Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Reverse (-)

77022533 .. 77023120

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021653

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGAGGAGTGTGCACGCCGGACCAAATCTATGGTGGGATCGAACAAATGCATTGTTTCTCTCATTGCCATCTTAGGCTTTTGCCCCCAACTGAAATTTGCATATTCGTCTCCAGACTACAGCAGTACACTATTGATGAGGCTGTTTGTTATCGACATATCGGCTTACTTCGGGTCAATAGGTGTCATGATACTCCAAACTGATCACAGTACAACAGACTTTCGAAATTTGATGAATAGGATCATCATCTTGTTGGGAGCTTTTGCTTGCATTTTAGAACTGCTCATCCTCGTTCCACCTTTTGGATGGCTCGTTCTCTTCTTCTGGAGTATCTGTTTTGTTAGCGTTGCGAGTAAGTCATACCAATACTTGAAAACACAATGTGAAAGTGCGGTTTCAGCTCTTGTTCTAGCCTCTGGCGAATTGAAAGAGAAGCTGATAGCGATGAATGGCCGTTTGATGGAGAATTTCGCAGTTTCAGGGATTTTTCGTGCCTGTAAAAAACTGAAAATGCTTATCAGAATTTTCCGCTGCACTGAGCATGAAGCCCAGAACCAGAACCAGATCATCAATGGGTTACTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

196

Amino Acids

21.9

Weight (kDa)

