Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Reverse (-)

24657565 .. 24658597

Gene Structure 1033 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G260500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGCATGCGCACTTGTGTTTAAAAGATTTCCTCATTTCGCACCTTAAACTGATATGTAGTTTACTTTACCATATAATCAGTATGCATATATCCAATTGCATTCAACTATCTCGTTGTAACAGCAAAAAGGACGGAGAGGAGCGCAATCATCACTGTGATCAGAGTTCTACAAAGGCATTGCACAAATGTATCTCCTCTCTCATCACCATGCTAGCTGTGCTTCTCCCACTCAAGCATAGAACCGCAACTCTCGTGGCGTTTGTTGTTGCTTTAATGGTTTACTTTAGCTCTTTGGCTGTCAAGATACTACTCCAAGCACGCGACCACAACCCGGATTTGGCTGAGTTCATGGATAAGATTAGCCTCTCCTCTGGAACCCTCGCCTTGAATTTAGAATTGCTGGTCATTGTTCCAGCTTTTGGGTGCTTCGCCATCGTCGTCTGGAGCCTTTGCTTAGTGATTGCTGTAATCAAGTCGTACCATGAAAGTGCAGTCGTTTTGAAAAGATTGTATCGGTGTGCAGTTGAAGAACTTGTTCATGCCTTCGACAAGTTGAAAGAGCTCTTCCACTTGACCCGCCGGGAGGCCGAGCAGCAGAGTGGGCTTCCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

205

Amino Acids

22.93

Weight (kDa)

