RLG00000021651

mitochondrial saccharopine dehydrogenase-like oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
76999339 .. 77000002
664 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021651

Sequence Viewer

Length: 546 bp
ATGGAGGCCAACAATGTGCTTGGAGGCCACCGGCATGAAGACTTACTAAATTTATTTTCTCATGGTCATAACAACAGAATGGATCAGGGTTCACTTCTCAACAGTTCTATAGGAGCATTACACGTCATTTACTTTGGGAGTTTAGCTTTCATGATAATCCAAGTTGCCCGCAACAATGCAGATATCGGAGAGTTCATGAACAAGATTAGCCTCTTGTTTGGAAGTCTTGCCTTAGTTTTAGAATTGCTCATCCTTGTTCAACCTTTTGGATGGGTCATGCTCTTCATCTGGAGCATCTGTTTTCTAAGCGTTGTGACTAACTCGTACCAATTGTTGAAAACACTCTACGGAAGTGCAATTGCAGGTCTTCATCATCGCTCCCGCGAATTGAAAGAGAAGTTGATTGAACTGAATGGCCGCTTGATTGAAAGTAATGCATTTGTAGCACTTGCTTGTGTCTTTGAGAAATTGAAGGAGCTGATCGGTTGCTGGACAGAGCATGAAGCCCAAGACCAGAACCAGACCATCAATCACCTACCTGTTTAA

Protein Analysis

182

Amino Acids

20.34

Weight (kDa)

6.11

Isoelectric Point (pI)

