Rh2DG615400

mitochondrial saccharopine dehydrogenase-like oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
84656273 .. 84661344
5072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG615400.1

Sequence Viewer

Length: 378 bp
ATGGGGAGTAGTGCAGTTGCAGGACTCAGCCGTGCTTATGAGAAGTTGAAGGATCTTATCAAGAGGAGGCGCTATTCGACAGAGCATGAAACCAAGGAACAGAGCAAGGAGCTACCGGGCAAGGGACTGAGGGAGGAAGGTACTCCTCCGGCTCAGGTCAGTTCTATGGGGACATTTCACAAAGGGATCGTCTCTCTCATCACCATCTTAGCCCTGTTCTTCAAACAAGCACCGGTCGGAAATACATCTTCAACTGTCACCGACTACAGCTCTATACTCATCCCGATATTTGTTGTTGCCTTGGTGGTTCACTTTGGGTCATTGGCGAGTGCCAAGAAAATTCAAGCTGATCCCGATAAGGCAGATCTGGGTAAATAA

Protein Analysis

125

Amino Acids

13.46

Weight (kDa)

9.56

Isoelectric Point (pI)

37.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 60, 194, 344
AcsI RAATTY 1 cut(s) 339
AfaI GTAC 1 cut(s) 142
AfiI CCNNNNNNNGG 1 cut(s) 122
AgeI ACCGGT 1 cut(s) 232
AgsI TTSAA 4 cut(s) 49, 223, 252, 344
AluBI AGCT 3 cut(s) 112, 270, 347
AluI AGCT 3 cut(s) 112, 270, 347
Alw26I GTCTC 1 cut(s) 196
AlwI GGATC 3 cut(s) 60, 194, 344
ApoI RAATTY 1 cut(s) 339
ArsI GACNNNNNNTTYG 2 cut(s) 174, 206
AsiGI ACCGGT 1 cut(s) 232
AspLEI GCGC 1 cut(s) 72
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 2 cut(s) 193, 250
BccI CCATC 1 cut(s) 212
BceAI ACGGC 1 cut(s) 15
BcnI CCSGG 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 196
BfmI CTRYAG 1 cut(s) 265
BfoI RGCGCY 1 cut(s) 73
BglII AGATCT 1 cut(s) 364
Bme1390I CCNGG 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 117
Bpu10I CCTNAGC 1 cut(s) 153
BpuMI CCSGG 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 93, 300
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse118I RCCGGY 1 cut(s) 232
BseDI CCNNGG 2 cut(s) 93, 300
BseGI GGATG 1 cut(s) 279
BseLI CCNNNNNNNGG 1 cut(s) 122
BseMII CTCAG 3 cut(s) 40, 119, 167
BseRI GAGGAG 2 cut(s) 79, 135
BsgI GTGCAG 1 cut(s) 33
Bsh1285I CGRYCG 1 cut(s) 237
BshTI ACCGGT 1 cut(s) 232
BsiEI CGRYCG 1 cut(s) 237
BsiSI CCGG 3 cut(s) 116, 149, 233
BslFI GGGAC 2 cut(s) 138, 184
BslI CCNNNNNNNGG 1 cut(s) 122
BsmAI GTCTC 1 cut(s) 196
BsmBI CGTCTC 1 cut(s) 196
BsmFI GGGAC 2 cut(s) 138, 184
Bsp143I GATC 4 cut(s) 52, 186, 349, 364
BspCNI CTCAG 3 cut(s) 39, 120, 166
BspPI GGATC 3 cut(s) 60, 194, 344
BsrFI RCCGGY 1 cut(s) 232
BssAI RCCGGY 1 cut(s) 232
BssECI CCNNGG 2 cut(s) 93, 300
BssMI GATC 4 cut(s) 52, 186, 349, 364
BssT1I CCWWGG 2 cut(s) 93, 300
Bst4CI ACNGT 1 cut(s) 256
BstDEI CTNAG 4 cut(s) 26, 128, 153, 208
BstF5I GGATG 1 cut(s) 279
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 4 cut(s) 55, 189, 352, 367
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 4 cut(s) 52, 186, 349, 364
