Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Forward (+)

9458559 .. 9461798

Gene Structure 3240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00340970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGAGAGAGCTGGCCACCAGAATGCCAATGCAAGACTACAGAGCACAACGAGGGAGAGTGGTCCTCCGGGATATTCTATAGTGACATTGCGGTCATTGCATTCATTCATTTTGGCTCTCATCGGAGTCCTAGGCTTCTGCCTCCAACTCAAGTTTCCAGATGCGTCTGCATTTGCGACCGCCTACGGCACTGTGATGATGGACCTCTTCATTATTGACACATGCTTTTACATCGTCTCTTTAGTTGTGATGGGAATCATGGCCGCTAGCAATAATACAGATTTCGAAGATCTGATGAACAAAATTAGCCTCTTACTTGGAAGTCTGTCCCTGATTTTAGAGTTGCTCGTCCTTATTCCACCTTTCGGATGGATCGTACTTTTCTTCTGGAGCATCTGGCTCTTATGCTTCCTGATTAAGTATTACTCTTCTCTGAACACACTCTACCAAAGTGCAGTTGCACTTGTTGTTGAAGACTATGGAGAATTGAAACAGAAGCTGGTTGATTTGAATCGTCGCTTGATGGACAGTGATGCAATTGCACCACTTGGTCGTGCCTATCAGACATTGAAGGACCTGATCATCAGGAATGACGGGCACATGACAGGGCATGAAGCCCAGAACCAGAACCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

211

Amino Acids

23.61

Weight (kDa)

5.66

Isoelectric Point (pI)

