FvH4_7g07791

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000247
Physical Location & Seq
Forward (+)
7692247 .. 7693463
1217 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g07791.t1

Sequence Viewer

Length: 597 bp
ATGCCTACCGTTGGGATTGATGAAGAACGTCAACCAATAAGGGAACTACACGAGTATATCTTCATGCCCCTGATAGGCATCCTAGGCTTGCTCCTCCAAGTGAAACACGCAGCTGAGAGTGCTTCTCTGTTTGTAACAGAACATGTTACTATGCTGACATTCATTGTCGTCTTCATTGTTTACTTTGGGCTGTTGACTGTTAAGCTATTCTCCCGACCTACCCGTAACTCCAACATGGCCAAATTCATGACAAACATTACACTCCTGTCCGGAAGTCTTGCCTCAATTTTACTATTGAAGATACTCGTTCCAGCTTATGGGTGGTTAGCTCTCTTCTTCTGGATGATTTATCTTATCAGGGATGTTGTAACCAAGAAGTCATATTGGAGGGCTCTCGTTCATGTCTTCCGAAAAGTTAGAGTGCTGATTTGTGGCTCATCAGCGGCGGAGAGTAATGTCGACGTGCAACCCCCACCGGTGCCGGAAGTCGTGGTACCAATACAAGATGCAAGACAAAGAACAATGGAGGAGCCTAACGAGCCTCGTCCTACACCACTGCCCGATGCCGTTAGCCAGCCAGCAGGATTGCCTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.27

Weight (kDa)

8.76

Isoelectric Point (pI)

