Rh2DG614900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000247
Physical Location & Seq
Reverse (-)
84602132 .. 84602644
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG614900.1

Sequence Viewer

Length: 513 bp
ATGCTAGGAATTCTCCTTCAAGTGAAGCAGGCAACCGGGAGTAAATCTCCATTTGTCACAGACCACGTTACAATGCTGACCTTTGTTGCTGTTTTCTTGATCTATATCTGGTCATTGGCAACTTACAAGTTATGTCACTTTCCCACCACAGATTTGGCCGATTTCATGGACAACATTAGCCTCTTCTTTGGATCACTTGCTCCGATCTTACTATTGCTTGTCCTCGTTCAAGCTTTCGGGTTGTTCACCCTCGGTTTGTGGATCCTGTACTTTCTTAGAGACTTTCTAACTAAGAAATCATACAGAAGGGCACTTGTTTATGTCTTGAAAAAAGTGCAAGAGCTGTTTAAAGGCCAAGAACAAAATGAGGCAGAGAATATTGTAGGATTACAAGAAGCAGGAGAGGAGAGTGGTGTACAAATACAAGAAGCAAGAGAACGGATTAAGAAATGGCCGTCTTATTTGAGACCAAATGAAGCCAAGGACCATATCAATGAGCTGCAGGAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.6

Weight (kDa)

