Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Reverse (-)

15706509 .. 15708166

Gene Structure 1658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG075200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCCGGAGATCACTTCTATTACCTCTCAGCGTCTGGACATCACAACGGGAGAGGGCGCTCCTCAGGGATATGGATATACTATAGTGACCTTGCATACATTCATACTTGCTCTCATCGGTGTCTTAGGCTTGTGCCTCCAACTCAAGTTTTCTAATGTGTCTCCATATGCCACCGCCTACGGCACTCTGATGATAAACCTCTTCATTATTGAGACATGCTTTTACATCGTCTCTTTAGTTGTGATGGGACTCCAAGCTGCTCGCAATAATGTAGATTTGGAAGACCTGATGAACATGAACAAAATTAACCTCTTACTTGGAAGTCTGTCCCTGATTTTAGAGTTGCTGGTCCTTATATCCCCTTTCGGATGCATCGCACTCTTCTTCTGGTGCACCTGCCTTTTATGCTTCGTGAGTAAATCTTATAAGTCGCTGAAAAAACTCTTCCAAAGTGCAGTTGCACATCTTGTTCGAGACTTCGGAGAATTGAAACAGAACCTGGTTGATTTGAATCGCCGCTTGAAGGACAGTGACCCAGAACCAGAACCACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

184

Amino Acids

20.48

Weight (kDa)

5.88

Isoelectric Point (pI)

