FvH4_6g47643

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000247
Physical Location & Seq
Reverse (-)
36044902 .. 36046585
1684 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g47643.t1

Sequence Viewer

Length: 753 bp
ATGTCGATCGACTTGTCTCCACACTGCTATCCTGTACAAGTCTATATATTGTTGTTCACGAGTAAGAAGAGCTCTGCAAAAATCATCAACACATTGGCTTGCTCAAGAGTAAGAAGAGCTCTGCAAAAATCATCAACACATTGGCTTGCTCAAGAGTACGAAGAGCTCTGCGGAAAGCTGTTTGTGGAATCAATGGAGGACGGCACTTCTGTTAACTCTCAACCTTTACAAGTCAACAAAATGGAGGAGTTTGCAAATTGGAGAAGTTCTGTAATGGCATTGCACAAAAGCATTTTCTTTCTCATCACCATTTTAGGCCTTTGCCTCCAACTGAAGTTCACAACTGCGTCTCCATTTGTGCTGGACTACAGAAACATTGTACTCATGAGGCTATTTATCATTGACATATCCGCTTACTGTGGATCATTTGGTGTCGTGATTCTCCAAACCATTCACAGTAACACAGACTTTGGTGAATGCATGAATAACATTAGCCTCTTGCTTGGAACTCTTGCTTCTATTTTAGAGTTGCTCATCCTGTTTCCGCCTTTCGGATGGGTCACGCTCTTCTTCTGGAGCATCAGTTTCGTTACCGTTGCGATCAGGTCATACCGATACTCGAAAACACTATGTGACAGTGTAGTTTCCGGACTCAGTCGTGCTTACGAGAAATTGAAGGATCTGATCAAGAGGAGCCGCTATTCGACAGAGCATGATGAAACCAAGGACCAGAGCAAGAAGCTACCAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

251

Amino Acids

28.47

Weight (kDa)

8.78

Isoelectric Point (pI)