8.57

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	9
AccB7I	CCANNNNNTGG	1 cut(s)	419
AccII	CGCG	1 cut(s)	321
AciI	CCGC	2 cut(s)	243, 577
AcsI	RAATTY	1 cut(s)	388
AfaI	GTAC	1 cut(s)	479
AfiI	CCNNNNNNNGG	4 cut(s)	331, 337, 419, 583
AgsI	TTSAA	5 cut(s)	104, 388, 502, 527, 556
AluBI	AGCT	5 cut(s)	215, 288, 416, 562, 612
AluI	AGCT	5 cut(s)	215, 288, 416, 562, 612
Alw21I	GWGCWC	1 cut(s)	564
AoxI	GGCC	1 cut(s)	585
ApeKI	GCWGC	1 cut(s)	592
ApoI	RAATTY	1 cut(s)	388
Asp700I	GAANNNNTTC	1 cut(s)	534
AspLEI	GCGC	2 cut(s)	10, 144
AsuC2I	CCSGG	2 cut(s)	332, 581
AsuHPI	GGTGA	1 cut(s)	196
AsuNHI	GCTAGC	1 cut(s)	211
BaeI	ACNNNNGTAYC	2 cut(s)	172, 205
BanII	GRGCYC	1 cut(s)	564
BauI	CACGAG	1 cut(s)	251
Bbv12I	GWGCWC	1 cut(s)	564
BbvI	GCAGC	1 cut(s)	604
BccI	CCATC	1 cut(s)	440
BclI	TGATCA	1 cut(s)	157
BcnI	CCSGG	2 cut(s)	332, 581
BfaI	CTAG	3 cut(s)	212, 609, 613
BisI	GCNGC	1 cut(s)	593
BlsI	GCNGC	1 cut(s)	594
Bme1390I	CCNGG	2 cut(s)	332, 581
BmiI	GGNNCC	2 cut(s)	376, 446
BmrFI	CCNGG	2 cut(s)	332, 581
BmtI	GCTAGC	1 cut(s)	215
BpmI	CTGGAG	1 cut(s)	463
BpuEI	CTTGAG	1 cut(s)	215
BpuMI	CCSGG	2 cut(s)	332, 581
Bsc4I	CCNNNNNNNGG	4 cut(s)	331, 337, 419, 583
Bse3DI	GCAATG	1 cut(s)	176
BseLI	CCNNNNNNNGG	4 cut(s)	331, 337, 419, 583
BseMI	GCAATG	1 cut(s)	176
BseMII	CTCAG	1 cut(s)	333
BseRI	GAGGAG	3 cut(s)	152, 184, 358
BseXI	GCAGC	1 cut(s)	604
BsgI	GTGCAG	2 cut(s)	510, 540
Bsh1236I	CGCG	1 cut(s)	321
BshFI	GGCC	1 cut(s)	587
BsiHKAI	GWGCWC	1 cut(s)	564
BsiSI	CCGG	2 cut(s)	332, 580
BslI	CCNNNNNNNGG	4 cut(s)	331, 337, 419, 583
BsmI	GAATGC	1 cut(s)	99
BsnI	GGCC	1 cut(s)	587
Bsp1286I	GDGCHC	1 cut(s)	564
Bsp143I	GATC	1 cut(s)	157
BspACI	CCGC	2 cut(s)	243, 577
BspANI	GGCC	1 cut(s)	587
BspCNI	CTCAG	1 cut(s)	334
BspFNI	CGCG	1 cut(s)	321
BspLI	GGNNCC	2 cut(s)	376, 446
BspOI	GCTAGC	1 cut(s)	215
BspQI	GCTCTTC	1 cut(s)	569
BsrDI	GCAATG	1 cut(s)	176
BssMI	GATC	1 cut(s)	157
BssSI	CACGAG	1 cut(s)	251
Bst2BI	CACGAG	1 cut(s)	251
Bst4CI	ACNGT	1 cut(s)	155
Bst6I	CTCTTC	1 cut(s)	569
BstC8I	GCNNGC	3 cut(s)	6, 213, 319
BstDEI	CTNAG	2 cut(s)	342, 454
BstFNI	CGCG	1 cut(s)	321
BstHHI	GCGC	2 cut(s)	10, 144
BstKTI	GATC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	2 cut(s)	217, 601
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	330, 579
BstUI	CGCG	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	604
BsuRI	GGCC	1 cut(s)	587
BtsIMutI	CAGTG	1 cut(s)	151
Cac8I	GCNNGC	3 cut(s)	6, 213, 319
CfoI	GCGC	2 cut(s)	10, 144
Csp6I	GTAC	1 cut(s)	478
CspCI	CAANNNNNGTGG	2 cut(s)	234, 269
CviAII	CATG	5 cut(s)	5, 208, 349, 482, 539
CviQI	GTAC	1 cut(s)	478
DdeI	CTNAG	2 cut(s)	342, 454
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
DraI	TTTAAA	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	569
EarI	CTCTTC	1 cut(s)	569
Ecl136II	GAGCTC	1 cut(s)	562
Eco24I	GRGCYC	1 cut(s)	564
Eco53kI	GAGCTC	1 cut(s)	562
EcoICRI	GAGCTC	1 cut(s)	562
EcoT22I	ATGCAT	2 cut(s)	6, 87
EcoT38I	GRGCYC	1 cut(s)	564
FaeI	CATG	5 cut(s)	8, 211, 352, 485, 542
FatI	CATG	5 cut(s)	4, 207, 348, 481, 538
FauI	CCCGC	1 cut(s)	584
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	1 cut(s)	593
FriOI	GRGCYC	1 cut(s)	564
Fsp4HI	GCNGC	1 cut(s)	593
FspAI	RTGCGCAY	1 cut(s)	9
FspBI	CTAG	3 cut(s)	212, 609, 613
