pycom09g04260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000247
Physical Location & Seq
Forward (+)
3115676 .. 3117250
1575 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g04260.1

Sequence Viewer

Length: 765 bp
ATGTACGCTCGGACCATTTTTTTGAATCAAAACCTAATCTGCCGCGTTCCTCCCTCCCTCCCCCAACACGGGGTATATATACCCATACCCTCTCCTCCAAATCCCATACCCTCTCCTCCTCCAAATCCTACAAACTCCTCCCTCCAAATCCTGCAAACTCCTCCCTCCTCTCTCTCACTCCTCCCTCCCTCCCCCAACTCTGCGGCTTTCCTCTTCGCCATGCCAAGAACCCACATCCCCGTTATGAACGTCGGAACTTCTCCACAAATCTCAGCTGGCAGCGCTATGGAGGAGGGTGGTCGGTACAAATCTCCACCGGCAGCACACAAACGTATATTCCTTCTCCTCAGCATCCTAGGAGTTCTCCTCCAGGTGAAGCATGCGACCGGAAATTTACCGTCTCCATTTGTCACATACCACAACACTGTTGTGATCTTGATTGCTGATTTACTCACTTACGCGGGGACATGGGAGACTGCCAACATTCTCCAAGCTTCCAACAATGCAAATATATATGAACTGATGAACAACATCAGCCTCTTGTGTGGAACTCTTGCGTTGGTGCTACTGGTGCTCCTCCTCGTTCCAGCTTTCGGGTGGTTTACTCTTGCATGTTGGGCCGTATATTTTGCGATAATTGGGACCAAGTCCTTCCAAATCCTAAGAGGACTCTGCACTGCAGCTGTGGGTTATGTCAGTGACAAAATGAAGGAGCTGATGAGGAGGTTGAAAGGTAGCGAAGAACCCCAGAACGAGGGAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

27.51

Weight (kDa)

9.12

Isoelectric Point (pI)

