNCTT 2 cut(s) 869, 901
FaqI GGGAC 1 cut(s) 299
FatI CATG 2 cut(s) 171, 325
FauI CCCGC 2 cut(s) 547, 1034
Fnu4HI GCNGC 3 cut(s) 464, 497, 620
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 3 cut(s) 464, 497, 620
FspBI CTAG 4 cut(s) 11, 666, 693, 1040
GluI GCNGC 3 cut(s) 464, 497, 620
GsaI CCCAGC 1 cut(s) 702
HaeIII GGCC 3 cut(s) 360, 964, 1047
HapII CCGG 5 cut(s) 195, 429, 518, 645, 1048
HgaI GACGC 1 cut(s) 921
Hin1II CATG 2 cut(s) 175, 329
HinfI GANTC 3 cut(s) 211, 903, 1013
HpaII CCGG 5 cut(s) 195, 429, 518, 645, 1048
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 6 cut(s) 157, 367, 474, 556, 607, 828
Hpy188III TCNNGA 3 cut(s) 172, 195, 914
Hpy8I GTNNAC 1 cut(s) 109
Hpy99I CGWCG 1 cut(s) 937
HpyAV CCTTC 1 cut(s) 517
HpyCH4III ACNGT 4 cut(s) 535, 571, 721, 987
HpyCH4IV ACGT 4 cut(s) 36, 288, 822, 1034
HpyCH4V TGCA 4 cut(s) 223, 385, 401, 1063
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 407
HpyF3I CTNAG 6 cut(s) 165, 297, 364, 615, 827, 876
HpySE526I ACGT 4 cut(s) 36, 288, 822, 1034
Hsp92II CATG 2 cut(s) 175, 329
Kpn2I TCCGGA 1 cut(s) 194
KpnI GGTACC 1 cut(s) 416
Kzo9I GATC 4 cut(s) 602, 626, 702, 976
LmnI GCTCC 4 cut(s) 24, 151, 460, 683
Lsp1109I GCAGC 3 cut(s) 475, 483, 631
LweI GCATC 1 cut(s) 415
MaeI CTAG 4 cut(s) 11, 666, 693, 1040
MaeII ACGT 4 cut(s) 36, 288, 822, 1034
MaeIII GTNAC 4 cut(s) 37, 61, 73, 292
MalI GATC 4 cut(s) 604, 628, 704, 978
MboI GATC 4 cut(s) 602, 626, 702, 976
MboII GAAGA 6 cut(s) 322, 458, 576, 848, 860, 943
MfeI CAATTG 1 cut(s) 396
MhlI GDGCHC 2 cut(s) 540, 1027
MlsI TGGCCA 1 cut(s) 964
MluCI AATT 3 cut(s) 396, 757, 785
MluNI TGGCCA 1 cut(s) 964
MlyI GAGTC 1 cut(s) 1022
MmeI TCCRAC 1 cut(s) 49
Mox20I TGGCCA 1 cut(s) 964
MroI TCCGGA 1 cut(s) 194
MscI TGGCCA 1 cut(s) 964
MseI TTAA 1 cut(s) 789
Msp20I TGGCCA 1 cut(s) 964
MspA1I CMGCKG 1 cut(s) 496
MspI CCGG 5 cut(s) 195, 429, 518, 645, 1048
MspR9I CCNGG 1 cut(s) 645
MunI CAATTG 1 cut(s) 396
MvnI CGCG 1 cut(s) 410
MwoI GCNNNNNNNGC 2 cut(s) 125, 407
NciI CCSGG 1 cut(s) 645
NdeII GATC 4 cut(s) 602, 626, 702, 976
NlaIII CATG 2 cut(s) 175, 329
NlaIV GGNNCC 9 cut(s) 20, 361, 414, 609, 735, 849, 897, 918, 1024
NmuCI GTSAC 1 cut(s) 61
PagI TCATGA 1 cut(s) 171
PfeI GAWTC 2 cut(s) 211, 903
PkrI GCNGC 3 cut(s) 465, 498, 621
Ple19I CGATCG 1 cut(s) 629
PleI GAGTC 1 cut(s) 1021
PpsI GAGTC 1 cut(s) 1021
Ppu21I YACGTR 1 cut(s) 37
Psp1406I AACGTT 1 cut(s) 822
PspFI CCCAGC 1 cut(s) 698
PspN4I GGNNCC 9 cut(s) 20, 361, 414, 609, 735, 849, 897, 918, 1024
PspPI GGNCC 2 cut(s) 359, 607
PvuI CGATCG 1 cut(s) 629
RsaI GTAC 1 cut(s) 414
RsaNI GTAC 1 cut(s) 413
SaqAI TTAA 1 cut(s) 789
SatI GCNGC 3 cut(s) 464, 497, 620
Sau3AI GATC 4 cut(s) 602, 626, 702, 976
Sau96I GGNCC 2 cut(s) 359, 607
SchI GAGTC 1 cut(s) 1022
ScrFI CCNGG 1 cut(s) 645
SduI GDGCHC 2 cut(s) 540, 1027
SfaNI GCATC 1 cut(s) 415
SinI GGWCC 1 cut(s) 607
SnaBI TACGTA 1 cut(s) 37
Sse9I AATT 3 cut(s) 396, 757, 785
SsiI CCGC 5 cut(s) 410, 494, 540, 920, 1027
SspI AATATT 1 cut(s) 135
SspMI CTAG 4 cut(s) 11, 666, 693, 1040
StyD4I CCNGG 1 cut(s) 643
StyI CCWWGG 2 cut(s) 944, 1039
TaaI ACNGT 4 cut(s) 535, 571, 721, 987
TaiI ACGT 4 cut(s) 39, 291, 825, 1037
TaqI TCGA 4 cut(s) 209, 235, 333, 935
TaqII GACCGA 2 cut(s) 757, 871
TasI AATT 3 cut(s) 396, 757, 785
TfiI GAWTC 2 cut(s) 211, 903
Tru1I TTAA 1 cut(s) 789
Tru9I TTAA 1 cut(s) 789
TscAI CASTG 2 cut(s) 574, 735
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 3 cut(s) 463, 496, 619
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 5 cut(s) 91, 160, 314, 570, 849
TspRI CASTG 2 cut(s) 574, 735
VpaK11BI GGWCC 1 cut(s) 607
XcmI CCANNNNNNNNNTGG 1 cut(s) 695
XmaJI CCTAGG 1 cut(s) 1039
XspI CTAG 4 cut(s) 11, 666, 693, 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.