Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Reverse (-)

82323631 .. 82323981

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG592400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAATAGGATTAGCATCTTGCTTGGAACTCTGGCATCTATTTTAGAGTTGCTCATCCTATTTCCACCTTTTGGATGGGTCGCACTCTTCTTCTGGAGCATCTGTTTCGTTACCCTTGCGATTAAGTCATGCCAATACTTGAAAACACTATGTGAAAGTGCAGTTGCAGCTCTTGTTGTAACCTTGGGTGAATTCCAAGTGAAGCTGATCGCAATGAATGGCCGCTTGATGGGAAGTAGCGCAGTTGCAGGACTCGGTCGTGCTTATGAGAAATTGACGGAGCTGATCAAGAGGAGCCGCTATTCGACAGAGCATGAAACCAAGGAACAGAGCAAGGAGATACCGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

116

Amino Acids

12.88

Weight (kDa)

8.88

Isoelectric Point (pI)

34.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	71
AciI	CCGC	2 cut(s)	223, 298
AcoI	YGGCCR	1 cut(s)	220
AcsI	RAATTY	1 cut(s)	191
AdeI	CACNNNGTG	1 cut(s)	152
AfiI	CCNNNNNNNGG	2 cut(s)	71, 229
AgeI	ACCGGT	1 cut(s)	343
AgsI	TTSAA	1 cut(s)	142
AluBI	AGCT	3 cut(s)	170, 205, 283
AluI	AGCT	3 cut(s)	170, 205, 283
AoxI	GGCC	1 cut(s)	220
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	1 cut(s)	191
AsiGI	ACCGGT	1 cut(s)	343
AspLEI	GCGC	1 cut(s)	242
AsuHPI	GGTGA	1 cut(s)	200
BaeI	ACNNNNGTAYC	1 cut(s)	332
BbvI	GCAGC	1 cut(s)	179
BccI	CCATC	2 cut(s)	69, 223
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BclI	TGATCA	1 cut(s)	285
BisI	GCNGC	3 cut(s)	168, 223, 298
BlsI	GCNGC	3 cut(s)	169, 224, 299
BmiI	GGNNCC	1 cut(s)	296
BmsI	GCATC	3 cut(s)	24, 44, 108
BpmI	CTGGAG	1 cut(s)	115
BsaBI	GATNNNNATC	1 cut(s)	14
BsaJI	CCNNGG	2 cut(s)	183, 321
BsaWI	WCCGGW	1 cut(s)	343
BsaXI	ACNNNNNCTCC	2 cut(s)	88, 118
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 229
Bse118I	RCCGGY	1 cut(s)	343
Bse3DI	GCAATG	1 cut(s)	219
Bse8I	GATNNNNATC	1 cut(s)	14
BseDI	CCNNGG	2 cut(s)	183, 321
BseGI	GGATG	2 cut(s)	54, 80
BseJI	GATNNNNATC	1 cut(s)	14
BseLI	CCNNNNNNNGG	2 cut(s)	71, 229
BseMI	GCAATG	1 cut(s)	219
BseRI	GAGGAG	1 cut(s)	307
BseXI	GCAGC	1 cut(s)	179
BsgI	GTGCAG	1 cut(s)	180
Bsh1285I	CGRYCG	1 cut(s)	259
BshFI	GGCC	1 cut(s)	222
BshTI	ACCGGT	1 cut(s)	343
BsiEI	CGRYCG	1 cut(s)	259
BsiSI	CCGG	1 cut(s)	344
BslI	CCNNNNNNNGG	2 cut(s)	71, 229
BsnI	GGCC	1 cut(s)	222
Bsp143I	GATC	2 cut(s)	207, 285
BspACI	CCGC	2 cut(s)	223, 298
BspANI	GGCC	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	219
BsrFI	RCCGGY	1 cut(s)	343
BssAI	RCCGGY	1 cut(s)	343
BssECI	CCNNGG	2 cut(s)	183, 321
BssMI	GATC	2 cut(s)	207, 285
BssT1I	CCWWGG	2 cut(s)	183, 321
Bst6I	CTCTTC	1 cut(s)	92
BstF5I	GGATG	2 cut(s)	54, 80
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	2 cut(s)	210, 288
BstMBI	GATC	2 cut(s)	207, 285
BstMCI	CGRYCG	1 cut(s)	259
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	54, 80