FspI	TGCGCA	1 cut(s)	9
GlaI	GCGC	2 cut(s)	9, 143
GluI	GCNGC	1 cut(s)	593
GsuI	CTGGAG	1 cut(s)	463
HaeIII	GGCC	1 cut(s)	587
HapII	CCGG	2 cut(s)	332, 580
HhaI	GCGC	2 cut(s)	10, 144
Hin1II	CATG	5 cut(s)	8, 211, 352, 485, 542
Hin6I	GCGC	2 cut(s)	8, 142
HinP1I	GCGC	2 cut(s)	8, 142
HpaII	CCGG	2 cut(s)	332, 580
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	2 cut(s)	62, 280
Hpy188I	TCNGA	1 cut(s)	162
Hpy188III	TCNNGA	3 cut(s)	301, 372, 442
Hpy8I	GTNNAC	2 cut(s)	62, 280
Hpy99I	CGWCG	1 cut(s)	440
HpyAV	CCTTC	1 cut(s)	553
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4V	TGCA	6 cut(s)	4, 85, 99, 181, 491, 521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	217, 601
HpyF3I	CTNAG	2 cut(s)	342, 454
Hsp92II	CATG	5 cut(s)	8, 211, 352, 485, 542
HspAI	GCGC	2 cut(s)	8, 142
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	157
LguI	GCTCTTC	1 cut(s)	569
LmnI	GCTCC	2 cut(s)	139, 444
LpnPI	CCDG	6 cut(s)	345, 357, 386, 426, 427, 593
Lsp1109I	GCAGC	1 cut(s)	604
MaeI	CTAG	3 cut(s)	212, 609, 613
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	2 cut(s)	539, 556
MfeI	CAATTG	1 cut(s)	94
MhlI	GDGCHC	1 cut(s)	564
MluCI	AATT	3 cut(s)	94, 388, 395
MnlI	CCTC	7 cut(s)	41, 130, 205, 374, 379, 389, 577
Mph1103I	ATGCAT	2 cut(s)	6, 87
MroXI	GAANNNNTTC	1 cut(s)	534
MseI	TTAA	3 cut(s)	20, 45, 272
MslI	CAYNNNNRTG	3 cut(s)	153, 206, 486
MspI	CCGG	2 cut(s)	332, 580
MspR9I	CCNGG	2 cut(s)	332, 581
MunI	CAATTG	1 cut(s)	94
Mva1269I	GAATGC	1 cut(s)	99
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	2 cut(s)	217, 601
NciI	CCSGG	2 cut(s)	332, 581
NdeII	GATC	1 cut(s)	157
NheI	GCTAGC	1 cut(s)	211
NlaIII	CATG	5 cut(s)	8, 211, 352, 485, 542
NlaIV	GGNNCC	2 cut(s)	376, 446
NmeAIII	GCCGAG	1 cut(s)	613
NsbI	TGCGCA	1 cut(s)	9
NsiI	ATGCAT	2 cut(s)	6, 87
NspI	RCATGY	1 cut(s)	8
PaeI	GCATGC	1 cut(s)	8
PciSI	GCTCTTC	1 cut(s)	569
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PctI	GAATGC	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	534
PflMI	CCANNNNNTGG	1 cut(s)	419
PkrI	GCNGC	1 cut(s)	594
Psp124BI	GAGCTC	1 cut(s)	564
PspN4I	GGNNCC	2 cut(s)	376, 446
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
RseI	CAYNNNNRTG	3 cut(s)	153, 206, 486
SacI	GAGCTC	1 cut(s)	564
SapI	GCTCTTC	1 cut(s)	569
SaqAI	TTAA	3 cut(s)	20, 45, 272
SatI	GCNGC	1 cut(s)	593
Sau3AI	GATC	1 cut(s)	157
ScrFI	CCNGG	2 cut(s)	332, 581
SduI	GDGCHC	1 cut(s)	564
SetI	ASST	6 cut(s)	45, 217, 290, 418, 564, 614
SmiMI	CAYNNNNRTG	3 cut(s)	153, 206, 486
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	3 cut(s)	94, 388, 395
SsiI	CCGC	2 cut(s)	243, 577
SspMI	CTAG	3 cut(s)	212, 609, 613
SstI	GAGCTC	1 cut(s)	564
StyD4I	CCNGG	2 cut(s)	330, 579
TaaI	ACNGT	1 cut(s)	155
TaqI	TCGA	1 cut(s)	546
TasI	AATT	3 cut(s)	94, 388, 395
Tru1I	TTAA	3 cut(s)	20, 45, 272
Tru9I	TTAA	3 cut(s)	20, 45, 272
TscAI	CASTG	1 cut(s)	158
TseI	GCWGC	1 cut(s)	592
TspDTI	ATGAA	3 cut(s)	337, 498, 527
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	1 cut(s)	158
Van91I	CCANNNNNTGG	1 cut(s)	419
XapI	RAATTY	1 cut(s)	388
XceI	RCATGY	1 cut(s)	8
XmnI	GAANNNNTTC	1 cut(s)	534
XspI	CTAG	3 cut(s)	212, 609, 613
Zsp2I	ATGCAT	2 cut(s)	6, 87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.