Rmu_sc0000820.1_g000021

mitochondrial saccharopine dehydrogenase-like oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000820.1
Physical Location & Seq
Forward (+)
80012 .. 80581
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000820.1_g000021.1.cds

Sequence Viewer

Length: 570 bp
atgatgatattgctggcattacacggattcatgttttctctcatcggagtcttaggcggccacctccaactcaagtttccagatgtgtctacaaatgcgaccgcctacggcactgtgatgatgggcctcttcattattgagacatgcctttacatcgtctccttagttgtgatgggaatcctagctgctggcaataatacagagttcgtcgatttgatgaacaatatttccctctttcttggaagtctgtccgtgattatagagttgctcgtccttttttcgactttcggatggattgcactcttcttctggagcatctgcctcttatgcttcgtgagtaagtattacaagtcgctgaaaaaactctaccaacgtgcagttgcacatcttgttcgagactttggagaattgaaacagaacctggttgatttgaatcgccgcttgatggacagtaatgcaattgcagcacttggtcctgcctatcagacattgaaggacctgatcatcaggaatgacgggcgcattacagggcatgaagcccagaaccacaccactgagctacctgtttaa

Protein Analysis

189

Amino Acids

21.07

Weight (kDa)

6.95

Isoelectric Point (pI)

26.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 89
AciI CCGC 3 cut(s) 57, 102, 439
AcoI YGGCCR 1 cut(s) 58
AfiI CCNNNNNNNGG 1 cut(s) 445
AgsI TTSAA 3 cut(s) 412, 433, 493
AjnI CCWGG 1 cut(s) 420
AjuI GAANNNNNNNTTGG 2 cut(s) 60, 92
AloI GAACNNNNNNTCC 2 cut(s) 212, 244
AluBI AGCT 2 cut(s) 185, 559
AluI AGCT 2 cut(s) 185, 559
Alw26I GTCTC 3 cut(s) 134, 163, 390
AlwNI CAGNNNCTG 1 cut(s) 421
AoxI GGCC 2 cut(s) 58, 124
ApeKI GCWGC 2 cut(s) 185, 464
AspLEI GCGC 1 cut(s) 522
AspS9I GGNCC 3 cut(s) 124, 473, 496
AvaII GGWCC 2 cut(s) 473, 496
BbvI GCAGC 2 cut(s) 172, 476
BccI CCATC 4 cut(s) 115, 166, 285, 439
BceAI ACGGC 1 cut(s) 124
BciT130I CCWGG 1 cut(s) 422
BclI TGATCA 1 cut(s) 501
BcoDI GTCTC 3 cut(s) 134, 163, 390
BfaI CTAG 1 cut(s) 182
BisI GCNGC 4 cut(s) 58, 186, 439, 465
BlsI GCNGC 4 cut(s) 59, 187, 440, 466
Bme1390I CCNGG 1 cut(s) 422
Bme18I GGWCC 2 cut(s) 473, 496
BmgT120I GGNCC 3 cut(s) 124, 473, 496
BmrFI CCNGG 1 cut(s) 422
BmsI GCATC 1 cut(s) 324
BpmI CTGGAG 1 cut(s) 331
BpuEI CTTGAG 1 cut(s) 56
BsaBI GATNNNNATC 2 cut(s) 176, 432
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 1 cut(s) 445
Bse8I GATNNNNATC 2 cut(s) 176, 432
BseBI CCWGG 1 cut(s) 422
BseGI GGATG 1 cut(s) 296
BseJI GATNNNNATC 2 cut(s) 176, 432
BseLI CCNNNNNNNGG 1 cut(s) 445
BseMII CTCAG 1 cut(s) 546
BseXI GCAGC 2 cut(s) 172, 476
BsgI GTGCAG 1 cut(s) 396