58.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 647
AciI CCGC 4 cut(s) 171, 411, 545, 697
AclWI GGATC 2 cut(s) 430, 687
AcuI CTGAAG 1 cut(s) 353
AdeI CACNNNGTG 1 cut(s) 632
AfaI GTAC 3 cut(s) 36, 158, 381
AfiI CCNNNNNNNGG 1 cut(s) 551
AgsI TTSAA 1 cut(s) 676
AluBI AGCT 5 cut(s) 72, 119, 166, 178, 742
AluI AGCT 5 cut(s) 72, 119, 166, 178, 742
Alw21I GWGCWC 3 cut(s) 74, 121, 168
Alw26I GTCTC 2 cut(s) 21, 354
AlwI GGATC 2 cut(s) 430, 687
Aor13HI TCCGGA 1 cut(s) 647
AoxI GGCC 1 cut(s) 316
AspS9I GGNCC 1 cut(s) 727
AsuHPI GGTGA 2 cut(s) 298, 485
AvaII GGWCC 1 cut(s) 727
BanII GRGCYC 3 cut(s) 74, 121, 168
BauI CACGAG 1 cut(s) 58
Bbv12I GWGCWC 3 cut(s) 74, 121, 168
BccI CCATC 1 cut(s) 549
BceAI ACGGC 1 cut(s) 217
BcgI CGANNNNNNTGC 2 cut(s) 568, 602
BclI TGATCA 1 cut(s) 684
BcoDI GTCTC 2 cut(s) 21, 354
BfmI CTRYAG 1 cut(s) 367
BisI GCNGC 1 cut(s) 697
BlsI GCNGC 1 cut(s) 698
Bme18I GGWCC 1 cut(s) 727
BmgT120I GGNCC 1 cut(s) 727
BmiI GGNNCC 1 cut(s) 695
BmsI GCATC 1 cut(s) 588
BpmI CTGGAG 1 cut(s) 595
BpuEI CTTGAG 2 cut(s) 88, 135
BsaJI CCNNGG 1 cut(s) 723
BsaWI WCCGGW 1 cut(s) 647
BsaXI ACNNNNNCTCC 4 cut(s) 334, 364, 568, 598
Bsc4I CCNNNNNNNGG 1 cut(s) 551
Bse1I ACTGG 1 cut(s) 746
Bse3DI GCAATG 1 cut(s) 278
BseAI TCCGGA 1 cut(s) 647
BseDI CCNNGG 1 cut(s) 723
BseGI GGATG 2 cut(s) 534, 560
BseLI CCNNNNNNNGG 1 cut(s) 551
BseMI GCAATG 1 cut(s) 278
BseMII CTCAG 1 cut(s) 667
BseNI ACTGG 1 cut(s) 746
BseRI GAGGAG 2 cut(s) 260, 706
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 1 cut(s) 318
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 3 cut(s) 74, 121, 168
BsiSI CCGG 1 cut(s) 648
BslI CCNNNNNNNGG 1 cut(s) 551
BsmAI GTCTC 2 cut(s) 21, 354
BsmBI CGTCTC 1 cut(s) 354
BsmI GAATGC 1 cut(s) 482
BsnI GGCC 1 cut(s) 318
Bsp1286I GDGCHC 3 cut(s) 74, 121, 168
Bsp13I TCCGGA 1 cut(s) 647
Bsp1407I TGTACA 1 cut(s) 34
Bsp143I GATC 5 cut(s) 6, 422, 600, 679, 684
BspACI CCGC 4 cut(s) 171, 411, 545, 697
BspANI GGCC 1 cut(s) 318
BspCNI CTCAG 1 cut(s) 666
BspEI TCCGGA 1 cut(s) 647
BspHI TCATGA 1 cut(s) 384
BspLI GGNNCC 1 cut(s) 695
BspPI GGATC 2 cut(s) 430, 687
BspQI GCTCTTC 4 cut(s) 62, 109, 156, 572
BsrDI GCAATG 1 cut(s) 278
BsrGI TGTACA 1 cut(s) 34
BsrI ACTGG 1 cut(s) 746
BssECI CCNNGG 1 cut(s) 723
BssMI GATC 5 cut(s) 6, 422, 600, 679, 684
BssSI CACGAG 1 cut(s) 58
BssT1I CCWWGG 1 cut(s) 723
Bst2BI CACGAG 1 cut(s) 58
Bst4CI ACNGT 4 cut(s) 419, 458, 595, 638
Bst6I CTCTTC 4 cut(s) 62, 109, 156, 572