CfoI	GCGC	1 cut(s)	242
Cfr10I	RCCGGY	1 cut(s)	343
CspAI	ACCGGT	1 cut(s)	343
CviAII	CATG	2 cut(s)	129, 314
CviJI	RGCY	5 cut(s)	170, 205, 222, 283, 297
CviKI_1	RGCY	5 cut(s)	170, 205, 222, 283, 297
DpnI	GATC	2 cut(s)	209, 287
DpnII	GATC	2 cut(s)	207, 285
DraIII	CACNNNGTG	1 cut(s)	152
EaeI	YGGCCR	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Eco130I	CCWWGG	2 cut(s)	183, 321
EcoRI	GAATTC	1 cut(s)	191
EcoT14I	CCWWGG	2 cut(s)	183, 321
ErhI	CCWWGG	2 cut(s)	183, 321
FaeI	CATG	2 cut(s)	132, 317
FaiI	YATR	4 cut(s)	130, 151, 267, 315
FatI	CATG	2 cut(s)	128, 313
FbaI	TGATCA	1 cut(s)	285
Fnu4HI	GCNGC	3 cut(s)	168, 223, 298
FokI	GGATG	2 cut(s)	41, 87
Fsp4HI	GCNGC	3 cut(s)	168, 223, 298
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	3 cut(s)	168, 223, 298
GsuI	CTGGAG	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	222
HapII	CCGG	1 cut(s)	344
HhaI	GCGC	1 cut(s)	242
Hin1II	CATG	2 cut(s)	132, 317
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HinfI	GANTC	1 cut(s)	252
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	1 cut(s)	200
Hpy188III	TCNNGA	2 cut(s)	94, 289
HpyCH4V	TGCA	3 cut(s)	161, 167, 248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
Hsp92II	CATG	2 cut(s)	132, 317
HspAI	GCGC	1 cut(s)	240
Ksp22I	TGATCA	1 cut(s)	285
Kzo9I	GATC	2 cut(s)	207, 285
LmnI	GCTCC	3 cut(s)	96, 280, 294
LpnPI	CCDG	3 cut(s)	17, 79, 234
Lsp1109I	GCAGC	1 cut(s)	179
LweI	GCATC	3 cut(s)	24, 44, 108
MaeIII	GTNAC	2 cut(s)	109, 178
MalI	GATC	2 cut(s)	209, 287
MboI	GATC	2 cut(s)	207, 285
MboII	GAAGA	2 cut(s)	79, 82
MluCI	AATT	2 cut(s)	191, 272
MlyI	GAGTC	1 cut(s)	246
MnlI	CCTC	1 cut(s)	285
MseI	TTAA	1 cut(s)	123
MspI	CCGG	1 cut(s)	344
MwoI	GCNNNNNNNGC	1 cut(s)	167
NdeII	GATC	2 cut(s)	207, 285
NlaIII	CATG	2 cut(s)	132, 317
NlaIV	GGNNCC	1 cut(s)	296
PflFI	GACNNNGTC	1 cut(s)	255
PflMI	CCANNNNNTGG	1 cut(s)	71
PinAI	ACCGGT	1 cut(s)	343
PkrI	GCNGC	3 cut(s)	169, 224, 299
PleI	GAGTC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	296
PsyI	GACNNNGTC	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	3 cut(s)	168, 223, 298
Sau3AI	GATC	2 cut(s)	207, 285
SchI	GAGTC	1 cut(s)	246
SetI	ASST	5 cut(s)	70, 172, 185, 207, 285
SfaNI	GCATC	3 cut(s)	24, 44, 108
Sse9I	AATT	2 cut(s)	191, 272
SsiI	CCGC	2 cut(s)	223, 298
StyI	CCWWGG	2 cut(s)	183, 321
TaqI	TCGA	1 cut(s)	305
TaqII	GACCGA	1 cut(s)	245
TasI	AATT	2 cut(s)	191, 272
TauI	GCSGC	2 cut(s)	225, 300
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TseI	GCWGC	1 cut(s)	167
TspDTI	ATGAA	3 cut(s)	17, 230, 330
TspGWI	ACGGA	1 cut(s)	293
Tth111I	GACNNNGTC	1 cut(s)	255
Van91I	CCANNNNNTGG	1 cut(s)	71
XapI	RAATTY	1 cut(s)	191
XcmI	CCANNNNNNNNNTGG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.