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 2 cut(s) 60, 126
BsiEI CGRYCG 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 445
BsmAI GTCTC 3 cut(s) 134, 163, 390
BsmBI CGTCTC 1 cut(s) 163
BsnI GGCC 2 cut(s) 60, 126
Bsp143I GATC 1 cut(s) 501
BspACI CCGC 3 cut(s) 57, 102, 439
BspANI GGCC 2 cut(s) 60, 126
BspCNI CTCAG 1 cut(s) 547
BssMI GATC 1 cut(s) 501
Bst2UI CCWGG 1 cut(s) 422
Bst4CI ACNGT 2 cut(s) 115, 452
Bst6I CTCTTC 2 cut(s) 134, 308
BstC8I GCNNGC 2 cut(s) 15, 190
BstDEI CTNAG 3 cut(s) 52, 163, 555
BstF5I GGATG 1 cut(s) 296
BstHHI GCGC 1 cut(s) 522
BstKTI GATC 1 cut(s) 504
BstMAI GTCTC 3 cut(s) 134, 163, 390
BstMBI GATC 1 cut(s) 501
BstMCI CGRYCG 1 cut(s) 102
BstMWI GCNNNNNNNGC 2 cut(s) 327, 464
BstNI CCWGG 1 cut(s) 422
BstNSI RCATGY 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 420
BstV1I GCAGC 2 cut(s) 172, 476
BsuRI GGCC 2 cut(s) 60, 126
BtsCI GGATG 1 cut(s) 296
BtsIMutI CAGTG 2 cut(s) 111, 552
Cac8I GCNNGC 2 cut(s) 15, 190
CaiI CAGNNNCTG 1 cut(s) 421
CfoI GCGC 1 cut(s) 522
Cfr13I GGNCC 3 cut(s) 124, 473, 496
CsiI ACCWGGT 1 cut(s) 420
CviAII CATG 3 cut(s) 31, 144, 533
CviJI RGCY 5 cut(s) 60, 126, 185, 539, 559
CviKI_1 RGCY 5 cut(s) 60, 126, 185, 539, 559
DdeI CTNAG 3 cut(s) 52, 163, 555
DpnI GATC 1 cut(s) 503
DpnII GATC 1 cut(s) 501
EaeI YGGCCR 1 cut(s) 58
Eam1104I CTCTTC 2 cut(s) 134, 308
EarI CTCTTC 2 cut(s) 134, 308
Eco47I GGWCC 2 cut(s) 473, 496
EcoO109I RGGNCCY 1 cut(s) 496
EcoRII CCWGG 1 cut(s) 420
Esp3I CGTCTC 1 cut(s) 163
FaeI CATG 3 cut(s) 34, 147, 536
FaiI YATR 5 cut(s) 32, 145, 260, 328, 534
FatI CATG 3 cut(s) 30, 143, 532
FbaI TGATCA 1 cut(s) 501
FblI GTMKAC 1 cut(s) 89
Fnu4HI GCNGC 4 cut(s) 58, 186, 439, 465
FokI GGATG 1 cut(s) 303
Fsp4HI GCNGC 4 cut(s) 58, 186, 439, 465
FspBI CTAG 1 cut(s) 182
GlaI GCGC 1 cut(s) 521
GluI GCNGC 4 cut(s) 58, 186, 439, 465
GsuI CTGGAG 1 cut(s) 331
HaeIII GGCC 2 cut(s) 60, 126
HhaI GCGC 1 cut(s) 522
Hin1II CATG 3 cut(s) 34, 147, 536
Hin6I GCGC 1 cut(s) 520
HinP1I GCGC 1 cut(s) 520
HinfI GANTC 4 cut(s) 27, 48, 177, 433
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 3 cut(s) 47, 290, 486
Hpy188III TCNNGA 5 cut(s) 80, 310, 334, 395, 508
Hpy8I GTNNAC 1 cut(s) 90
Hpy99I CGWCG 1 cut(s) 212
HpyAV CCTTC 1 cut(s) 487
HpyCH4III ACNGT 2 cut(s) 115, 452
HpyCH4IV ACGT 1 cut(s) 373
