Rh5AG445300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
76546438 .. 76546815
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG445300.1

Sequence Viewer

Length: 342 bp
ATGAACAAGATCAGCATCTTGCTTGGAACTCTTGCTTCCCTTTTACTATTCTTCATCCTCTTTCCACTTGTTGGACGGGACATAACATTGTCCTACCAGTACTTAAAATCAGTCTATCAAAGTGCAGCCGCAAGACTTGTTCGTACCTTTGACAGACTGAAGGAGATGATCATTGTTGTGGGTGGCCACTTGGTGGAGTATTTGAAAAGATTGTATGCTGGTGCAGTTTCAGTGCTTGTTCGTACCTTTAACAATTTGAAAGAGCTTATCACAATCGTGAGAAATGGCCGCTTCATAGAGCAGGAAGCTGAGGACCGGAACAATGGCCTACCTGCAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.8

Weight (kDa)

9.81

Isoelectric Point (pI)

31.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 71, 193
AciI CCGC 2 cut(s) 129, 289
AcoI YGGCCR 2 cut(s) 184, 286
AcuI CTGAAG 1 cut(s) 179
AdeI CACNNNGTG 1 cut(s) 193
AfaI GTAC 3 cut(s) 101, 145, 244
AfiI CCNNNNNNNGG 2 cut(s) 71, 193
AgsI TTSAA 2 cut(s) 205, 259
AleI CACNNNNGTG 1 cut(s) 275
AluBI AGCT 2 cut(s) 265, 308
AluI AGCT 2 cut(s) 265, 308
AoxI GGCC 3 cut(s) 184, 286, 325
ApeKI GCWGC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 313
AvaII GGWCC 1 cut(s) 313
BalI TGGCCA 1 cut(s) 186
BbvCI CCTCAGC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 137
BclI TGATCA 1 cut(s) 168
BfmI CTRYAG 1 cut(s) 333
BisI GCNGC 3 cut(s) 126, 129, 289
BlsI GCNGC 3 cut(s) 127, 130, 290
BmcAI AGTACT 1 cut(s) 101
Bme18I GGWCC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 313
BmsI GCATC 1 cut(s) 24
Bpu10I CCTNAGC 1 cut(s) 309
BsaBI GATNNNNATC 1 cut(s) 14
BsaWI WCCGGW 1 cut(s) 315
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 193
Bse1I ACTGG 1 cut(s) 97
Bse8I GATNNNNATC 1 cut(s) 14
BseGI GGATG 1 cut(s) 54
BseJI GATNNNNATC 1 cut(s) 14
BseLI CCNNNNNNNGG 2 cut(s) 71, 193
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 1 cut(s) 97
BseXI GCAGC 1 cut(s) 137
BsgI GTGCAG 2 cut(s) 144, 243
BshFI GGCC 3 cut(s) 186, 288, 327
BsiSI CCGG 1 cut(s) 316
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 2 cut(s) 71, 193
BsmFI GGGAC 1 cut(s) 92
BsnI GGCC 3 cut(s) 186, 288, 327
Bsp143I GATC 2 cut(s) 9, 168
BspACI CCGC 2 cut(s) 129, 289
BspANI GGCC 3 cut(s) 186, 288, 327
BspCNI CTCAG 1 cut(s) 301
BspMAI CTGCAG 1 cut(s) 337
BsrI ACTGG 1 cut(s) 97
BssMI GATC 2 cut(s) 9, 168
BstDEI CTNAG 1 cut(s) 309
BstF5I GGATG 1 cut(s) 54
BstKTI GATC 2 cut(s) 12, 171
BstMBI GATC 2 cut(s) 9, 168
BstSFI CTRYAG 1 cut(s) 333
BstV1I GCAGC 1 cut(s) 137
BsuRI GGCC 3 cut(s) 186, 288, 327