BstAUI TGTACA 1 cut(s) 34
BstC8I GCNNGC 2 cut(s) 100, 147
BstDEI CTNAG 1 cut(s) 653
BstF5I GGATG 2 cut(s) 534, 560
BstKTI GATC 5 cut(s) 9, 425, 603, 682, 687
BstMAI GTCTC 2 cut(s) 21, 354
BstMBI GATC 5 cut(s) 6, 422, 600, 679, 684
BstMCI CGRYCG 1 cut(s) 9
BstSFI CTRYAG 1 cut(s) 367
BstX2I RGATCY 1 cut(s) 679
BstYI RGATCY 1 cut(s) 679
BsuRI GGCC 1 cut(s) 318
BtsCI GGATG 2 cut(s) 534, 560
BtsI GCAGTG 1 cut(s) 22
BtsIMutI CAGTG 3 cut(s) 22, 643, 753
Cac8I GCNNGC 2 cut(s) 100, 147
CciI TCATGA 1 cut(s) 384
Cfr13I GGNCC 1 cut(s) 727
CseI GACGC 1 cut(s) 336
Csp6I GTAC 3 cut(s) 35, 157, 380
CviAII CATG 3 cut(s) 385, 481, 713
CviQI GTAC 3 cut(s) 35, 157, 380
DdeI CTNAG 1 cut(s) 653
DpnI GATC 5 cut(s) 8, 424, 602, 681, 686
DpnII GATC 5 cut(s) 6, 422, 600, 679, 684
DraIII CACNNNGTG 1 cut(s) 632
Eam1104I CTCTTC 4 cut(s) 62, 109, 156, 572
EarI CTCTTC 4 cut(s) 62, 109, 156, 572
EciI GGCGGA 1 cut(s) 534
Ecl136II GAGCTC 3 cut(s) 72, 119, 166
Eco130I CCWWGG 1 cut(s) 723
Eco147I AGGCCT 1 cut(s) 318
Eco24I GRGCYC 3 cut(s) 74, 121, 168
Eco47I GGWCC 1 cut(s) 727
Eco53kI GAGCTC 3 cut(s) 72, 119, 166
Eco57I CTGAAG 1 cut(s) 353
EcoICRI GAGCTC 3 cut(s) 72, 119, 166
EcoT14I CCWWGG 1 cut(s) 723
EcoT22I ATGCAT 1 cut(s) 482
EcoT38I GRGCYC 3 cut(s) 74, 121, 168
ErhI CCWWGG 1 cut(s) 723
Esp3I CGTCTC 1 cut(s) 354
FaeI CATG 3 cut(s) 388, 484, 716
FaiI YATR 8 cut(s) 45, 47, 386, 407, 482, 610, 631, 714
FatI CATG 3 cut(s) 384, 480, 712
FbaI TGATCA 1 cut(s) 684
Fnu4HI GCNGC 1 cut(s) 697
FokI GGATG 2 cut(s) 521, 567
FriOI GRGCYC 3 cut(s) 74, 121, 168
Fsp4HI GCNGC 1 cut(s) 697
GluI GCNGC 1 cut(s) 697
GsuI CTGGAG 1 cut(s) 595
HaeIII GGCC 1 cut(s) 318
HapII CCGG 1 cut(s) 648
HgaI GACGC 1 cut(s) 336
Hin1II CATG 3 cut(s) 388, 484, 716
HincII GTYRAC 2 cut(s) 214, 235
HindII GTYRAC 2 cut(s) 214, 235
HinfI GANTC 3 cut(s) 188, 439, 651
HpaI GTTAAC 1 cut(s) 214
HpaII CCGG 1 cut(s) 648
HphI GGTGA 2 cut(s) 298, 485
Hpy166II GTNNAC 4 cut(s) 57, 214, 235, 339
Hpy188I TCNGA 2 cut(s) 554, 684
Hpy188III TCNNGA 8 cut(s) 58, 105, 152, 385, 436, 574, 648, 688
Hpy8I GTNNAC 4 cut(s) 57, 214, 235, 339
HpyAV CCTTC 1 cut(s) 670
HpyCH4III ACNGT 4 cut(s) 419, 458, 595, 638
HpyCH4V TGCA 5 cut(s) 77, 124, 254, 283, 480
HpyF3I CTNAG 1 cut(s) 653
Hsp92II CATG 3 cut(s) 388, 484, 716
Kpn2I TCCGGA 1 cut(s) 647
Ksp22I TGATCA 1 cut(s) 684
KspAI GTTAAC 1 cut(s) 214
Kzo9I GATC 5 cut(s) 6, 422, 600, 679, 684
