RLG00000021655

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000247
Physical Location & Seq
Reverse (-)
77028401 .. 77029491
1091 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021655

Sequence Viewer

Length: 642 bp
ATGGGCAAGTCCCATGTGTTAGAAGAACATAGAAACATCAATGATCAATCAGATGTGCATAGACCTGCATTGGCATGTTACATCATGAAGTGCAGGGAGGAGGTTCAGAGTTCTCAAGGGGCGTTGCACCAATATAATTTTACTCTCCTCGCCATGCTAGGAATTCTCCTTCAAGTGAAGCAGGCAACCGGGAGTAAATCTCCATTTGTCACAGACCACGTTATAATGCTGACCTTTGTTGCTGTTTTCTTGATCTATATCTGGTCATTGGCAACTTACAAGTTATGTCACTTTCCCACCACAGATTTGGCCGATTTCATGGACAACCTTAGCCTCTTCTTTGGATCACTTGCTCCAATCTTACTATTGCTTGTCCTCGTTCAAGCTTTCGGGTTGTTCACCCTCGGTTTGTGGATCCTGTACTTTCTTAGAGACTTTCTAACTAAGAAATCATACAGAAGGGCACTTGTTTATGTCTTGAAAAAAGTGCAAGAGCTGTTTAAAGGCCAAGAACAAAATGAGGCAGAGAATATTGTAGGATTACAAGAAGCAGGAGAGGAGAGTGCTGTACAAATACAAGAAGCAGGAGAACGGAACGTTGATGAAAATAAAATGGAGGAGCTGCAGAATGGACTACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

24.23

Weight (kDa)

5.51

Isoelectric Point (pI)