HpyCH4V TGCA 5 cut(s) 299, 377, 383, 458, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 327, 464
HpyF3I CTNAG 3 cut(s) 52, 163, 555
HpySE526I ACGT 1 cut(s) 373
Hsp92II CATG 3 cut(s) 34, 147, 536
HspAI GCGC 1 cut(s) 520
Ksp22I TGATCA 1 cut(s) 501
Kzo9I GATC 1 cut(s) 501
LmnI GCTCC 1 cut(s) 312
Lsp1109I GCAGC 2 cut(s) 172, 476
LweI GCATC 1 cut(s) 324
MabI ACCWGGT 1 cut(s) 420
MaeI CTAG 1 cut(s) 182
MaeII ACGT 1 cut(s) 373
MalI GATC 1 cut(s) 503
MboI GATC 1 cut(s) 501
MboII GAAGA 3 cut(s) 121, 295, 298
MfeI CAATTG 1 cut(s) 459
MluCI AATT 2 cut(s) 407, 459
MlyI GAGTC 1 cut(s) 57
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 4 cut(s) 74, 137, 242, 332
MseI TTAA 1 cut(s) 568
MslI CAYNNNNRTG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 422
MunI CAATTG 1 cut(s) 459
MvaI CCWGG 1 cut(s) 422
MwoI GCNNNNNNNGC 2 cut(s) 327, 464
NdeII GATC 1 cut(s) 501
NlaIII CATG 3 cut(s) 34, 147, 536
NspI RCATGY 1 cut(s) 147
PfeI GAWTC 3 cut(s) 27, 177, 433
PkrI GCNGC 4 cut(s) 59, 187, 440, 466
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
PpuMI RGGWCCY 1 cut(s) 496
Psp5II RGGWCCY 1 cut(s) 496
Psp6I CCWGG 1 cut(s) 420
PspGI CCWGG 1 cut(s) 420
PspPI GGNCC 3 cut(s) 124, 473, 496
PspPPI RGGWCCY 1 cut(s) 496
PstNI CAGNNNCTG 1 cut(s) 421
RseI CAYNNNNRTG 1 cut(s) 116
SaqAI TTAA 1 cut(s) 568
SatI GCNGC 4 cut(s) 58, 186, 439, 465
Sau3AI GATC 1 cut(s) 501
Sau96I GGNCC 3 cut(s) 124, 473, 496
SchI GAGTC 1 cut(s) 57
ScrFI CCNGG 1 cut(s) 422
SetI ASST 7 cut(s) 66, 187, 376, 423, 501, 561, 565
SexAI ACCWGGT 1 cut(s) 420
SfaNI GCATC 1 cut(s) 324
SinI GGWCC 2 cut(s) 473, 496
SmiMI CAYNNNNRTG 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 2 cut(s) 407, 459
SsiI CCGC 3 cut(s) 57, 102, 439
SspI AATATT 1 cut(s) 226
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 420
TaaI ACNGT 2 cut(s) 115, 452
TaiI ACGT 1 cut(s) 376
TaqI TCGA 3 cut(s) 210, 281, 394
TasI AATT 2 cut(s) 407, 459
TauI GCSGC 2 cut(s) 60, 441
TfiI GAWTC 3 cut(s) 27, 177, 433
Tru1I TTAA 1 cut(s) 568
Tru9I TTAA 1 cut(s) 568
TscAI CASTG 2 cut(s) 118, 559
TseI GCWGC 2 cut(s) 185, 464
TspDTI ATGAA 4 cut(s) 19, 121, 233, 549
TspGWI ACGGA 2 cut(s) 39, 241
TspRI CASTG 2 cut(s) 118, 559
VpaK11BI GGWCC 2 cut(s) 473, 496
XceI RCATGY 1 cut(s) 147
XmiI GTMKAC 1 cut(s) 89
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.