42.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	426
AarI	CACCTGC	1 cut(s)	404
Acc36I	ACCTGC	1 cut(s)	404
AciI	CCGC	2 cut(s)	174, 517
AfiI	CCNNNNNNNGG	1 cut(s)	523
AgsI	TTSAA	3 cut(s)	490, 511, 523
AjnI	CCWGG	1 cut(s)	498
AluBI	AGCT	1 cut(s)	257
AluI	AGCT	1 cut(s)	257
Alw21I	GWGCWC	1 cut(s)	395
Alw26I	GTCTC	4 cut(s)	165, 206, 235, 468
Alw44I	GTGCAC	1 cut(s)	391
AlwNI	CAGNNNCTG	2 cut(s)	34, 499
ApaLI	GTGCAC	1 cut(s)	391
ApeKI	GCWGC	1 cut(s)	257
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	349
AvaII	GGWCC	1 cut(s)	349
AxyI	CCTNAGG	1 cut(s)	63
BaeGI	GKGCMC	1 cut(s)	395
BbsI	GAAGAC	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	395
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	1 cut(s)	238
BceAI	ACGGC	1 cut(s)	196
BciT130I	CCWGG	1 cut(s)	500
BcoDI	GTCTC	4 cut(s)	165, 206, 235, 468
BfmI	CTRYAG	1 cut(s)	81
BfoI	RGCGCY	1 cut(s)	60
BfuAI	ACCTGC	1 cut(s)	404
BisI	GCNGC	2 cut(s)	258, 517
BlsI	GCNGC	2 cut(s)	259, 518
Bme1390I	CCNGG	1 cut(s)	500
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	349
BmrFI	CCNGG	1 cut(s)	500
BmsI	GCATC	2 cut(s)	359, 381
BpiI	GAAGAC	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	128
BsaBI	GATNNNNATC	1 cut(s)	510
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
Bse21I	CCTNAGG	1 cut(s)	63
Bse8I	GATNNNNATC	1 cut(s)	510
BseBI	CCWGG	1 cut(s)	500
BseGI	GGATG	1 cut(s)	374
BseJI	GATNNNNATC	1 cut(s)	510
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseMII	CTCAG	2 cut(s)	41, 77
BseRI	GAGGAG	1 cut(s)	51
BseSI	GKGCMC	1 cut(s)	395
BseXI	GCAGC	1 cut(s)	244
BsgI	GTGCAG	1 cut(s)	474
BsiHKAI	GWGCWC	1 cut(s)	395
BsiSI	CCGG	1 cut(s)	5
BslFI	GGGAC	2 cut(s)	261, 313
BslI	CCNNNNNNNGG	1 cut(s)	523
BsmAI	GTCTC	4 cut(s)	165, 206, 235, 468
BsmBI	CGTCTC	1 cut(s)	235
BsmFI	GGGAC	2 cut(s)	261, 313
Bsp1286I	GDGCHC	1 cut(s)	395
Bsp143I	GATC	1 cut(s)	9
BspACI	CCGC	2 cut(s)	174, 517
BspCNI	CTCAG	2 cut(s)	40, 76
BspMI	ACCTGC	1 cut(s)	404
BssMI	GATC	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	500
Bst4CI	ACNGT	1 cut(s)	530
Bst6I	CTCTTC	3 cut(s)	206, 386, 449
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	3 cut(s)	27, 63, 124
BstF5I	GGATG	1 cut(s)	374
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	1 cut(s)	12
BstMAI	GTCTC	4 cut(s)	165, 206, 235, 468
BstMBI	GATC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	1 cut(s)	405
BstNI	CCWGG	1 cut(s)	500
BstNSI	RCATGY	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	498
BstSFI	CTRYAG	1 cut(s)	81
BstSLI	GKGCMC	1 cut(s)	395
BstV1I	GCAGC	1 cut(s)	244
BstV2I	GAAGAC	1 cut(s)	288
Bsu36I	CCTNAGG	1 cut(s)	63
BtgZI	GCGATG	1 cut(s)	358
BtsCI	GGATG	1 cut(s)	374
BtsIMutI	CAGTG	2 cut(s)	535, 550
BveI	ACCTGC	1 cut(s)	404
Cac8I	GCNNGC	1 cut(s)	262
CaiI	CAGNNNCTG	2 cut(s)	34, 499
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	349
CseI	GACGC	1 cut(s)	20
CsiI	ACCWGGT	1 cut(s)	498
CviAII	CATG	2 cut(s)	216, 295
CviJI	RGCY	2 cut(s)	129, 257
CviKI_1	RGCY	2 cut(s)	129, 257
DdeI	CTNAG	3 cut(s)	27, 63, 124
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
Eam1104I	CTCTTC	3 cut(s)	206, 386, 449
EarI	CTCTTC	3 cut(s)	206, 386, 449
Eco47I	GGWCC	1 cut(s)	349
Eco81I	CCTNAGG	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	498
EcoT22I	ATGCAT	1 cut(s)	374
Esp3I	CGTCTC	1 cut(s)	235
FaeI	CATG	2 cut(s)	219, 298
FaqI	GGGAC	2 cut(s)	261, 313
FatI	CATG	2 cut(s)	215, 294
FauNDI	CATATG	1 cut(s)	166
Fnu4HI	GCNGC	2 cut(s)	258, 517
FokI	GGATG	1 cut(s)	381
Fsp4HI	GCNGC	2 cut(s)	258, 517
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	2 cut(s)	258, 517
HaeII	RGCGCY	1 cut(s)	60
HapII	CCGG	1 cut(s)	5
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	219, 298
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HinfI	GANTC	2 cut(s)	249, 511
HpaII	CCGG	1 cut(s)	5
Hpy166II	GTNNAC	1 cut(s)	393
Hpy188I	TCNGA	3 cut(s)	189, 368, 482
Hpy188III	TCNNGA	3 cut(s)	35, 412, 473
Hpy8I	GTNNAC	1 cut(s)	393
HpyAV	CCTTC	1 cut(s)	517
HpyCH4III	ACNGT	1 cut(s)	530
HpyCH4V	TGCA	5 cut(s)	94, 372, 393, 455, 461
HpyF10VI	GCNNNNNNNGC	1 cut(s)	405
HpyF3I	CTNAG	3 cut(s)	27, 63, 124
Hsp92II	CATG	2 cut(s)	219, 298
HspAI	GCGC	1 cut(s)	57
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	1 cut(s)	64
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	2 cut(s)	359, 381
MabI	ACCWGGT	1 cut(s)	498
MaeIII	GTNAC	2 cut(s)	85, 530
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MboII	GAAGA	5 cut(s)	193, 293, 373, 376, 436
MhlI	GDGCHC	1 cut(s)	395
MluCI	AATT	2 cut(s)	303, 485
MlyI	GAGTC	1 cut(s)	243
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	6 cut(s)	34, 46, 72, 146, 209, 320
Mph1103I	ATGCAT	1 cut(s)	374
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	1 cut(s)	188
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	500
MvaI	CCWGG	1 cut(s)	500
MwoI	GCNNNNNNNGC	1 cut(s)	405
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	2 cut(s)	219, 298
NmuCI	GTSAC	2 cut(s)	85, 530
NsiI	ATGCAT	1 cut(s)	374
NspI	RCATGY	1 cut(s)	219
PaqCI	CACCTGC	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	511
PkrI	GCNGC	2 cut(s)	259, 518
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
PsiI	TTATAA	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	498
PspGI	CCWGG	1 cut(s)	498
PspPI	GGNCC	1 cut(s)	349
PstNI	CAGNNNCTG	2 cut(s)	34, 499
RseI	CAYNNNNRTG	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	2 cut(s)	258, 517
Sau3AI	GATC	1 cut(s)	9
Sau96I	GGNCC	1 cut(s)	349
SchI	GAGTC	1 cut(s)	243
ScrFI	CCNGG	1 cut(s)	500
SduI	GDGCHC	1 cut(s)	395
SetI	ASST	8 cut(s)	26, 92, 201, 259, 288, 312, 398, 501
SexAI	ACCWGGT	1 cut(s)	498
SfaNI	GCATC	2 cut(s)	359, 381
SfcI	CTRYAG	1 cut(s)	81
SinI	GGWCC	1 cut(s)	349
SmiMI	CAYNNNNRTG	1 cut(s)	188
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	2 cut(s)	303, 485
SsiI	CCGC	2 cut(s)	174, 517
StyD4I	CCNGG	1 cut(s)	498
TaaI	ACNGT	1 cut(s)	530
TaqI	TCGA	1 cut(s)	472
TasI	AATT	2 cut(s)	303, 485
TauI	GCSGC	1 cut(s)	519
TfiI	GAWTC	1 cut(s)	511
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	1 cut(s)	535
TseFI	GTSAC	2 cut(s)	85, 530
TseI	GCWGC	1 cut(s)	257
Tsp45I	GTSAC	2 cut(s)	85, 530
TspDTI	ATGAA	4 cut(s)	91, 193, 305, 311
TspRI	CASTG	1 cut(s)	535
VneI	GTGCAC	1 cut(s)	391
VpaK11BI	GGWCC	1 cut(s)	349
XceI	RCATGY	1 cut(s)	219
Zsp2I	ATGCAT	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.