Prupe.3G260700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000247
Physical Location & Seq
Reverse (-)
24671158 .. 24672318
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G260700.1

Sequence Viewer

Length: 396 bp
ATGTTGTTCGCAGTTTTACAAAGGCAATACAGCACAAACATATTTTCTTTCTCATCACCTTACATAAGTTCGTTGGCGGCTGTTAATATACTCCAAGCTCACATTACTTCAGATTTGGGTGAATTCATGAATAAGATTAGCCTCTTATCTGGAATTCTTGCCTCCATCTTATTATTGCTTATCCTTGTTCTAGCCTTTGGGTGGTTTGCCCTCATCTTGTGGACCGCTTGTCTTGTGACAGTTGTGACCAAATCCTACCAATCTTTGAAAACATTATTGTATACAACTGTTGCAGATGCTAGCAGTGGTTCTTCGTGCCTATGGCAAGTTGAAGGAGCTCATGAATTGCCGCTTGACGGAAGAAGCCGCGGACCAGCAGAATGGGCTATACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.27

Weight (kDa)

6.02

Isoelectric Point (pI)

55.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 281
AccII CGCG 1 cut(s) 369
AciI CCGC 5 cut(s) 77, 225, 350, 367, 369
AcsI RAATTY 2 cut(s) 122, 153
AcuI CTGAAG 1 cut(s) 93
AfiI CCNNNNNNNGG 2 cut(s) 201, 356
AgsI TTSAA 2 cut(s) 268, 332
AhdI GACNNNNNGTC 1 cut(s) 228
AluBI AGCT 2 cut(s) 98, 338
AluI AGCT 2 cut(s) 98, 338
Alw21I GWGCWC 1 cut(s) 340
ApoI RAATTY 2 cut(s) 122, 153
AspS9I GGNCC 2 cut(s) 222, 371
AsuHPI GGTGA 2 cut(s) 48, 131
AsuNHI GCTAGC 1 cut(s) 299
AvaII GGWCC 2 cut(s) 222, 371
BanII GRGCYC 1 cut(s) 340
Bbv12I GWGCWC 1 cut(s) 340
BccI CCATC 1 cut(s) 173
BfaI CTAG 2 cut(s) 191, 300
BisI GCNGC 3 cut(s) 78, 350, 367
BlsI GCNGC 3 cut(s) 79, 351, 368
Bme18I GGWCC 2 cut(s) 222, 371
BmeRI GACNNNNNGTC 1 cut(s) 228
BmgT120I GGNCC 2 cut(s) 222, 371
BmsI GCATC 1 cut(s) 286
BmtI GCTAGC 1 cut(s) 303
BsaJI CCNNGG 1 cut(s) 367
Bsc4I CCNNNNNNNGG 2 cut(s) 201, 356
BseDI CCNNGG 1 cut(s) 367
BseLI CCNNNNNNNGG 2 cut(s) 201, 356
Bsh1236I CGCG 1 cut(s) 369
BsiHKAI GWGCWC 1 cut(s) 340
BslI CCNNNNNNNGG 2 cut(s) 201, 356
Bsp1286I GDGCHC 1 cut(s) 340
BspACI CCGC 5 cut(s) 77, 225, 350, 367, 369
BspFNI CGCG 1 cut(s) 369
BspHI TCATGA 2 cut(s) 126, 340
BspOI GCTAGC 1 cut(s) 303
BssECI CCNNGG 1 cut(s) 367
BssNAI GTATAC 1 cut(s) 282
Bst1107I GTATAC 1 cut(s) 282
Bst4CI ACNGT 2 cut(s) 241, 289
BstC8I GCNNGC 1 cut(s) 301
BstDSI CCRYGG 1 cut(s) 367
BstFNI CGCG 1 cut(s) 369
BstMWI GCNNNNNNNGC 1 cut(s) 383
BstUI CGCG 1 cut(s) 369
BstXI CCANNNNNNTGG 1 cut(s) 381
BstZ17I GTATAC 1 cut(s) 282
BtgI CCRYGG 1 cut(s) 367
BtsI GCAGTG 1 cut(s) 310
BtsIMutI CAGTG 1 cut(s) 310
Cac8I GCNNGC 1 cut(s) 301
CciI TCATGA 2 cut(s) 126, 340
Cfr13I GGNCC 2 cut(s) 222, 371
Cfr42I CCGCGG 1 cut(s) 370
CviAII CATG 2 cut(s) 127, 341
CviJI RGCY 7 cut(s) 80, 98, 141, 194, 338, 366, 386