8.95

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	302
AciI	CCGC	2 cut(s)	392, 529
AclWI	GGATC	2 cut(s)	46, 248
AcoI	YGGCCR	1 cut(s)	451
AcsI	RAATTY	4 cut(s)	95, 226, 466, 522
AdeI	CACNNNGTG	1 cut(s)	383
AfaI	GTAC	2 cut(s)	127, 211
AfiI	CCNNNNNNNGG	2 cut(s)	302, 460
AgsI	TTSAA	2 cut(s)	373, 427
AloI	GAACNNNNNNTCC	4 cut(s)	270, 297, 302, 329
AluBI	AGCT	3 cut(s)	260, 401, 436
AluI	AGCT	3 cut(s)	260, 401, 436
Alw21I	GWGCWC	1 cut(s)	16
Alw26I	GTCTC	1 cut(s)	114
Alw44I	GTGCAC	1 cut(s)	12
AlwI	GGATC	2 cut(s)	46, 248
AoxI	GGCC	1 cut(s)	451
ApaLI	GTGCAC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	531
ApoI	RAATTY	4 cut(s)	95, 226, 466, 522
AspS9I	GGNCC	1 cut(s)	21
AsuII	TTCGAA	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	21
BaeGI	GKGCMC	1 cut(s)	16
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	518
BccI	CCATC	3 cut(s)	77, 300, 454
BceAI	ACGGC	1 cut(s)	438
BclI	TGATCA	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	1 cut(s)	410
BfmI	CTRYAG	1 cut(s)	118
BisI	GCNGC	1 cut(s)	532
BlsI	GCNGC	1 cut(s)	533
Bme18I	GGWCC	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	21
BpmI	CTGGAG	2 cut(s)	96, 346
Bpu14I	TTCGAA	1 cut(s)	223
BsaBI	GATNNNNATC	1 cut(s)	245
BsaXI	ACNNNNNCTCC	2 cut(s)	319, 349
Bsc4I	CCNNNNNNNGG	2 cut(s)	302, 460
Bse3DI	GCAATG	1 cut(s)	63
Bse8I	GATNNNNATC	1 cut(s)	245
BseGI	GGATG	2 cut(s)	285, 311
BseJI	GATNNNNATC	1 cut(s)	245
BseLI	CCNNNNNNNGG	2 cut(s)	302, 460
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	528
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	16
BseXI	GCAGC	1 cut(s)	518
BsgI	GTGCAG	1 cut(s)	517
BshFI	GGCC	1 cut(s)	453
BsiHKAI	GWGCWC	1 cut(s)	16
BsiSI	CCGG	1 cut(s)	19
BslI	CCNNNNNNNGG	2 cut(s)	302, 460
BsmAI	GTCTC	1 cut(s)	114
BsmBI	CGTCTC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	453
Bsp119I	TTCGAA	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	4 cut(s)	38, 202, 240, 564
BspACI	CCGC	2 cut(s)	392, 529
BspANI	GGCC	1 cut(s)	453
BspCNI	CTCAG	1 cut(s)	529
BspHI	TCATGA	1 cut(s)	186
BspPI	GGATC	2 cut(s)	46, 248
BspT104I	TTCGAA	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	63
BssMI	GATC	4 cut(s)	38, 202, 240, 564
Bst4CI	ACNGT	1 cut(s)	209
Bst6I	CTCTTC	1 cut(s)	323
BstBI	TTCGAA	1 cut(s)	223
BstC8I	GCNNGC	2 cut(s)	16, 268
BstDEI	CTNAG	2 cut(s)	73, 537
BstF5I	GGATG	2 cut(s)	285, 311
BstKTI	GATC	4 cut(s)	41, 205, 243, 567
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	4 cut(s)	38, 202, 240, 564
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstSFI	CTRYAG	1 cut(s)	118
BstSLI	GKGCMC	1 cut(s)	16
BstV1I	GCAGC	1 cut(s)	518
BstXI	CCANNNNNNTGG	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	453
BtgZI	GCGATG	1 cut(s)	458
BtsCI	GGATG	2 cut(s)	285, 311
BtsIMutI	CAGTG	1 cut(s)	534
Cac8I	GCNNGC	2 cut(s)	16, 268
CciI	TCATGA	1 cut(s)	186
Cfr13I	GGNCC	1 cut(s)	21
Csp6I	GTAC	2 cut(s)	126, 210
CviAII	CATG	2 cut(s)	187, 542
CviQI	GTAC	2 cut(s)	126, 210
DdeI	CTNAG	2 cut(s)	73, 537
DpnI	GATC	4 cut(s)	40, 204, 242, 566
DpnII	GATC	4 cut(s)	38, 202, 240, 564
DraIII	CACNNNGTG	1 cut(s)	383
EaeI	YGGCCR	1 cut(s)	451
Eam1104I	CTCTTC	1 cut(s)	323
EarI	CTCTTC	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	21
EcoT22I	ATGCAT	1 cut(s)	53
Esp3I	CGTCTC	1 cut(s)	114
FaeI	CATG	2 cut(s)	190, 545
FaiI	YATR	6 cut(s)	32, 103, 158, 188, 361, 543
FatI	CATG	2 cut(s)	186, 541
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	1 cut(s)	532
FokI	GGATG	2 cut(s)	272, 318
Fsp4HI	GCNGC	1 cut(s)	532
FspBI	CTAG	1 cut(s)	410
GluI	GCNGC	1 cut(s)	532
GsuI	CTGGAG	2 cut(s)	96, 346
HaeIII	GGCC	1 cut(s)	453
HapII	CCGG	1 cut(s)	19
Hin1II	CATG	2 cut(s)	190, 545
HpaII	CCGG	1 cut(s)	19
Hpy166II	GTNNAC	2 cut(s)	14, 128
Hpy188I	TCNGA	1 cut(s)	521
Hpy188III	TCNNGA	3 cut(s)	113, 187, 325
Hpy8I	GTNNAC	2 cut(s)	14, 128
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4V	TGCA	5 cut(s)	14, 51, 101, 270, 534
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	2 cut(s)	73, 537
Hsp92II	CATG	2 cut(s)	190, 545
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	4 cut(s)	38, 202, 240, 564
LmnI	GCTCC	1 cut(s)	257
LpnPI	CCDG	9 cut(s)	32, 126, 310, 402, 465, 508, 563, 569, 575
Lsp1109I	GCAGC	1 cut(s)	518
MaeI	CTAG	1 cut(s)	410
MaeIII	GTNAC	1 cut(s)	576
MalI	GATC	4 cut(s)	40, 204, 242, 566
MboI	GATC	4 cut(s)	38, 202, 240, 564
MboII	GAAGA	2 cut(s)	310, 313
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	5 cut(s)	95, 226, 422, 466, 522
MnlI	CCTC	3 cut(s)	132, 299, 424
Mph1103I	ATGCAT	1 cut(s)	53
MseI	TTAA	1 cut(s)	586
MspA1I	CMGCKG	1 cut(s)	531
MspI	CCGG	1 cut(s)	19
MwoI	GCNNNNNNNGC	1 cut(s)	398
NdeII	GATC	4 cut(s)	38, 202, 240, 564
NlaIII	CATG	2 cut(s)	190, 545
NsiI	ATGCAT	1 cut(s)	53
NspV	TTCGAA	1 cut(s)	223
PagI	TCATGA	1 cut(s)	186
PflMI	CCANNNNNTGG	1 cut(s)	302
PkrI	GCNGC	1 cut(s)	533
PspPI	GGNCC	1 cut(s)	21
RsaI	GTAC	2 cut(s)	127, 211
RsaNI	GTAC	2 cut(s)	126, 210
SaqAI	TTAA	1 cut(s)	586
SatI	GCNGC	1 cut(s)	532
Sau3AI	GATC	4 cut(s)	38, 202, 240, 564
Sau96I	GGNCC	1 cut(s)	21
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	5 cut(s)	184, 262, 301, 403, 438
SfcI	CTRYAG	1 cut(s)	118
SfuI	TTCGAA	1 cut(s)	223
SinI	GGWCC	1 cut(s)	21
Sse9I	AATT	5 cut(s)	95, 226, 422, 466, 522
SsiI	CCGC	2 cut(s)	392, 529
SspMI	CTAG	1 cut(s)	410
TaaI	ACNGT	1 cut(s)	209
TaqI	TCGA	3 cut(s)	41, 153, 223
TasI	AATT	5 cut(s)	95, 226, 422, 466, 522
TatI	WGTACW	2 cut(s)	125, 209
Tru1I	TTAA	1 cut(s)	586
Tru9I	TTAA	1 cut(s)	586
TscAI	CASTG	1 cut(s)	541
TseI	GCWGC	1 cut(s)	531
TspDTI	ATGAA	3 cut(s)	248, 461, 558
TspRI	CASTG	1 cut(s)	541
Van91I	CCANNNNNTGG	1 cut(s)	302
VneI	GTGCAC	1 cut(s)	12
VpaK11BI	GGWCC	1 cut(s)	21
XapI	RAATTY	4 cut(s)	95, 226, 466, 522
XcmI	CCANNNNNNNNNTGG	3 cut(s)	31, 303, 569
XspI	CTAG	1 cut(s)	410
Zsp2I	ATGCAT	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.