67.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 45, 461
AciI CCGC 3 cut(s) 43, 203, 461
AcsI RAATTY 1 cut(s) 391
AfaI GTAC 2 cut(s) 5, 305
AfeI AGCGCT 1 cut(s) 283
AfiI CCNNNNNNNGG 5 cut(s) 68, 69, 70, 593, 754
AgsI TTSAA 2 cut(s) 25, 730
AjnI CCWGG 1 cut(s) 369
AleI CACNNNNGTG 1 cut(s) 428
AluBI AGCT 5 cut(s) 275, 494, 590, 683, 715
AluI AGCT 5 cut(s) 275, 494, 590, 683, 715
Alw21I GWGCWC 1 cut(s) 576
Alw26I GTCTC 2 cut(s) 405, 467
Aor51HI AGCGCT 1 cut(s) 283
AoxI GGCC 1 cut(s) 618
ApeKI GCWGC 3 cut(s) 279, 320, 680
ApoI RAATTY 1 cut(s) 391
ArsI GACNNNNNNTTYG 1 cut(s) 36
AspA2I CCTAGG 1 cut(s) 355
AspLEI GCGC 1 cut(s) 284
AspS9I GGNCC 3 cut(s) 12, 618, 642
AsuHPI GGTGA 1 cut(s) 385
AvaII GGWCC 2 cut(s) 12, 642
AvrII CCTAGG 1 cut(s) 355
Bbv12I GWGCWC 1 cut(s) 576
BbvCI CCTCAGC 1 cut(s) 347
BbvI GCAGC 3 cut(s) 291, 332, 692
BceAI ACGGC 1 cut(s) 605
BciT130I CCWGG 1 cut(s) 371
BcoDI GTCTC 2 cut(s) 405, 467
BfaI CTAG 1 cut(s) 356
BfmI CTRYAG 1 cut(s) 678
BfoI RGCGCY 1 cut(s) 285
BisI GCNGC 5 cut(s) 43, 204, 280, 321, 681
BlnI CCTAGG 1 cut(s) 355
BlsI GCNGC 5 cut(s) 44, 205, 281, 322, 682
Bme1390I CCNGG 1 cut(s) 371
Bme18I GGWCC 2 cut(s) 12, 642
BmgT120I GGNCC 3 cut(s) 12, 618, 642
BmiI GGNNCC 1 cut(s) 643
BmrFI CCNGG 1 cut(s) 371
BmsI GCATC 1 cut(s) 360
BplI GAGNNNNNCTC 2 cut(s) 351, 383
BpmI CTGGAG 1 cut(s) 353
Bpu10I CCTNAGC 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 355
BsaWI WCCGGW 1 cut(s) 386
BsaXI ACNNNNNCTCC 2 cut(s) 558, 588
Bsc4I CCNNNNNNNGG 5 cut(s) 68, 69, 70, 593, 754
Bse118I RCCGGY 1 cut(s) 316
Bse1I ACTGG 1 cut(s) 573
BseBI CCWGG 1 cut(s) 371
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 2 cut(s) 234, 351
BseLI CCNNNNNNNGG 5 cut(s) 68, 69, 70, 593, 754
BseMII CTCAG 2 cut(s) 285, 361
BseNI ACTGG 1 cut(s) 573
BseXI GCAGC 3 cut(s) 291, 332, 692
BsgI GTGCAG 1 cut(s) 658
Bsh1236I CGCG 2 cut(s) 45, 461
Bsh1285I CGRYCG 1 cut(s) 387
BshFI GGCC 1 cut(s) 620
BsiEI CGRYCG 1 cut(s) 387
BsiHKAI GWGCWC 1 cut(s) 576
BsiSI CCGG 2 cut(s) 317, 387
BslFI GGGAC 2 cut(s) 478, 655
BslI CCNNNNNNNGG 5 cut(s) 68, 69, 70, 593, 754
BsmAI GTCTC 2 cut(s) 405, 467
BsmBI CGTCTC 1 cut(s) 405
BsmFI GGGAC 2 cut(s) 478, 655
BsnI GGCC 1 cut(s) 620
Bsp1286I GDGCHC 1 cut(s) 576
Bsp143I GATC 1 cut(s) 432
BspACI CCGC 3 cut(s) 43, 203, 461
BspANI GGCC 1 cut(s) 620
BspCNI CTCAG 2 cut(s) 284, 360
BspFNI CGCG 2 cut(s) 45, 461
BspLI GGNNCC 1 cut(s) 643
BspMAI CTGCAG 1 cut(s) 682
BsrFI RCCGGY 1 cut(s) 316
BsrI ACTGG 1 cut(s) 573
BssAI RCCGGY 1 cut(s) 316