48.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 224
Acc36I ACCTGC 1 cut(s) 73
AclI AACGTT 1 cut(s) 597
AclWI GGATC 3 cut(s) 352, 409, 422
AcoI YGGCCR 1 cut(s) 309
AcsI RAATTY 1 cut(s) 162
AfaI GTAC 2 cut(s) 422, 570
AgsI TTSAA 3 cut(s) 173, 383, 481
AluBI AGCT 3 cut(s) 386, 496, 622
AluI AGCT 3 cut(s) 386, 496, 622
Alw26I GTCTC 1 cut(s) 426
AlwI GGATC 3 cut(s) 352, 409, 422
AoxI GGCC 2 cut(s) 309, 505
ApeKI GCWGC 1 cut(s) 622
ApoI RAATTY 1 cut(s) 162
AsuC2I CCSGG 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 391
BaeGI GKGCMC 1 cut(s) 466
BamHI GGATCC 1 cut(s) 414
BbvI GCAGC 1 cut(s) 609
BclI TGATCA 1 cut(s) 43
BcnI CCSGG 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 426
BfaI CTAG 1 cut(s) 158
BfmI CTRYAG 1 cut(s) 623
BfuAI ACCTGC 1 cut(s) 73
BisI GCNGC 1 cut(s) 623
BlsI GCNGC 1 cut(s) 624
Bme1390I CCNGG 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 416
BmrFI CCNGG 1 cut(s) 190
BplI GAGNNNNNCTC 2 cut(s) 184, 216
Bpu10I CCTNAGC 1 cut(s) 329
BpuEI CTTGAG 1 cut(s) 99
BpuMI CCSGG 1 cut(s) 190
BsaBI GATNNNNATC 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 403
Bse8I GATNNNNATC 1 cut(s) 257
BseDI CCNNGG 1 cut(s) 403
BseJI GATNNNNATC 1 cut(s) 257
BseRI GAGGAG 4 cut(s) 113, 137, 572, 632
BseSI GKGCMC 1 cut(s) 466
BseXI GCAGC 1 cut(s) 609
BsgI GTGCAG 1 cut(s) 112
BshFI GGCC 2 cut(s) 311, 507
BsiSI CCGG 1 cut(s) 189
BsmAI GTCTC 1 cut(s) 426
BsnI GGCC 2 cut(s) 311, 507
Bsp1286I GDGCHC 1 cut(s) 466
Bsp1407I TGTACA 1 cut(s) 568
Bsp143I GATC 4 cut(s) 43, 252, 344, 414
BspANI GGCC 2 cut(s) 311, 507
BspHI TCATGA 1 cut(s) 84
BspLI GGNNCC 1 cut(s) 416
BspMAI CTGCAG 1 cut(s) 627
BspMI ACCTGC 1 cut(s) 73
BspPI GGATC 3 cut(s) 352, 409, 422
BsrGI TGTACA 1 cut(s) 568
BssECI CCNNGG 1 cut(s) 403
BssMI GATC 4 cut(s) 43, 252, 344, 414
Bst6I CTCTTC 1 cut(s) 341
BstAUI TGTACA 1 cut(s) 568
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 3 cut(s) 329, 428, 444
BstKTI GATC 4 cut(s) 46, 255, 347, 417
BstMAI GTCTC 1 cut(s) 426
BstMBI GATC 4 cut(s) 43, 252, 344, 414
BstNSI RCATGY 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 188
BstSFI CTRYAG 1 cut(s) 623
BstSLI GKGCMC 1 cut(s) 466
BstV1I GCAGC 1 cut(s) 609
BstX2I RGATCY 1 cut(s) 414
BstXI CCANNNNNNTGG 1 cut(s) 307
BstYI RGATCY 1 cut(s) 414
BsuRI GGCC 2 cut(s) 311, 507
BveI ACCTGC 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 183
CciI TCATGA 1 cut(s) 84
Csp6I GTAC 2 cut(s) 421, 569
CviAII CATG 5 cut(s) 14, 75, 85, 154, 319
CviJI RGCY 6 cut(s) 311, 333, 386, 496, 507, 622
CviKI_1 RGCY 6 cut(s) 311, 333, 386, 496, 507, 622
CviQI GTAC 2 cut(s) 421, 569
DdeI CTNAG 3 cut(s) 329, 428, 444
DpnI GATC 4 cut(s) 45, 254, 346, 416
DpnII GATC 4 cut(s) 43, 252, 344, 414
DraI TTTAAA 1 cut(s) 502
EaeI YGGCCR 1 cut(s) 309
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
EcoRI GAATTC 1 cut(s) 162
FaeI CATG 5 cut(s) 17, 78, 88, 157, 322
FatI CATG 5 cut(s) 13, 74, 84, 153, 318
FbaI TGATCA 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 623
Fsp4HI GCNGC 1 cut(s) 623
FspBI CTAG 1 cut(s) 158
GluI GCNGC 1 cut(s) 623
HaeIII GGCC 2 cut(s) 311, 507
HapII CCGG 1 cut(s) 189
Hin1II CATG 5 cut(s) 17, 78, 88, 157, 322
HindIII AAGCTT 1 cut(s) 384
HpaII CCGG 1 cut(s) 189
HphI GGTGA 1 cut(s) 391
Hpy166II GTNNAC 1 cut(s) 399
Hpy188I TCNGA 2 cut(s) 52, 108
Hpy188III TCNNGA 3 cut(s) 85, 250, 478
Hpy8I GTNNAC 1 cut(s) 399
HpyAV CCTTC 2 cut(s) 179, 453
HpyCH4IV ACGT 2 cut(s) 219, 597
HpyCH4V TGCA 6 cut(s) 58, 68, 93, 127, 490, 625
HpyF3I CTNAG 3 cut(s) 329, 428, 444
HpySE526I ACGT 2 cut(s) 219, 597
Hsp92II CATG 5 cut(s) 17, 78, 88, 157, 322
Ksp22I TGATCA 1 cut(s) 43
Kzo9I GATC 4 cut(s) 43, 252, 344, 414
LmnI GCTCC 2 cut(s) 358, 619
LpnPI CCDG 8 cut(s) 78, 79, 167, 202, 247, 431, 537, 570
Lsp1109I GCAGC 1 cut(s) 609
MaeI CTAG 1 cut(s) 158
MaeII ACGT 2 cut(s) 219, 597
MaeIII GTNAC 3 cut(s) 77, 208, 287
MalI GATC 4 cut(s) 45, 254, 346, 416
MboI GATC 4 cut(s) 43, 252, 344, 414
MboII GAAGA 2 cut(s) 35, 328
MflI RGATCY 1 cut(s) 414
MhlI GDGCHC 1 cut(s) 466
MluCI AATT 2 cut(s) 136, 162
MnlI CCTC 9 cut(s) 91, 94, 158, 344, 386, 413, 514, 550, 610
MseI TTAA 1 cut(s) 501
MslI CAYNNNNRTG 1 cut(s) 73
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 1 cut(s) 190
NciI CCSGG 1 cut(s) 190
NdeII GATC 4 cut(s) 43, 252, 344, 414
NlaIII CATG 5 cut(s) 17, 78, 88, 157, 322
NlaIV GGNNCC 1 cut(s) 416
NmuCI GTSAC 2 cut(s) 208, 287
NspI RCATGY 1 cut(s) 78
PagI TCATGA 1 cut(s) 84
PkrI GCNGC 1 cut(s) 624
PsiI TTATAA 1 cut(s) 224
Psp1406I AACGTT 1 cut(s) 597
PspN4I GGNNCC 1 cut(s) 416
PstI CTGCAG 1 cut(s) 627
PsuI RGATCY 1 cut(s) 414
RsaI GTAC 2 cut(s) 422, 570
RsaNI GTAC 2 cut(s) 421, 569
RseI CAYNNNNRTG 1 cut(s) 73
SaqAI TTAA 1 cut(s) 501
SatI GCNGC 1 cut(s) 623
Sau3AI GATC 4 cut(s) 43, 252, 344, 414
ScrFI CCNGG 1 cut(s) 190
SduI GDGCHC 1 cut(s) 466
SetI ASST 9 cut(s) 67, 105, 222, 236, 330, 388, 498, 600, 624
SfcI CTRYAG 1 cut(s) 623
SmiMI CAYNNNNRTG 1 cut(s) 73
SmlI CTYRAG 1 cut(s) 114
SmoI CTYRAG 1 cut(s) 114
Sse9I AATT 2 cut(s) 136, 162
SspI AATATT 1 cut(s) 532
SspMI CTAG 1 cut(s) 158
StyD4I CCNGG 1 cut(s) 188
TaiI ACGT 2 cut(s) 222, 600
TasI AATT 2 cut(s) 136, 162
TatI WGTACW 2 cut(s) 420, 568
Tru1I TTAA 1 cut(s) 501
Tru9I TTAA 1 cut(s) 501
TseFI GTSAC 2 cut(s) 208, 287
TseI GCWGC 1 cut(s) 622
Tsp45I GTSAC 2 cut(s) 208, 287
TspDTI ATGAA 3 cut(s) 101, 307, 618
TspGWI ACGGA 1 cut(s) 607
XapI RAATTY 1 cut(s) 162
XceI RCATGY 1 cut(s) 78
XcmI CCANNNNNNNNNTGG 1 cut(s) 304
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.