BstMCI CGRYCG 1 cut(s) 237
BstSCI CCNGG 1 cut(s) 115
BstSFI CTRYAG 1 cut(s) 265
BstX2I RGATCY 2 cut(s) 52, 364
BstYI RGATCY 2 cut(s) 52, 364
BtsCI GGATG 1 cut(s) 279
CfoI GCGC 1 cut(s) 72
Cfr10I RCCGGY 1 cut(s) 232
Csp6I GTAC 1 cut(s) 141
CspAI ACCGGT 1 cut(s) 232
CviAII CATG 1 cut(s) 86
CviJI RGCY 6 cut(s) 30, 112, 152, 212, 270, 347
CviKI_1 RGCY 6 cut(s) 30, 112, 152, 212, 270, 347
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 4 cut(s) 26, 128, 153, 208
DpnI GATC 4 cut(s) 54, 188, 351, 366
DpnII GATC 4 cut(s) 52, 186, 349, 364
Eco130I CCWWGG 2 cut(s) 93, 300
EcoT14I CCWWGG 2 cut(s) 93, 300
ErhI CCWWGG 2 cut(s) 93, 300
Esp3I CGTCTC 1 cut(s) 196
FaeI CATG 1 cut(s) 89
FaiI YATR 4 cut(s) 39, 87, 167, 275
FaqI GGGAC 2 cut(s) 138, 184
FatI CATG 1 cut(s) 85
FokI GGATG 1 cut(s) 266
GlaI GCGC 1 cut(s) 71
HaeII RGCGCY 1 cut(s) 73
HapII CCGG 3 cut(s) 116, 149, 233
HhaI GCGC 1 cut(s) 72
Hin1II CATG 1 cut(s) 89
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HinfI GANTC 1 cut(s) 24
HpaII CCGG 3 cut(s) 116, 149, 233
HphI GGTGA 2 cut(s) 193, 250
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 1 cut(s) 239
Hpy188III TCNNGA 3 cut(s) 61, 283, 353
Hpy8I GTNNAC 1 cut(s) 310
HpyAV CCTTC 2 cut(s) 43, 131
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4V TGCA 2 cut(s) 14, 20
HpyF3I CTNAG 4 cut(s) 26, 128, 153, 208
Hsp92II CATG 1 cut(s) 89
HspAI GCGC 1 cut(s) 70
Kzo9I GATC 4 cut(s) 52, 186, 349, 364
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 7 cut(s) 6, 129, 140, 162, 227, 246, 353
MaeIII GTNAC 1 cut(s) 256
MalI GATC 4 cut(s) 54, 188, 351, 366
MboI GATC 4 cut(s) 52, 186, 349, 364
MboII GAAGA 2 cut(s) 211, 240
MflI RGATCY 2 cut(s) 52, 364
MluCI AATT 1 cut(s) 339
MlyI GAGTC 1 cut(s) 18
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 5 cut(s) 57, 60, 123, 127, 156
MspI CCGG 3 cut(s) 116, 149, 233
MspR9I CCNGG 1 cut(s) 117
NciI CCSGG 1 cut(s) 117
NdeII GATC 4 cut(s) 52, 186, 349, 364
NlaIII CATG 1 cut(s) 89
NmuCI GTSAC 1 cut(s) 256
PinAI ACCGGT 1 cut(s) 232
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
PsuI RGATCY 2 cut(s) 52, 364
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
Sau3AI GATC 4 cut(s) 52, 186, 349, 364
SchI GAGTC 1 cut(s) 18
ScrFI CCNGG 1 cut(s) 117
SetI ASST 5 cut(s) 114, 142, 159, 272, 349
SfcI CTRYAG 1 cut(s) 265
Sse9I AATT 1 cut(s) 339
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 2 cut(s) 93, 300
TaaI ACNGT 1 cut(s) 256
TaqI TCGA 1 cut(s) 77
TasI AATT 1 cut(s) 339
TseFI GTSAC 1 cut(s) 256
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 1 cut(s) 102
XapI RAATTY 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.