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 1 cut(s) 432
BssT1I CCWWGG 1 cut(s) 355
Bst2UI CCWGG 1 cut(s) 371
Bst4CI ACNGT 2 cut(s) 399, 427
Bst6I CTCTTC 1 cut(s) 218
BstC8I GCNNGC 2 cut(s) 277, 381
BstDEI CTNAG 3 cut(s) 271, 347, 662
BstF5I GGATG 2 cut(s) 234, 351
BstFNI CGCG 2 cut(s) 45, 461
BstH2I RGCGCY 1 cut(s) 285
BstHHI GCGC 1 cut(s) 284
BstKTI GATC 1 cut(s) 435
BstMAI GTCTC 2 cut(s) 405, 467
BstMBI GATC 1 cut(s) 432
BstMCI CGRYCG 1 cut(s) 387
BstMWI GCNNNNNNNGC 3 cut(s) 281, 571, 617
BstNI CCWGG 1 cut(s) 371
BstNSI RCATGY 2 cut(s) 383, 615
BstSCI CCNGG 1 cut(s) 369
BstSFI CTRYAG 1 cut(s) 678
BstUI CGCG 2 cut(s) 45, 461
BstV1I GCAGC 3 cut(s) 291, 332, 692
BsuRI GGCC 1 cut(s) 620
BtsCI GGATG 2 cut(s) 234, 351
BtsI GCAGTG 1 cut(s) 675
BtsIMutI CAGTG 3 cut(s) 423, 675, 703
Cac8I GCNNGC 2 cut(s) 277, 381
CfoI GCGC 1 cut(s) 284
Cfr10I RCCGGY 1 cut(s) 316
Cfr13I GGNCC 3 cut(s) 12, 618, 642
Csp6I GTAC 2 cut(s) 4, 304
CviAII CATG 4 cut(s) 220, 380, 468, 612
CviJI RGCY 8 cut(s) 206, 275, 494, 537, 590, 620, 683, 715
CviKI_1 RGCY 8 cut(s) 206, 275, 494, 537, 590, 620, 683, 715
CviQI GTAC 2 cut(s) 4, 304
DdeI CTNAG 3 cut(s) 271, 347, 662
DpnI GATC 1 cut(s) 434
DpnII GATC 1 cut(s) 432
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Eco130I CCWWGG 1 cut(s) 355
Eco47I GGWCC 2 cut(s) 12, 642
Eco47III AGCGCT 1 cut(s) 283
EcoRII CCWGG 1 cut(s) 369
EcoT14I CCWWGG 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 355
Esp3I CGTCTC 1 cut(s) 405
FaeI CATG 4 cut(s) 223, 383, 471, 615
FaqI GGGAC 2 cut(s) 478, 655
FatI CATG 4 cut(s) 219, 379, 467, 611
FauI CCCGC 1 cut(s) 454
Fnu4HI GCNGC 5 cut(s) 43, 204, 280, 321, 681
FokI GGATG 2 cut(s) 221, 338
Fsp4HI GCNGC 5 cut(s) 43, 204, 280, 321, 681
FspBI CTAG 1 cut(s) 356
GlaI GCGC 1 cut(s) 283
GluI GCNGC 5 cut(s) 43, 204, 280, 321, 681
GsuI CTGGAG 1 cut(s) 353
HaeII RGCGCY 1 cut(s) 285
HaeIII GGCC 1 cut(s) 620
HapII CCGG 2 cut(s) 317, 387
HhaI GCGC 1 cut(s) 284
Hin1II CATG 4 cut(s) 223, 383, 471, 615
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HindIII AAGCTT 1 cut(s) 492
HinfI GANTC 2 cut(s) 25, 669
HpaII CCGG 2 cut(s) 317, 387
HphI GGTGA 1 cut(s) 385
Hpy166II GTNNAC 1 cut(s) 603
Hpy188I TCNGA 2 cut(s) 12, 254
Hpy188III TCNNGA 1 cut(s) 436
Hpy8I GTNNAC 1 cut(s) 603
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 3 cut(s) 350, 661, 703
HpyCH4III ACNGT 2 cut(s) 399, 427
HpyCH4IV ACGT 2 cut(s) 249, 331
HpyCH4V TGCA 5 cut(s) 154, 506, 611, 675, 680
HpyF10VI GCNNNNNNNGC 3 cut(s) 281, 571, 617
HpyF3I CTNAG 3 cut(s) 271, 347, 662