45.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 493
AccB1I GGYRCC 2 cut(s) 478, 493
AccB7I CCANNNNNTGG 1 cut(s) 317
AccI GTMKAC 1 cut(s) 459
AccIII TCCGGA 1 cut(s) 269
AciI CCGC 2 cut(s) 443, 446
AcoI YGGCCR 1 cut(s) 237
AcsI RAATTY 1 cut(s) 242
AfaI GTAC 1 cut(s) 495
AfiI CCNNNNNNNGG 3 cut(s) 11, 74, 317
AflIII ACRYGT 1 cut(s) 142
AgeI ACCGGT 1 cut(s) 475
AgsI TTSAA 1 cut(s) 298
AjiI CACGTC 1 cut(s) 463
AluBI AGCT 4 cut(s) 113, 205, 314, 329
AluI AGCT 4 cut(s) 113, 205, 314, 329
Aor13HI TCCGGA 1 cut(s) 269
AoxI GGCC 1 cut(s) 237
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 242
AsiGI ACCGGT 1 cut(s) 475
Asp718I GGTACC 1 cut(s) 493
AspA2I CCTAGG 1 cut(s) 82
AvrII CCTAGG 1 cut(s) 82
BalI TGGCCA 1 cut(s) 239
BanI GGYRCC 2 cut(s) 478, 493
BanII GRGCYC 1 cut(s) 394
BarI GAAGNNNNNNTAC 2 cut(s) 477, 509
BauI CACGAG 1 cut(s) 50
BbsI GAAGAC 2 cut(s) 163, 397
BbvI GCAGC 1 cut(s) 122
BceAI ACGGC 1 cut(s) 551
BfaI CTAG 1 cut(s) 83
BisI GCNGC 2 cut(s) 111, 444
BlnI CCTAGG 1 cut(s) 82
BlsI GCNGC 2 cut(s) 112, 445
BmgBI CACGTC 1 cut(s) 463
BmiI GGNNCC 3 cut(s) 480, 495, 531
BmsI GCATC 3 cut(s) 87, 496, 553
BpiI GAAGAC 2 cut(s) 163, 397
BplI GAGNNNNNCTC 2 cut(s) 109, 141
BsaBI GATNNNNATC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 82
BsaWI WCCGGW 2 cut(s) 269, 475
Bsc4I CCNNNNNNNGG 3 cut(s) 11, 74, 317
Bse118I RCCGGY 1 cut(s) 475
Bse8I GATNNNNATC 1 cut(s) 77
BseAI TCCGGA 1 cut(s) 269
BseDI CCNNGG 1 cut(s) 82
BseGI GGATG 3 cut(s) 78, 348, 367
BseJI GATNNNNATC 1 cut(s) 77
BseLI CCNNNNNNNGG 3 cut(s) 11, 74, 317
BseMII CTCAG 1 cut(s) 105
BseRI GAGGAG 2 cut(s) 83, 542
BseXI GCAGC 1 cut(s) 122
BshFI GGCC 1 cut(s) 239
BshNI GGYRCC 2 cut(s) 478, 493
BshTI ACCGGT 1 cut(s) 475
BsiSI CCGG 3 cut(s) 270, 476, 482
BslI CCNNNNNNNGG 3 cut(s) 11, 74, 317
BsnI GGCC 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 394
Bsp13I TCCGGA 1 cut(s) 269
BspACI CCGC 2 cut(s) 443, 446
BspANI GGCC 1 cut(s) 239
BspCNI CTCAG 1 cut(s) 106
BspEI TCCGGA 1 cut(s) 269
BspHI TCATGA 1 cut(s) 246
BspLI GGNNCC 3 cut(s) 480, 495, 531
BspT107I GGYRCC 2 cut(s) 478, 493
BsrFI RCCGGY 1 cut(s) 475
BssAI RCCGGY 1 cut(s) 475
BssECI CCNNGG 1 cut(s) 82
BssSI CACGAG 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 82
Bst2BI CACGAG 1 cut(s) 50
Bst4CI ACNGT 2 cut(s) 10, 199
Bst6I CTCTTC 1 cut(s) 338
BstC8I GCNNGC 3 cut(s) 89, 575, 579
BstDEI CTNAG 1 cut(s) 114
BstF5I GGATG 3 cut(s) 78, 348, 367
BstMWI GCNNNNNNNGC 3 cut(s) 84, 119, 538
BstNSI RCATGY 1 cut(s) 146
BstV1I GCAGC 1 cut(s) 122
BstV2I GAAGAC 2 cut(s) 163, 397
BsuRI GGCC 1 cut(s) 239
BtrI CACGTC 1 cut(s) 463
BtsCI GGATG 3 cut(s) 78, 348, 367
BtsI GCAGTG 1 cut(s) 554
BtsIMutI CAGTG 1 cut(s) 554
Cac8I GCNNGC 3 cut(s) 89, 575, 579
CciI TCATGA 1 cut(s) 246
Cfr10I RCCGGY 1 cut(s) 475
Csp6I GTAC 1 cut(s) 494
CspAI ACCGGT 1 cut(s) 475
CviAII CATG 5 cut(s) 64, 143, 235, 247, 401
CviQI GTAC 1 cut(s) 494
DdeI CTNAG 1 cut(s) 114
EaeI YGGCCR 1 cut(s) 237
Eam1104I CTCTTC 1 cut(s) 338
EarI CTCTTC 1 cut(s) 338
EciI GGCGGA 1 cut(s) 461