CviKI_1 RGCY 7 cut(s) 80, 98, 141, 194, 338, 366, 386
DriI GACNNNNNGTC 1 cut(s) 228
Eam1105I GACNNNNNGTC 1 cut(s) 228
Ecl136II GAGCTC 1 cut(s) 338
Eco24I GRGCYC 1 cut(s) 340
Eco47I GGWCC 2 cut(s) 222, 371
Eco53kI GAGCTC 1 cut(s) 338
Eco57I CTGAAG 1 cut(s) 93
EcoICRI GAGCTC 1 cut(s) 338
EcoRI GAATTC 2 cut(s) 122, 153
EcoT38I GRGCYC 1 cut(s) 340
FaeI CATG 2 cut(s) 130, 344
FaiI YATR 8 cut(s) 41, 65, 89, 128, 282, 322, 342, 389
FatI CATG 2 cut(s) 126, 340
FblI GTMKAC 1 cut(s) 281
Fnu4HI GCNGC 3 cut(s) 78, 350, 367
FriOI GRGCYC 1 cut(s) 340
Fsp4HI GCNGC 3 cut(s) 78, 350, 367
FspBI CTAG 2 cut(s) 191, 300
GluI GCNGC 3 cut(s) 78, 350, 367
Hin1II CATG 2 cut(s) 130, 344
HphI GGTGA 2 cut(s) 48, 131
Hpy166II GTNNAC 2 cut(s) 222, 282
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 3 cut(s) 127, 150, 341
Hpy8I GTNNAC 2 cut(s) 222, 282
HpyAV CCTTC 1 cut(s) 326
HpyCH4III ACNGT 2 cut(s) 241, 289
HpyCH4V TGCA 1 cut(s) 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 383
Hsp92II CATG 2 cut(s) 130, 344
KspI CCGCGG 1 cut(s) 370
LmnI GCTCC 1 cut(s) 335
LpnPI CCDG 2 cut(s) 135, 387
LweI GCATC 1 cut(s) 286
MaeI CTAG 2 cut(s) 191, 300
MaeIII GTNAC 2 cut(s) 235, 244
MboII GAAGA 2 cut(s) 303, 372
MhlI GDGCHC 1 cut(s) 340
MluCI AATT 3 cut(s) 122, 153, 344
MnlI CCTC 3 cut(s) 152, 172, 221
MseI TTAA 1 cut(s) 84
MspA1I CMGCKG 1 cut(s) 369
MvnI CGCG 1 cut(s) 369
MwoI GCNNNNNNNGC 1 cut(s) 383
NheI GCTAGC 1 cut(s) 299
NlaIII CATG 2 cut(s) 130, 344
NmuCI GTSAC 2 cut(s) 235, 244
PagI TCATGA 2 cut(s) 126, 340
PkrI GCNGC 3 cut(s) 79, 351, 368
Psp124BI GAGCTC 1 cut(s) 340
PspPI GGNCC 2 cut(s) 222, 371
SacI GAGCTC 1 cut(s) 340
SacII CCGCGG 1 cut(s) 370
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 3 cut(s) 78, 350, 367
Sau96I GGNCC 2 cut(s) 222, 371
SduI GDGCHC 1 cut(s) 340
SetI ASST 3 cut(s) 61, 100, 340
SfaNI GCATC 1 cut(s) 286
Sfr303I CCGCGG 1 cut(s) 370
SgrBI CCGCGG 1 cut(s) 370
SinI GGWCC 2 cut(s) 222, 371
Sse9I AATT 3 cut(s) 122, 153, 344
SsiI CCGC 5 cut(s) 77, 225, 350, 367, 369
SspMI CTAG 2 cut(s) 191, 300
SstI GAGCTC 1 cut(s) 340
TaaI ACNGT 2 cut(s) 241, 289
TasI AATT 3 cut(s) 122, 153, 344
TauI GCSGC 3 cut(s) 80, 352, 369
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 2 cut(s) 235, 244
Tsp45I GTSAC 2 cut(s) 235, 244
TspDTI ATGAA 3 cut(s) 115, 143, 357
TspGWI ACGGA 1 cut(s) 372
TspRI CASTG 1 cut(s) 310
VpaK11BI GGWCC 2 cut(s) 222, 371
XapI RAATTY 2 cut(s) 122, 153
XmiI GTMKAC 1 cut(s) 281
XspI CTAG 2 cut(s) 191, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.