LguI GCTCTTC 4 cut(s) 62, 109, 156, 572
LmnI GCTCC 2 cut(s) 576, 693
LpnPI CCDG 7 cut(s) 45, 347, 551, 559, 589, 661, 743
LweI GCATC 1 cut(s) 588
MaeIII GTNAC 4 cut(s) 458, 559, 589, 632
MalI GATC 5 cut(s) 8, 424, 602, 681, 686
MboI GATC 5 cut(s) 6, 422, 600, 679, 684
MboII GAAGA 5 cut(s) 79, 126, 173, 559, 562
MflI RGATCY 1 cut(s) 679
MhlI GDGCHC 3 cut(s) 74, 121, 168
MluCI AATT 2 cut(s) 256, 671
MlyI GAGTC 1 cut(s) 645
MmeI TCCRAC 1 cut(s) 352
MnlI CCTC 6 cut(s) 190, 238, 335, 381, 506, 684
Mph1103I ATGCAT 1 cut(s) 482
MroI TCCGGA 1 cut(s) 647
MseI TTAA 1 cut(s) 213
MspI CCGG 1 cut(s) 648
Mva1269I GAATGC 1 cut(s) 482
NdeII GATC 5 cut(s) 6, 422, 600, 679, 684
NlaIII CATG 3 cut(s) 388, 484, 716
NlaIV GGNNCC 1 cut(s) 695
NmuCI GTSAC 2 cut(s) 559, 632
NsiI ATGCAT 1 cut(s) 482
PagI TCATGA 1 cut(s) 384
PceI AGGCCT 1 cut(s) 318
PciSI GCTCTTC 4 cut(s) 62, 109, 156, 572
PctI GAATGC 1 cut(s) 482
PfeI GAWTC 2 cut(s) 188, 439
PflFI GACNNNGTC 1 cut(s) 654
PkrI GCNGC 1 cut(s) 698
Ple19I CGATCG 1 cut(s) 9
PleI GAGTC 1 cut(s) 645
PpsI GAGTC 1 cut(s) 645
Psp124BI GAGCTC 3 cut(s) 74, 121, 168
PspN4I GGNNCC 1 cut(s) 695
PspPI GGNCC 1 cut(s) 727
PsuI RGATCY 1 cut(s) 679
PsyI GACNNNGTC 1 cut(s) 654
PvuI CGATCG 1 cut(s) 9
RsaI GTAC 3 cut(s) 36, 158, 381
RsaNI GTAC 3 cut(s) 35, 157, 380
SacI GAGCTC 3 cut(s) 74, 121, 168
SapI GCTCTTC 4 cut(s) 62, 109, 156, 572
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 1 cut(s) 697
Sau3AI GATC 5 cut(s) 6, 422, 600, 679, 684
Sau96I GGNCC 1 cut(s) 727
SchI GAGTC 1 cut(s) 645
SduI GDGCHC 3 cut(s) 74, 121, 168
SetI ASST 7 cut(s) 74, 121, 168, 180, 226, 608, 744
SfaNI GCATC 1 cut(s) 588
SfcI CTRYAG 1 cut(s) 367
SinI GGWCC 1 cut(s) 727
SmlI CTYRAG 2 cut(s) 103, 150
SmoI CTYRAG 2 cut(s) 103, 150
Sse9I AATT 2 cut(s) 256, 671
SseBI AGGCCT 1 cut(s) 318
SsiI CCGC 4 cut(s) 171, 411, 545, 697
SstI GAGCTC 3 cut(s) 74, 121, 168
StuI AGGCCT 1 cut(s) 318
StyI CCWWGG 1 cut(s) 723
TaaI ACNGT 4 cut(s) 419, 458, 595, 638
TaqI TCGA 4 cut(s) 5, 9, 620, 704
TasI AATT 2 cut(s) 256, 671
TatI WGTACW 2 cut(s) 34, 379
TauI GCSGC 1 cut(s) 699
TfiI GAWTC 2 cut(s) 188, 439
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 3 cut(s) 29, 643, 753
TseFI GTSAC 2 cut(s) 559, 632
Tsp45I GTSAC 2 cut(s) 559, 632
TspDTI ATGAA 2 cut(s) 497, 732
TspRI CASTG 3 cut(s) 29, 643, 753
Tth111I GACNNNGTC 1 cut(s) 654
VpaK11BI GGWCC 1 cut(s) 727
Zsp2I ATGCAT 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.