Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016890.1

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Forward (+)

3859 .. 4446

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016890.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atggatcagagttcacttctcaacagttctacaggggcattacacggttgcgttgtttctctcatcaccatcttgggcttttgcctcccactcaagtttgcaaatgcatgtccatttgagaccaactacggcagtatgctgatgactctctttattgtggactcagtcatttactttgggagcttagctttcatgataatccaagttgcccgcaacaatgcagatatcggagagttcatgaacaagattagcctcttgtttggaattcttgcctttgttttagagttgctcatccttgttaaaccttttggatgggtcgtgctcttcatctggagcatctgttttctgagcgttgtgactaactcgtaccaattgttgaaaacactctatggaagtgcaattgcaggtcttcatcatctttccagcgaattgaaagagaaattgattgaactgaatggccgcttgattgaaagcaatgcatttctagcacttgctcgtgtctttgagaaattgaaggagctgatcggttgctcgaaagagcacgaagcccaagaccagaaccagaccatcaatcacctacctgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

195

Amino Acids

21.62

Weight (kDa)

5.92

Isoelectric Point (pI)

25.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	395
AciI	CCGC	2 cut(s)	211, 460
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	457
AcsI	RAATTY	1 cut(s)	264
AfaI	GTAC	1 cut(s)	368
AgsI	TTSAA	5 cut(s)	379, 433, 449, 470, 514
AluBI	AGCT	3 cut(s)	183, 188, 520
AluI	AGCT	3 cut(s)	183, 188, 520
Alw21I	GWGCWC	2 cut(s)	324, 543
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	457
ApoI	RAATTY	1 cut(s)	264
AsuHPI	GGTGA	2 cut(s)	58, 566
BauI	CACGAG	1 cut(s)	495
BbsI	GAAGAC	1 cut(s)	401
Bbv12I	GWGCWC	2 cut(s)	324, 543
BccI	CCATC	3 cut(s)	77, 306, 575
BceAI	ACGGC	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	485
BfmI	CTRYAG	1 cut(s)	30
BfuAI	ACCTGC	1 cut(s)	395
BisI	GCNGC	1 cut(s)	460
BlpI	GCTNAGC	1 cut(s)	184
BlsI	GCNGC	1 cut(s)	461
BmsI	GCATC	1 cut(s)	345
BpiI	GAAGAC	1 cut(s)	401
BpmI	CTGGAG	1 cut(s)	352
Bpu1102I	GCTNAGC	1 cut(s)	184
BpuEI	CTTGAG	1 cut(s)	77
BsaI	GGTCTC	1 cut(s)	113
BsaXI	ACNNNNNCTCC	2 cut(s)	325, 355
Bse3DI	GCAATG	1 cut(s)	481
BseGI	GGATG	2 cut(s)	291, 317
BseMI	GCAATG	1 cut(s)	481
BseMII	CTCAG	2 cut(s)	177, 338
BshFI	GGCC	1 cut(s)	459
BsiHKAI	GWGCWC	2 cut(s)	324, 543
BsmAI	GTCTC	1 cut(s)	113
BsnI	GGCC	1 cut(s)	459
Bso31I	GGTCTC	1 cut(s)	113
Bsp1286I	GDGCHC	2 cut(s)	324, 543
Bsp143I	GATC	2 cut(s)	4, 522
Bsp1720I	GCTNAGC	1 cut(s)	184
BspACI	CCGC	2 cut(s)	211, 460
BspANI	GGCC	1 cut(s)	459
BspCNI	CTCAG	2 cut(s)	176, 339
BspHI	TCATGA	2 cut(s)	192, 237
BspMI	ACCTGC	1 cut(s)	395
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	329
BspTNI	GGTCTC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	481
BssMI	GATC	2 cut(s)	4, 522
BssSI	CACGAG	1 cut(s)	495
Bst2BI	CACGAG	1 cut(s)	495
Bst4CI	ACNGT	2 cut(s)	26, 47
Bst6I	CTCTTC	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	3 cut(s)	163, 184, 347
BstF5I	GGATG	2 cut(s)	291, 317
BstKTI	GATC	2 cut(s)	7, 525
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	2 cut(s)	4, 522
BstMWI	GCNNNNNNNGC	1 cut(s)	485
BstNSI	RCATGY	1 cut(s)	111
BstSFI	CTRYAG	1 cut(s)	30
BstV2I	GAAGAC	1 cut(s)	401
BsuRI	GGCC	1 cut(s)	459
BtsCI	GGATG	2 cut(s)	291, 317
BveI	ACCTGC	1 cut(s)	395
Cac8I	GCNNGC	1 cut(s)	211
CciI	TCATGA	2 cut(s)	192, 237
Csp6I	GTAC	1 cut(s)	367