6.3

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 199, 256, 269
AcoI YGGCCR 2 cut(s) 156, 452
AcsI RAATTY 1 cut(s) 9
AfaI GTAC 3 cut(s) 269, 417, 509
AgsI TTSAA 3 cut(s) 20, 230, 328
AluBI AGCT 3 cut(s) 233, 343, 499
AluI AGCT 3 cut(s) 233, 343, 499
Alw26I GTCTC 2 cut(s) 273, 460
AlwI GGATC 3 cut(s) 199, 256, 269
AoxI GGCC 3 cut(s) 156, 352, 452
ApeKI GCWGC 1 cut(s) 499
ApoI RAATTY 1 cut(s) 9
AspS9I GGNCC 1 cut(s) 484
AsuC2I CCSGG 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 238
AvaII GGWCC 1 cut(s) 484
BaeGI GKGCMC 1 cut(s) 313
BamHI GGATCC 1 cut(s) 261
BbvI GCAGC 1 cut(s) 486
BceAI ACGGC 1 cut(s) 439
BcnI CCSGG 1 cut(s) 37
BcoDI GTCTC 2 cut(s) 273, 460
BfaI CTAG 1 cut(s) 5
BfmI CTRYAG 1 cut(s) 500
BisI GCNGC 1 cut(s) 500
BlsI GCNGC 1 cut(s) 501
BmcAI AGTACT 1 cut(s) 509
Bme1390I CCNGG 1 cut(s) 37
Bme18I GGWCC 1 cut(s) 484
BmgT120I GGNCC 1 cut(s) 484
BmiI GGNNCC 1 cut(s) 263
BmrFI CCNGG 1 cut(s) 37
BplI GAGNNNNNCTC 2 cut(s) 31, 63
BpuMI CCSGG 1 cut(s) 37
BsaBI GATNNNNATC 1 cut(s) 104
BsaI GGTCTC 1 cut(s) 460
BsaJI CCNNGG 2 cut(s) 250, 480
Bse8I GATNNNNATC 1 cut(s) 104
BseDI CCNNGG 2 cut(s) 250, 480
BseJI GATNNNNATC 1 cut(s) 104
BseRI GAGGAG 1 cut(s) 419
BseSI GKGCMC 1 cut(s) 313
BseXI GCAGC 1 cut(s) 486
BshFI GGCC 3 cut(s) 158, 354, 454
BsiSI CCGG 1 cut(s) 36
BsmAI GTCTC 2 cut(s) 273, 460
BsnI GGCC 3 cut(s) 158, 354, 454
Bso31I GGTCTC 1 cut(s) 460
Bsp1286I GDGCHC 1 cut(s) 313
Bsp1407I TGTACA 1 cut(s) 415
Bsp143I GATC 4 cut(s) 99, 191, 204, 261
BspANI GGCC 3 cut(s) 158, 354, 454
BspLI GGNNCC 1 cut(s) 263
BspMAI CTGCAG 1 cut(s) 504
BspPI GGATC 3 cut(s) 199, 256, 269
BspTNI GGTCTC 1 cut(s) 460
BsrGI TGTACA 1 cut(s) 415
BssECI CCNNGG 2 cut(s) 250, 480
BssMI GATC 4 cut(s) 99, 191, 204, 261
BssT1I CCWWGG 1 cut(s) 480
Bst6I CTCTTC 1 cut(s) 188
BstAUI TGTACA 1 cut(s) 415
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 2 cut(s) 275, 291
BstKTI GATC 4 cut(s) 102, 194, 207, 264
BstMAI GTCTC 2 cut(s) 273, 460
BstMBI GATC 4 cut(s) 99, 191, 204, 261
BstSCI CCNGG 1 cut(s) 35
BstSFI CTRYAG 1 cut(s) 500
BstSLI GKGCMC 1 cut(s) 313
BstV1I GCAGC 1 cut(s) 486
BstX2I RGATCY 1 cut(s) 261
BstXI CCANNNNNNTGG 1 cut(s) 154
BstYI RGATCY 1 cut(s) 261
BsuRI GGCC 3 cut(s) 158, 354, 454
Cac8I GCNNGC 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 484
Csp6I GTAC 3 cut(s) 268, 416, 508
CviAII CATG 1 cut(s) 166
CviJI RGCY 8 cut(s) 158, 180, 233, 343, 354, 454, 479, 499
CviKI_1 RGCY 8 cut(s) 158, 180, 233, 343, 354, 454, 479, 499
CviQI GTAC 3 cut(s) 268, 416, 508
DdeI CTNAG 2 cut(s) 275, 291
DpnI GATC 4 cut(s) 101, 193, 206, 263
DpnII GATC 4 cut(s) 99, 191, 204, 261
DraI TTTAAA 1 cut(s) 349
EaeI YGGCCR 2 cut(s) 156, 452
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Eco130I CCWWGG 1 cut(s) 480
Eco31I GGTCTC 1 cut(s) 460
Eco47I GGWCC 1 cut(s) 484
EcoRI GAATTC 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 480
FaeI CATG 1 cut(s) 169
FaiI YATR 6 cut(s) 105, 133, 167, 301, 321, 489
FatI CATG 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 500
Fsp4HI GCNGC 1 cut(s) 500
FspBI CTAG 1 cut(s) 5
GluI GCNGC 1 cut(s) 500
HaeIII GGCC 3 cut(s) 158, 354, 454
HapII CCGG 1 cut(s) 36
Hin1II CATG 1 cut(s) 169
HindIII AAGCTT 1 cut(s) 231
HpaII CCGG 1 cut(s) 36
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 2 cut(s) 246, 416
Hpy188I TCNGA 1 cut(s) 204
Hpy188III TCNNGA 2 cut(s) 97, 325
Hpy8I GTNNAC 2 cut(s) 246, 416
HpyAV CCTTC 2 cut(s) 26, 300
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 2 cut(s) 337, 502
HpyF3I CTNAG 2 cut(s) 275, 291
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 1 cut(s) 169
Kzo9I GATC 4 cut(s) 99, 191, 204, 261
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 6 cut(s) 14, 49, 94, 278, 384, 488
Lsp1109I GCAGC 1 cut(s) 486
MaeI CTAG 1 cut(s) 5
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 3 cut(s) 55, 67, 134
MalI GATC 4 cut(s) 101, 193, 206, 263
MboI GATC 4 cut(s) 99, 191, 204, 261
MboII GAAGA 1 cut(s) 175
MflI RGATCY 1 cut(s) 261
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 1 cut(s) 9
MnlI CCTC 5 cut(s) 191, 233, 260, 361, 397
MseI TTAA 2 cut(s) 348, 444
MslI CAYNNNNRTG 1 cut(s) 492
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 37
NciI CCSGG 1 cut(s) 37
NdeII GATC 4 cut(s) 99, 191, 204, 261
NlaIII CATG 1 cut(s) 169
NlaIV GGNNCC 1 cut(s) 263
NmuCI GTSAC 2 cut(s) 55, 134
PkrI GCNGC 1 cut(s) 501
PspN4I GGNNCC 1 cut(s) 263
PspPI GGNCC 1 cut(s) 484
PstI CTGCAG 1 cut(s) 504
PsuI RGATCY 1 cut(s) 261
RsaI GTAC 3 cut(s) 269, 417, 509
RsaNI GTAC 3 cut(s) 268, 416, 508
RseI CAYNNNNRTG 1 cut(s) 492
SaqAI TTAA 2 cut(s) 348, 444
SatI GCNGC 1 cut(s) 500
Sau3AI GATC 4 cut(s) 99, 191, 204, 261
Sau96I GGNCC 1 cut(s) 484
ScaI AGTACT 1 cut(s) 509
ScrFI CCNGG 1 cut(s) 37
SduI GDGCHC 1 cut(s) 313
SetI ASST 5 cut(s) 69, 83, 235, 345, 501
SfcI CTRYAG 1 cut(s) 500
SinI GGWCC 1 cut(s) 484
SmiMI CAYNNNNRTG 1 cut(s) 492
Sse9I AATT 1 cut(s) 9
SspI AATATT 1 cut(s) 379
SspMI CTAG 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 35
StyI CCWWGG 1 cut(s) 480
TaiI ACGT 1 cut(s) 69
TasI AATT 1 cut(s) 9
TatI WGTACW 3 cut(s) 267, 415, 507
Tru1I TTAA 2 cut(s) 348, 444
Tru9I TTAA 2 cut(s) 348, 444
TseFI GTSAC 2 cut(s) 55, 134
TseI GCWGC 1 cut(s) 499
Tsp45I GTSAC 2 cut(s) 55, 134
TspDTI ATGAA 2 cut(s) 154, 489
TspGWI ACGGA 1 cut(s) 454
VpaK11BI GGWCC 1 cut(s) 484
XapI RAATTY 1 cut(s) 9
XcmI CCANNNNNNNNNTGG 1 cut(s) 151
XspI CTAG 1 cut(s) 5
ZrmI AGTACT 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.