BtsCI GGATG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 237
Cfr13I GGNCC 1 cut(s) 313
Csp6I GTAC 3 cut(s) 100, 144, 243
CviJI RGCY 6 cut(s) 128, 186, 265, 288, 308, 327
CviKI_1 RGCY 6 cut(s) 128, 186, 265, 288, 308, 327
CviQI GTAC 3 cut(s) 100, 144, 243
DdeI CTNAG 1 cut(s) 309
DpnI GATC 2 cut(s) 11, 170
DpnII GATC 2 cut(s) 9, 168
DraIII CACNNNGTG 1 cut(s) 193
EaeI YGGCCR 2 cut(s) 184, 286
Eco47I GGWCC 1 cut(s) 313
Eco57I CTGAAG 1 cut(s) 179
FaiI YATR 3 cut(s) 83, 216, 296
FaqI GGGAC 1 cut(s) 92
FbaI TGATCA 1 cut(s) 168
Fnu4HI GCNGC 3 cut(s) 126, 129, 289
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 3 cut(s) 126, 129, 289
GluI GCNGC 3 cut(s) 126, 129, 289
HaeIII GGCC 3 cut(s) 186, 288, 327
HapII CCGG 1 cut(s) 316
HpaII CCGG 1 cut(s) 316
Hpy188III TCNNGA 1 cut(s) 277
HpyAV CCTTC 1 cut(s) 154
HpyCH4V TGCA 3 cut(s) 125, 224, 335
HpyF3I CTNAG 1 cut(s) 309
Ksp22I TGATCA 1 cut(s) 168
Kzo9I GATC 2 cut(s) 9, 168
LpnPI CCDG 4 cut(s) 110, 204, 287, 329
Lsp1109I GCAGC 1 cut(s) 137
LweI GCATC 1 cut(s) 24
MalI GATC 2 cut(s) 11, 170
MboI GATC 2 cut(s) 9, 168
MboII GAAGA 1 cut(s) 43
MlsI TGGCCA 1 cut(s) 186
MluCI AATT 1 cut(s) 253
MluNI TGGCCA 1 cut(s) 186
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 2 cut(s) 68, 304
Mox20I TGGCCA 1 cut(s) 186
MscI TGGCCA 1 cut(s) 186
MseI TTAA 3 cut(s) 104, 249, 340
MslI CAYNNNNRTG 2 cut(s) 176, 275
Msp20I TGGCCA 1 cut(s) 186
MspI CCGG 1 cut(s) 316
NdeII GATC 2 cut(s) 9, 168
OliI CACNNNNGTG 1 cut(s) 275
PflMI CCANNNNNTGG 2 cut(s) 71, 193
PkrI GCNGC 3 cut(s) 127, 130, 290
PspPI GGNCC 1 cut(s) 313
PstI CTGCAG 1 cut(s) 337
RsaI GTAC 3 cut(s) 101, 145, 244
RsaNI GTAC 3 cut(s) 100, 144, 243
RseI CAYNNNNRTG 2 cut(s) 176, 275
SaqAI TTAA 3 cut(s) 104, 249, 340
SatI GCNGC 3 cut(s) 126, 129, 289
Sau3AI GATC 2 cut(s) 9, 168
Sau96I GGNCC 1 cut(s) 313
ScaI AGTACT 1 cut(s) 101
SetI ASST 5 cut(s) 149, 248, 267, 310, 334
SfaNI GCATC 1 cut(s) 24
SfcI CTRYAG 1 cut(s) 333
SinI GGWCC 1 cut(s) 313
SmiMI CAYNNNNRTG 2 cut(s) 176, 275
Sse9I AATT 1 cut(s) 253
SsiI CCGC 2 cut(s) 129, 289
TasI AATT 1 cut(s) 253
TatI WGTACW 1 cut(s) 99
TauI GCSGC 2 cut(s) 131, 291
Tru1I TTAA 3 cut(s) 104, 249, 340
Tru9I TTAA 3 cut(s) 104, 249, 340
TscAI CASTG 1 cut(s) 237
TseI GCWGC 1 cut(s) 125
TspDTI ATGAA 3 cut(s) 17, 43, 283
TspRI CASTG 1 cut(s) 237
Van91I CCANNNNNTGG 2 cut(s) 71, 193
VpaK11BI GGWCC 1 cut(s) 313
ZrmI AGTACT 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.