Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Reverse (-)

84661418 .. 84661810

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG615500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGAGGAGTTTGCAAATTGGAGAAGTTCTGTAATGGCATTGCACAAATGCATTCTCTCTCTCATCACCATTTTAGGCTTTTTCCTCCAACTGAAGTTCACAAAGGCGTCTCCATTTGTGCGGGACAACCGAAATACTATACTGATGAGGCTATTTATTATTGACATATCTGCTTACTGTGGATCATTTGGTGTCATGATACTCCAGACTAATCACAGTAACACAGACTTTGGAGAATTCATGAATAGGATCAGCGTCTTGCTTGGAACTTTGGCTTCTATTTTACAGTTGCTCATCTTGTTTCCGCATTTTGGATGGTTCGCGTTCTTCTTCTGGAGCATCTATTTTCTTACCTTTGCAATTAAGTCATACCAATACTCGAAAACACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

130

Amino Acids

15.15

Weight (kDa)

9.34

Isoelectric Point (pI)

37.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	323
AciI	CCGC	2 cut(s)	121, 305
AclWI	GGATC	2 cut(s)	190, 257
AcsI	RAATTY	1 cut(s)	236
AcuI	CTGAAG	1 cut(s)	113
AcyI	GRCGYC	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	311
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	2 cut(s)	190, 257
ApoI	RAATTY	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	58
BccI	CCATC	1 cut(s)	309
BcoDI	GTCTC	1 cut(s)	114
BmsI	GCATC	1 cut(s)	348
BpmI	CTGGAG	2 cut(s)	188, 355
BsaHI	GRCGYC	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
Bse3DI	GCAATG	1 cut(s)	38
BseGI	GGATG	1 cut(s)	320
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseMI	GCAATG	1 cut(s)	38
BseRI	GAGGAG	1 cut(s)	20
Bsh1236I	CGCG	1 cut(s)	323
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	311
BsmAI	GTCTC	1 cut(s)	114
BsmBI	CGTCTC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	137
BsmI	GAATGC	1 cut(s)	51
Bsp143I	GATC	2 cut(s)	182, 249
BspACI	CCGC	2 cut(s)	121, 305
BspFNI	CGCG	1 cut(s)	323
BspHI	TCATGA	2 cut(s)	195, 240
BspPI	GGATC	2 cut(s)	190, 257
BsrDI	GCAATG	1 cut(s)	38
BssMI	GATC	2 cut(s)	182, 249
BssNI	GRCGYC	1 cut(s)	107
Bst4CI	ACNGT	4 cut(s)	179, 218, 288, 390
BstACI	GRCGYC	1 cut(s)	107
BstF5I	GGATG	1 cut(s)	320
BstFNI	CGCG	1 cut(s)	323
BstKTI	GATC	2 cut(s)	185, 252
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	2 cut(s)	182, 249
BstUI	CGCG	1 cut(s)	323
BtsCI	GGATG	1 cut(s)	320
BtsIMutI	CAGTG	1 cut(s)	386
CciI	TCATGA	2 cut(s)	195, 240
CseI	GACGC	2 cut(s)	96, 244
CviAII	CATG	2 cut(s)	196, 241
CviJI	RGCY	3 cut(s)	78, 151, 275
CviKI_1	RGCY	3 cut(s)	78, 151, 275
DpnI	GATC	2 cut(s)	184, 251
DpnII	GATC	2 cut(s)	182, 249
Eco57I	CTGAAG	1 cut(s)	113
EcoRI	GAATTC	1 cut(s)	236
EcoT22I	ATGCAT	1 cut(s)	53
Esp3I	CGTCTC	1 cut(s)	114
FaeI	CATG	2 cut(s)	199, 244
FaiI	YATR	5 cut(s)	140, 167, 197, 242, 370
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	2 cut(s)	195, 240
FauI	CCCGC	1 cut(s)	114
FokI	GGATG	1 cut(s)	327
GsuI	CTGGAG	2 cut(s)	188, 355
HgaI	GACGC	2 cut(s)	96, 244
Hin1I	GRCGYC	1 cut(s)	107
Hin1II	CATG	2 cut(s)	199, 244
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188III	TCNNGA	4 cut(s)	196, 205, 241, 334
Hpy8I	GTNNAC	1 cut(s)	99
HpyCH4III	ACNGT	4 cut(s)	179, 218, 288, 390
HpyCH4V	TGCA	4 cut(s)	14, 43, 51, 359
Hsp92I	GRCGYC	1 cut(s)	107
Hsp92II	CATG	2 cut(s)	199, 244
Kzo9I	GATC	2 cut(s)	182, 249
LmnI	GCTCC	1 cut(s)	336
LpnPI	CCDG	2 cut(s)	218, 319
LweI	GCATC	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	2 cut(s)	184, 251
MboI	GATC	2 cut(s)	182, 249
MboII	GAAGA	2 cut(s)	319, 322
MluCI	AATT	3 cut(s)	16, 236, 360
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	2 cut(s)	95, 141
Mph1103I	ATGCAT	1 cut(s)	53
MseI	TTAA	1 cut(s)	363
Mva1269I	GAATGC	1 cut(s)	51
MvnI	CGCG	1 cut(s)	323
NdeII	GATC	2 cut(s)	182, 249
NlaIII	CATG	2 cut(s)	199, 244
NsiI	ATGCAT	1 cut(s)	53
PagI	TCATGA	2 cut(s)	195, 240
PctI	GAATGC	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	363
Sau3AI	GATC	2 cut(s)	182, 249
SetI	ASST	1 cut(s)	356
SfaNI	GCATC	1 cut(s)	348
SgeI	CNNG	9 cut(s)	134, 208, 217, 253, 271, 275, 310, 334, 346
Sse9I	AATT	3 cut(s)	16, 236, 360
SsiI	CCGC	2 cut(s)	121, 305
TaaI	ACNGT	4 cut(s)	179, 218, 288, 390
TaqI	TCGA	1 cut(s)	380
TasI	AATT	3 cut(s)	16, 236, 360
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	1 cut(s)	393
TspDTI	ATGAA	2 cut(s)	229, 257
TspRI	CASTG	1 cut(s)	393
XapI	RAATTY	1 cut(s)	236
Zsp2I	ATGCAT	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.