28.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 353
AccII CGCG 1 cut(s) 384
AciI CCGC 3 cut(s) 169, 382, 418
AclWI GGATC 1 cut(s) 90
AcoI YGGCCR 1 cut(s) 415
AcsI RAATTY 1 cut(s) 49
AfaI GTAC 1 cut(s) 326
AflIII ACRYGT 1 cut(s) 121
AgsI TTSAA 6 cut(s) 260, 337, 391, 407, 428, 472
AjiI CACGTC 1 cut(s) 124
AluBI AGCT 2 cut(s) 146, 478
AluI AGCT 2 cut(s) 146, 478
AlwI GGATC 1 cut(s) 90
AoxI GGCC 3 cut(s) 6, 25, 415
ApoI RAATTY 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 524
BbsI GAAGAC 2 cut(s) 45, 359
BccI CCATC 2 cut(s) 264, 533
BfmI CTRYAG 1 cut(s) 108
BfuAI ACCTGC 1 cut(s) 353
BisI GCNGC 1 cut(s) 418
BlsI GCNGC 1 cut(s) 419
BmgBI CACGTC 1 cut(s) 124
BmsI GCATC 1 cut(s) 303
BpiI GAAGAC 2 cut(s) 45, 359
BpmI CTGGAG 1 cut(s) 310
BsaXI ACNNNNNCTCC 2 cut(s) 283, 313
Bse118I RCCGGY 1 cut(s) 30
BseGI GGATG 2 cut(s) 249, 275
Bsh1236I CGCG 1 cut(s) 384
BshFI GGCC 3 cut(s) 8, 27, 417
BsiSI CCGG 1 cut(s) 31
BsnI GGCC 3 cut(s) 8, 27, 417
Bsp143I GATC 2 cut(s) 82, 480
BspACI CCGC 3 cut(s) 169, 382, 418
BspANI GGCC 3 cut(s) 8, 27, 417
BspFNI CGCG 1 cut(s) 384
BspHI TCATGA 2 cut(s) 150, 195
BspMI ACCTGC 1 cut(s) 353
BspPI GGATC 1 cut(s) 90
BspQI GCTCTTC 1 cut(s) 287
BsrFI RCCGGY 1 cut(s) 30
BssAI RCCGGY 1 cut(s) 30
BssMI GATC 2 cut(s) 82, 480
Bst4CI ACNGT 1 cut(s) 104
Bst6I CTCTTC 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 2 cut(s) 232, 305
BstF5I GGATG 2 cut(s) 249, 275
BstFNI CGCG 1 cut(s) 384
BstKTI GATC 2 cut(s) 85, 483
BstMBI GATC 2 cut(s) 82, 480
BstMWI GCNNNNNNNGC 1 cut(s) 443
BstSFI CTRYAG 1 cut(s) 108
BstUI CGCG 1 cut(s) 384
BstV2I GAAGAC 2 cut(s) 45, 359
BsuRI GGCC 3 cut(s) 8, 27, 417
BtgZI GCGATG 1 cut(s) 359
BtrI CACGTC 1 cut(s) 124
BtsCI GGATG 2 cut(s) 249, 275
BveI ACCTGC 1 cut(s) 353
Cac8I GCNNGC 1 cut(s) 169
CciI TCATGA 2 cut(s) 150, 195
Cfr10I RCCGGY 1 cut(s) 30
Csp6I GTAC 1 cut(s) 325
CviAII CATG 6 cut(s) 35, 62, 151, 196, 277, 500
CviJI RGCY 7 cut(s) 8, 27, 146, 210, 417, 478, 506
CviKI_1 RGCY 7 cut(s) 8, 27, 146, 210, 417, 478, 506
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 2 cut(s) 232, 305
DpnI GATC 2 cut(s) 84, 482
DpnII GATC 2 cut(s) 82, 480
EaeI YGGCCR 1 cut(s) 415
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
Eco32I GATATC 1 cut(s) 184
EcoRV GATATC 1 cut(s) 184
EcoT22I ATGCAT 1 cut(s) 439
FaeI CATG 6 cut(s) 38, 65, 154, 199, 280, 503
FaiI YATR 8 cut(s) 36, 63, 69, 110, 152, 197, 278, 501
FatI CATG 6 cut(s) 34, 61, 150, 195, 276, 499
FauI CCCGC 2 cut(s) 176, 389
Fnu4HI GCNGC 1 cut(s) 418
FokI GGATG 2 cut(s) 236, 282
Fsp4HI GCNGC 1 cut(s) 418
GluI GCNGC 1 cut(s) 418
GsuI CTGGAG 1 cut(s) 310
HaeIII GGCC 3 cut(s) 8, 27, 417
HapII CCGG 1 cut(s) 31
Hin1II CATG 6 cut(s) 38, 65, 154, 199, 280, 503
HpaII CCGG 1 cut(s) 31
HphI GGTGA 1 cut(s) 524
Hpy166II GTNNAC 1 cut(s) 92
Hpy188I TCNGA 1 cut(s) 188
Hpy188III TCNNGA 3 cut(s) 151, 196, 289
Hpy8I GTNNAC 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 466
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 4 cut(s) 179, 356, 362, 437
HpyF10VI GCNNNNNNNGC 1 cut(s) 443
HpyF3I CTNAG 2 cut(s) 232, 305
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 6 cut(s) 38, 65, 154, 199, 280, 503
Kzo9I GATC 2 cut(s) 82, 480
LguI GCTCTTC 1 cut(s) 287
LmnI GCTCC 4 cut(s) 113, 291, 383, 475
LpnPI CCDG 7 cut(s) 44, 71, 274, 348, 475, 527, 533
LweI GCATC 1 cut(s) 303
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 313
MalI GATC 2 cut(s) 84, 482
MboI GATC 2 cut(s) 82, 480
MboII GAAGA 3 cut(s) 50, 274, 359
MfeI CAATTG 2 cut(s) 329, 357
MluCI AATT 6 cut(s) 49, 242, 329, 357, 386, 467
MnlI CCTC 2 cut(s) 17, 221
Mph1103I ATGCAT 1 cut(s) 439
MseI TTAA 1 cut(s) 544
MslI CAYNNNNRTG 1 cut(s) 33
MspI CCGG 1 cut(s) 31
MunI CAATTG 2 cut(s) 329, 357
MvnI CGCG 1 cut(s) 384
MwoI GCNNNNNNNGC 1 cut(s) 443
NdeII GATC 2 cut(s) 82, 480
NlaIII CATG 6 cut(s) 38, 65, 154, 199, 280, 503
NmuCI GTSAC 1 cut(s) 313
NsiI ATGCAT 1 cut(s) 439
PagI TCATGA 2 cut(s) 150, 195
PciSI GCTCTTC 1 cut(s) 287
PkrI GCNGC 1 cut(s) 419
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
RseI CAYNNNNRTG 1 cut(s) 33
SapI GCTCTTC 1 cut(s) 287
SaqAI TTAA 1 cut(s) 544
SatI GCNGC 1 cut(s) 418
Sau3AI GATC 2 cut(s) 82, 480
SetI ASST 7 cut(s) 126, 148, 265, 367, 480, 537, 541
SfaNI GCATC 1 cut(s) 303
SfcI CTRYAG 1 cut(s) 108
SmiMI CAYNNNNRTG 1 cut(s) 33
Sse9I AATT 6 cut(s) 49, 242, 329, 357, 386, 467
SsiI CCGC 3 cut(s) 169, 382, 418
TaaI ACNGT 1 cut(s) 104
TaiI ACGT 1 cut(s) 126
TasI AATT 6 cut(s) 49, 242, 329, 357, 386, 467
TauI GCSGC 1 cut(s) 420
Tru1I TTAA 1 cut(s) 544
Tru9I TTAA 1 cut(s) 544
TseFI GTSAC 1 cut(s) 313
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 7 cut(s) 51, 139, 184, 212, 274, 359, 516
TspGWI ACGGA 1 cut(s) 363
XapI RAATTY 1 cut(s) 49
Zsp2I ATGCAT 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.