HpySE526I ACGT 2 cut(s) 249, 331
Hsp92II CATG 4 cut(s) 223, 383, 471, 615
HspAI GCGC 1 cut(s) 282
Kzo9I GATC 1 cut(s) 432
LmnI GCTCC 2 cut(s) 579, 712
LpnPI CCDG 9 cut(s) 164, 261, 330, 356, 383, 400, 554, 600, 761
Lsp1109I GCAGC 3 cut(s) 291, 332, 692
LweI GCATC 1 cut(s) 360
MaeI CTAG 1 cut(s) 356
MaeII ACGT 2 cut(s) 249, 331
MaeIII GTNAC 2 cut(s) 409, 698
MalI GATC 1 cut(s) 434
MboI GATC 1 cut(s) 432
MboII GAAGA 2 cut(s) 205, 752
MhlI GDGCHC 1 cut(s) 576
MluCI AATT 2 cut(s) 391, 636
MlyI GAGTC 1 cut(s) 663
MmeI TCCRAC 2 cut(s) 232, 522
MseI TTAA 1 cut(s) 763
MslI CAYNNNNRTG 1 cut(s) 428
MspA1I CMGCKG 2 cut(s) 275, 683
MspI CCGG 2 cut(s) 317, 387
MspR9I CCNGG 1 cut(s) 371
MvaI CCWGG 1 cut(s) 371
MvnI CGCG 2 cut(s) 45, 461
MwoI GCNNNNNNNGC 3 cut(s) 281, 571, 617
NdeII GATC 1 cut(s) 432
NlaIII CATG 4 cut(s) 223, 383, 471, 615
NlaIV GGNNCC 1 cut(s) 643
NmuCI GTSAC 2 cut(s) 409, 698
NspI RCATGY 2 cut(s) 383, 615
OliI CACNNNNGTG 1 cut(s) 428
PaeI GCATGC 1 cut(s) 383
PfeI GAWTC 1 cut(s) 25
PflFI GACNNNGTC 1 cut(s) 646
PkrI GCNGC 5 cut(s) 44, 205, 281, 322, 682
PleI GAGTC 1 cut(s) 663
PpsI GAGTC 1 cut(s) 663
Psp6I CCWGG 1 cut(s) 369
PspGI CCWGG 1 cut(s) 369
PspN4I GGNNCC 1 cut(s) 643
PspPI GGNCC 3 cut(s) 12, 618, 642
PstI CTGCAG 1 cut(s) 682
PsyI GACNNNGTC 1 cut(s) 646
PvuII CAGCTG 2 cut(s) 275, 683
RsaI GTAC 2 cut(s) 5, 305
RsaNI GTAC 2 cut(s) 4, 304
RseI CAYNNNNRTG 1 cut(s) 428
SaqAI TTAA 1 cut(s) 763
SatI GCNGC 5 cut(s) 43, 204, 280, 321, 681
Sau3AI GATC 1 cut(s) 432
Sau96I GGNCC 3 cut(s) 12, 618, 642
SchI GAGTC 1 cut(s) 663
ScrFI CCNGG 1 cut(s) 371
SduI GDGCHC 1 cut(s) 576
SfaNI GCATC 1 cut(s) 360
SfcI CTRYAG 1 cut(s) 678
SinI GGWCC 2 cut(s) 12, 642
SmiMI CAYNNNNRTG 1 cut(s) 428
SphI GCATGC 1 cut(s) 383
Sse9I AATT 2 cut(s) 391, 636
SsiI CCGC 3 cut(s) 43, 203, 461
SspMI CTAG 1 cut(s) 356
StyD4I CCNGG 1 cut(s) 369
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 2 cut(s) 399, 427
TaiI ACGT 2 cut(s) 252, 334
TasI AATT 2 cut(s) 391, 636
TauI GCSGC 2 cut(s) 45, 206
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 1 cut(s) 763
Tru9I TTAA 1 cut(s) 763
TscAI CASTG 3 cut(s) 430, 682, 703
TseFI GTSAC 2 cut(s) 409, 698
TseI GCWGC 3 cut(s) 279, 320, 680
Tsp45I GTSAC 2 cut(s) 409, 698
TspDTI ATGAA 4 cut(s) 260, 531, 539, 722
TspRI CASTG 3 cut(s) 430, 682, 703
Tth111I GACNNNGTC 1 cut(s) 646
VpaK11BI GGWCC 2 cut(s) 12, 642
XapI RAATTY 1 cut(s) 391
XceI RCATGY 2 cut(s) 383, 615
XcmI CCANNNNNNNNNTGG 1 cut(s) 594
XmaJI CCTAGG 1 cut(s) 355
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.