CviAII	CATG	3 cut(s)	108, 193, 238
CviJI	RGCY	7 cut(s)	78, 183, 188, 252, 459, 520, 548
CviKI_1	RGCY	7 cut(s)	78, 183, 188, 252, 459, 520, 548
CviQI	GTAC	1 cut(s)	367
DdeI	CTNAG	3 cut(s)	163, 184, 347
DpnI	GATC	2 cut(s)	6, 524
DpnII	GATC	2 cut(s)	4, 522
EaeI	YGGCCR	1 cut(s)	457
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
Eco31I	GGTCTC	1 cut(s)	113
Eco32I	GATATC	1 cut(s)	226
EcoRI	GAATTC	1 cut(s)	264
EcoRV	GATATC	1 cut(s)	226
EcoT22I	ATGCAT	2 cut(s)	109, 481
FaeI	CATG	3 cut(s)	111, 196, 241
FaiI	YATR	5 cut(s)	109, 137, 194, 239, 390
FatI	CATG	3 cut(s)	107, 192, 237
FauI	CCCGC	1 cut(s)	218
Fnu4HI	GCNGC	1 cut(s)	460
FokI	GGATG	2 cut(s)	278, 324
Fsp4HI	GCNGC	1 cut(s)	460
FspBI	CTAG	1 cut(s)	485
GluI	GCNGC	1 cut(s)	460
GsuI	CTGGAG	1 cut(s)	352
HaeIII	GGCC	1 cut(s)	459
Hin1II	CATG	3 cut(s)	111, 196, 241
HinfI	GANTC	2 cut(s)	145, 161
HphI	GGTGA	2 cut(s)	58, 566
Hpy166II	GTNNAC	2 cut(s)	14, 160
Hpy188I	TCNGA	3 cut(s)	9, 230, 348
Hpy188III	TCNNGA	3 cut(s)	193, 238, 331
Hpy8I	GTNNAC	2 cut(s)	14, 160
HpyAV	CCTTC	1 cut(s)	508
HpyCH4III	ACNGT	2 cut(s)	26, 47
HpyCH4V	TGCA	6 cut(s)	101, 107, 221, 398, 404, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	485
HpyF3I	CTNAG	3 cut(s)	163, 184, 347
Hsp92II	CATG	3 cut(s)	111, 196, 241
Kzo9I	GATC	2 cut(s)	4, 522
LguI	GCTCTTC	1 cut(s)	329
LmnI	GCTCC	3 cut(s)	180, 333, 517
LpnPI	CCDG	6 cut(s)	18, 316, 390, 436, 569, 575
LweI	GCATC	1 cut(s)	345
MaeI	CTAG	1 cut(s)	485
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	2 cut(s)	6, 524
MboI	GATC	2 cut(s)	4, 522
MboII	GAAGA	2 cut(s)	316, 401
MfeI	CAATTG	2 cut(s)	371, 399
MhlI	GDGCHC	2 cut(s)	324, 543
MluCI	AATT	6 cut(s)	264, 371, 399, 428, 440, 509
MlyI	GAGTC	2 cut(s)	139, 155
MnlI	CCTC	2 cut(s)	95, 263
Mph1103I	ATGCAT	2 cut(s)	109, 481
MseI	TTAA	2 cut(s)	300, 586
MunI	CAATTG	2 cut(s)	371, 399
MwoI	GCNNNNNNNGC	1 cut(s)	485
NdeII	GATC	2 cut(s)	4, 522
NlaIII	CATG	3 cut(s)	111, 196, 241
NmuCI	GTSAC	1 cut(s)	355
NsiI	ATGCAT	2 cut(s)	109, 481
NspI	RCATGY	1 cut(s)	111
PagI	TCATGA	2 cut(s)	192, 237
PciSI	GCTCTTC	1 cut(s)	329
PflFI	GACNNNGTC	1 cut(s)	164
PkrI	GCNGC	1 cut(s)	461
PleI	GAGTC	2 cut(s)	139, 155
PpsI	GAGTC	2 cut(s)	139, 155
PsyI	GACNNNGTC	1 cut(s)	164
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
SapI	GCTCTTC	1 cut(s)	329
SaqAI	TTAA	2 cut(s)	300, 586
SatI	GCNGC	1 cut(s)	460
Sau3AI	GATC	2 cut(s)	4, 522
SchI	GAGTC	2 cut(s)	139, 155
SduI	GDGCHC	2 cut(s)	324, 543
SetI	ASST	7 cut(s)	185, 190, 307, 409, 522, 579, 583
SfaNI	GCATC	1 cut(s)	345
SfcI	CTRYAG	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	6 cut(s)	264, 371, 399, 428, 440, 509
SsiI	CCGC	2 cut(s)	211, 460
SspMI	CTAG	1 cut(s)	485
TaaI	ACNGT	2 cut(s)	26, 47
TaqI	TCGA	1 cut(s)	533
TasI	AATT	6 cut(s)	264, 371, 399, 428, 440, 509
TauI	GCSGC	1 cut(s)	462
Tru1I	TTAA	2 cut(s)	300, 586
Tru9I	TTAA	2 cut(s)	300, 586
TseFI	GTSAC	1 cut(s)	355
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	5 cut(s)	181, 226, 254, 316, 401
Tth111I	GACNNNGTC	1 cut(s)	164
XapI	RAATTY	1 cut(s)	264
XceI	RCATGY	1 cut(s)	111
XspI	CTAG	1 cut(s)	485
Zsp2I	ATGCAT	2 cut(s)	109, 481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.