Eco130I CCWWGG 1 cut(s) 82
Eco24I GRGCYC 1 cut(s) 394
EcoT14I CCWWGG 1 cut(s) 82
EcoT38I GRGCYC 1 cut(s) 394
ErhI CCWWGG 1 cut(s) 82
FaeI CATG 5 cut(s) 67, 146, 238, 250, 404
FatI CATG 5 cut(s) 63, 142, 234, 246, 400
FblI GTMKAC 1 cut(s) 459
Fnu4HI GCNGC 2 cut(s) 111, 444
FokI GGATG 3 cut(s) 65, 355, 374
FriOI GRGCYC 1 cut(s) 394
Fsp4HI GCNGC 2 cut(s) 111, 444
FspBI CTAG 1 cut(s) 83
GluI GCNGC 2 cut(s) 111, 444
HaeIII GGCC 1 cut(s) 239
HapII CCGG 3 cut(s) 270, 476, 482
Hin1II CATG 5 cut(s) 67, 146, 238, 250, 404
HincII GTYRAC 3 cut(s) 32, 195, 460
HindII GTYRAC 3 cut(s) 32, 195, 460
HpaII CCGG 3 cut(s) 270, 476, 482
Hpy166II GTNNAC 4 cut(s) 32, 181, 195, 460
Hpy188I TCNGA 1 cut(s) 410
Hpy188III TCNNGA 4 cut(s) 213, 247, 270, 340
Hpy8I GTNNAC 4 cut(s) 32, 181, 195, 460
Hpy99I CGWCG 1 cut(s) 464
HpyCH4III ACNGT 2 cut(s) 10, 199
HpyCH4IV ACGT 2 cut(s) 28, 462
HpyCH4V TGCA 2 cut(s) 466, 509
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 119, 538
HpyF3I CTNAG 1 cut(s) 114
HpySE526I ACGT 2 cut(s) 28, 462
Hsp92II CATG 5 cut(s) 67, 146, 238, 250, 404
Kpn2I TCCGGA 1 cut(s) 269
KpnI GGTACC 1 cut(s) 497
LmnI GCTCC 2 cut(s) 96, 529
Lsp1109I GCAGC 1 cut(s) 122
LweI GCATC 3 cut(s) 87, 496, 553
MaeI CTAG 1 cut(s) 83
MaeII ACGT 2 cut(s) 28, 462
MaeIII GTNAC 4 cut(s) 133, 145, 224, 367
MboII GAAGA 7 cut(s) 35, 52, 163, 310, 325, 328, 397
MhlI GDGCHC 1 cut(s) 394
MlsI TGGCCA 1 cut(s) 239
MluCI AATT 2 cut(s) 242, 285
MluNI TGGCCA 1 cut(s) 239
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 5 cut(s) 104, 292, 381, 520, 552
Mox20I TGGCCA 1 cut(s) 239
MroI TCCGGA 1 cut(s) 269
MscI TGGCCA 1 cut(s) 239
MseI TTAA 1 cut(s) 201
Msp20I TGGCCA 1 cut(s) 239
MspA1I CMGCKG 2 cut(s) 113, 443
MspI CCGG 3 cut(s) 270, 476, 482
MwoI GCNNNNNNNGC 3 cut(s) 84, 119, 538
NlaIII CATG 5 cut(s) 67, 146, 238, 250, 404
NlaIV GGNNCC 3 cut(s) 480, 495, 531
NspI RCATGY 1 cut(s) 146
PagI TCATGA 1 cut(s) 246
PciI ACATGT 1 cut(s) 142
PflMI CCANNNNNTGG 1 cut(s) 317
PinAI ACCGGT 1 cut(s) 475
PkrI GCNGC 2 cut(s) 112, 445
PscI ACATGT 1 cut(s) 142
PspN4I GGNNCC 3 cut(s) 480, 495, 531
PvuII CAGCTG 1 cut(s) 113
RsaI GTAC 1 cut(s) 495
RsaNI GTAC 1 cut(s) 494
SalI GTCGAC 1 cut(s) 458
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 2 cut(s) 111, 444
SduI GDGCHC 1 cut(s) 394
SetI ASST 7 cut(s) 31, 115, 207, 220, 316, 331, 465
SfaNI GCATC 3 cut(s) 87, 496, 553
SgrAI CRCCGGYG 1 cut(s) 475
Sse9I AATT 2 cut(s) 242, 285
SsiI CCGC 2 cut(s) 443, 446
SspMI CTAG 1 cut(s) 83
StyI CCWWGG 1 cut(s) 82
TaaI ACNGT 2 cut(s) 10, 199
TaiI ACGT 2 cut(s) 31, 465
TaqI TCGA 1 cut(s) 459
TasI AATT 2 cut(s) 242, 285
TauI GCSGC 1 cut(s) 446
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 1 cut(s) 561
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 6 cut(s) 36, 52, 151, 163, 235, 389
TspRI CASTG 1 cut(s) 561
Van91I CCANNNNNTGG 1 cut(s) 317
XapI RAATTY 1 cut(s) 242
XceI RCATGY 1 cut(s) 146
XcmI CCANNNNNNNNNTGG 1 cut(s) 318
XmaJI CCTAGG 1 cut(s) 82
XmiI GTMKAC 1 cut(s) 459
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.