Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Reverse (-)

81565024 .. 81565462

Gene Structure 439 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53466

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGATATTGCTGGCATTGCATGCATTCATGTTTTCTCTCATCGGAGTCTTAGGCGTCTGCCTCCAACTCAAGTTTCCAGATGTGTCTACATATGCGACGGCCTACGGCACTGTGATGATGGACCTCATCATTATTGAGACATGCTTTTACATGGTCTCTTTAGTAGTGATGGGAATCCTAGCTGCTCGCAATAATACAGATTATGATCGAAGATCTGATGAACAAAATTTGCCTCTTACTTGGAAGTCTGTCCCTGATTTTAGAGTTGCTCATCCTTATTTCACCATTCGGATGGATTGCACTCTTCTTCTGGACCACCTACCTTTTATGCTTCGTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

113

Amino Acids

12.98

Weight (kDa)

5.46

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	86
AcsI	RAATTY	1 cut(s)	226
AcyI	GRCGYC	1 cut(s)	54
AjuI	GAANNNNNNNTTGG	2 cut(s)	57, 89
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
Alw26I	GTCTC	2 cut(s)	131, 160
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	226
AspS9I	GGNCC	2 cut(s)	121, 313
AsuHPI	GGTGA	1 cut(s)	274
AvaII	GGWCC	2 cut(s)	121, 313
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	3 cut(s)	112, 163, 286
BceAI	ACGGC	2 cut(s)	114, 121
BcoDI	GTCTC	2 cut(s)	131, 160
BfaI	CTAG	1 cut(s)	179
BglII	AGATCT	1 cut(s)	212
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
Bme18I	GGWCC	2 cut(s)	121, 313
BmgT120I	GGNCC	2 cut(s)	121, 313
BpuEI	CTTGAG	1 cut(s)	53
BsaBI	GATNNNNATC	2 cut(s)	173, 204
BsaHI	GRCGYC	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	160
Bse3DI	GCAATG	1 cut(s)	14
Bse8I	GATNNNNATC	2 cut(s)	173, 204
BseGI	GGATG	2 cut(s)	271, 297
BseJI	GATNNNNATC	2 cut(s)	173, 204
BseMI	GCAATG	1 cut(s)	14
BseXI	GCAGC	1 cut(s)	169
BshFI	GGCC	1 cut(s)	101
BslFI	GGGAC	1 cut(s)	236
BsmAI	GTCTC	2 cut(s)	131, 160
BsmFI	GGGAC	1 cut(s)	236
BsmI	GAATGC	1 cut(s)	23
BsnI	GGCC	1 cut(s)	101
Bso31I	GGTCTC	1 cut(s)	160
Bsp143I	GATC	2 cut(s)	205, 212
BspANI	GGCC	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	14
BssMI	GATC	2 cut(s)	205, 212
BssNI	GRCGYC	1 cut(s)	54
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	1 cut(s)	309
BstACI	GRCGYC	1 cut(s)	54
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstC8I	GCNNGC	3 cut(s)	12, 21, 187
BstDEI	CTNAG	1 cut(s)	49
BstF5I	GGATG	2 cut(s)	271, 297
BstKTI	GATC	2 cut(s)	208, 215
BstMAI	GTCTC	2 cut(s)	131, 160
BstMBI	GATC	2 cut(s)	205, 212
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 20
BstNSI	RCATGY	2 cut(s)	23, 144
BstV1I	GCAGC	1 cut(s)	169
BstX2I	RGATCY	1 cut(s)	212
BstXI	CCANNNNNNTGG	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	101
BtsCI	GGATG	2 cut(s)	271, 297
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	3 cut(s)	12, 21, 187
Cfr13I	GGNCC	2 cut(s)	121, 313
CseI	GACGC	1 cut(s)	43
CviAII	CATG	4 cut(s)	20, 28, 141, 151
CviJI	RGCY	2 cut(s)	101, 182
CviKI_1	RGCY	2 cut(s)	101, 182
DdeI	CTNAG	1 cut(s)	49
DpnI	GATC	2 cut(s)	207, 214
DpnII	GATC	2 cut(s)	205, 212
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	160
Eco47I	GGWCC	2 cut(s)	121, 313
EcoT22I	ATGCAT	1 cut(s)	25
FaeI	CATG	4 cut(s)	23, 31, 144, 154
FaiI	YATR	8 cut(s)	21, 29, 91, 93, 142, 152, 204, 329
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	4 cut(s)	19, 27, 140, 150
FauNDI	CATATG	1 cut(s)	91
FblI	GTMKAC	1 cut(s)	86
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	2 cut(s)	258, 304
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	1 cut(s)	179
GluI	GCNGC	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	101
HgaI	GACGC	1 cut(s)	43
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	4 cut(s)	23, 31, 144, 154
HinfI	GANTC	2 cut(s)	45, 174
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	3 cut(s)	44, 217, 291
Hpy188III	TCNNGA	3 cut(s)	77, 311, 335
Hpy8I	GTNNAC	1 cut(s)	87
Hpy99I	CGWCG	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	3 cut(s)	19, 23, 300
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 20
HpyF3I	CTNAG	1 cut(s)	49
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	4 cut(s)	23, 31, 144, 154
Kzo9I	GATC	2 cut(s)	205, 212
LpnPI	CCDG	3 cut(s)	90, 267, 296
Lsp1109I	GCAGC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	179
MalI	GATC	2 cut(s)	207, 214
MboI	GATC	2 cut(s)	205, 212
MboII	GAAGA	3 cut(s)	222, 296, 299
MflI	RGATCY	1 cut(s)	212
MluCI	AATT	1 cut(s)	226
MlyI	GAGTC	1 cut(s)	54
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	3 cut(s)	71, 134, 243
Mph1103I	ATGCAT	1 cut(s)	25
MslI	CAYNNNNRTG	2 cut(s)	113, 290
Mva1269I	GAATGC	1 cut(s)	23
MwoI	GCNNNNNNNGC	2 cut(s)	16, 20
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	2 cut(s)	205, 212
NlaIII	CATG	4 cut(s)	23, 31, 144, 154
NsiI	ATGCAT	1 cut(s)	25
NspI	RCATGY	2 cut(s)	23, 144
PaeI	GCATGC	1 cut(s)	23
PctI	GAATGC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	174
PkrI	GCNGC	1 cut(s)	184
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PspPI	GGNCC	2 cut(s)	121, 313
PsuI	RGATCY	1 cut(s)	212
RseI	CAYNNNNRTG	2 cut(s)	113, 290
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	2 cut(s)	205, 212
Sau96I	GGNCC	2 cut(s)	121, 313
SchI	GAGTC	1 cut(s)	54
SetI	ASST	4 cut(s)	126, 184, 321, 325
SinI	GGWCC	2 cut(s)	121, 313
SmiMI	CAYNNNNRTG	2 cut(s)	113, 290
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	1 cut(s)	226
SspMI	CTAG	1 cut(s)	179
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	1 cut(s)	208
TasI	AATT	1 cut(s)	226
TfiI	GAWTC	1 cut(s)	174
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	2 cut(s)	16, 234
TspRI	CASTG	1 cut(s)	115
VpaK11BI	GGWCC	2 cut(s)	121, 313
XapI	RAATTY	1 cut(s)	226
XceI	RCATGY	2 cut(s)	23, 144
XmiI	GTMKAC	1 cut(s)	86
XspI	CTAG	1 cut(s)	179
Zsp2I	ATGCAT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.