30.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	91
AciI	CCGC	3 cut(s)	91, 180, 264
AclWI	GGATC	1 cut(s)	380
AcoI	YGGCCR	2 cut(s)	13, 261
AfaI	GTAC	1 cut(s)	378
AfiI	CCNNNNNNNGG	1 cut(s)	365
AgsI	TTSAA	4 cut(s)	473, 490, 511, 571
AjuI	GAANNNNNNNTTGG	2 cut(s)	138, 170
AluBI	AGCT	2 cut(s)	11, 499
AluI	AGCT	2 cut(s)	11, 499
Alw21I	GWGCWC	1 cut(s)	47
Alw26I	GTCTC	1 cut(s)	241
AlwI	GGATC	1 cut(s)	380
AlwNI	CAGNNNCTG	1 cut(s)	499
AoxI	GGCC	2 cut(s)	13, 261
AspA2I	CCTAGG	1 cut(s)	130
AspS9I	GGNCC	3 cut(s)	62, 202, 574
AsuC2I	CCSGG	1 cut(s)	69
AsuII	TTCGAA	1 cut(s)	285
AsuNHI	GCTAGC	1 cut(s)	266
AvaII	GGWCC	3 cut(s)	62, 202, 574
AvrII	CCTAGG	1 cut(s)	130
BaeGI	GKGCMC	1 cut(s)	600
BalI	TGGCCA	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	480
Bbv12I	GWGCWC	1 cut(s)	47
BccI	CCATC	4 cut(s)	193, 244, 363, 517
BceAI	ACGGC	1 cut(s)	202
BclI	TGATCA	1 cut(s)	579
BcnI	CCSGG	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	241
BfaI	CTAG	2 cut(s)	131, 267
BfmI	CTRYAG	2 cut(s)	38, 78
BglII	AGATCT	1 cut(s)	289
BisI	GCNGC	1 cut(s)	264
BlnI	CCTAGG	1 cut(s)	130
BlsI	GCNGC	1 cut(s)	265
Bme1390I	CCNGG	1 cut(s)	69
Bme18I	GGWCC	3 cut(s)	62, 202, 574
BmgT120I	GGNCC	3 cut(s)	62, 202, 574
BmrFI	CCNGG	1 cut(s)	69
BmsI	GCATC	3 cut(s)	151, 402, 523
BmtI	GCTAGC	1 cut(s)	270
BpiI	GAAGAC	1 cut(s)	480
BplI	GAGNNNNNCTC	2 cut(s)	49, 81
BpmI	CTGGAG	1 cut(s)	409
Bpu14I	TTCGAA	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	69
BsaBI	GATNNNNATC	2 cut(s)	254, 510
BsaJI	CCNNGG	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
Bse3DI	GCAATG	2 cut(s)	86, 95
Bse8I	GATNNNNATC	2 cut(s)	254, 510
BseDI	CCNNGG	1 cut(s)	130
BseGI	GGATG	1 cut(s)	374
BseJI	GATNNNNATC	2 cut(s)	254, 510
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseMI	GCAATG	2 cut(s)	86, 95
BseSI	GKGCMC	1 cut(s)	600
BsgI	GTGCAG	1 cut(s)	474
Bsh1285I	CGRYCG	1 cut(s)	180
BshFI	GGCC	2 cut(s)	15, 263
BsiEI	CGRYCG	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	1 cut(s)	365
BsmAI	GTCTC	1 cut(s)	241
BsmBI	CGTCTC	1 cut(s)	241
BsmFI	GGGAC	1 cut(s)	313
BsmI	GAATGC	2 cut(s)	28, 100
BsnI	GGCC	2 cut(s)	15, 263
Bsp119I	TTCGAA	1 cut(s)	285
Bsp1286I	GDGCHC	2 cut(s)	47, 600
Bsp143I	GATC	3 cut(s)	289, 372, 579
BspACI	CCGC	3 cut(s)	91, 180, 264
BspANI	GGCC	2 cut(s)	15, 263
BspOI	GCTAGC	1 cut(s)	270
BspPI	GGATC	1 cut(s)	380
BspT104I	TTCGAA	1 cut(s)	285
BsrDI	GCAATG	2 cut(s)	86, 95
BssECI	CCNNGG	1 cut(s)	130
BssMI	GATC	3 cut(s)	289, 372, 579
BssT1I	CCWWGG	1 cut(s)	130
Bst4CI	ACNGT	2 cut(s)	193, 530
Bst6I	CTCTTC	2 cut(s)	212, 433
BstBI	TTCGAA	1 cut(s)	285
BstC8I	GCNNGC	2 cut(s)	13, 268
BstF5I	GGATG	1 cut(s)	374
BstKTI	GATC	3 cut(s)	292, 375, 582
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	3 cut(s)	289, 372, 579
BstMCI	CGRYCG	1 cut(s)	180
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstNSI	RCATGY	1 cut(s)	225
BstSCI	CCNGG	1 cut(s)	67
BstSFI	CTRYAG	2 cut(s)	38, 78
BstSLI	GKGCMC	1 cut(s)	600
BstV2I	GAAGAC	1 cut(s)	480
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	15, 263
BtsCI	GGATG	1 cut(s)	374
BtsIMutI	CAGTG	3 cut(s)	189, 535, 631
Cac8I	GCNNGC	2 cut(s)	13, 268
CaiI	CAGNNNCTG	1 cut(s)	499
Cfr13I	GGNCC	3 cut(s)	62, 202, 574
CseI	GACGC	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	377
CviAII	CATG	4 cut(s)	222, 259, 601, 611
CviJI	RGCY	9 cut(s)	11, 15, 116, 135, 263, 309, 400, 499, 617
CviKI_1	RGCY	9 cut(s)	11, 15, 116, 135, 263, 309, 400, 499, 617
CviQI	GTAC	1 cut(s)	377
DpnI	GATC	3 cut(s)	291, 374, 581
DpnII	GATC	3 cut(s)	289, 372, 579
DrdI	GACNNNNNNGTC	1 cut(s)	91
DseDI	GACNNNNNNGTC	1 cut(s)	91
EaeI	YGGCCR	2 cut(s)	13, 261
Eam1104I	CTCTTC	2 cut(s)	212, 433
EarI	CTCTTC	2 cut(s)	212, 433
Eco130I	CCWWGG	1 cut(s)	130
Eco47I	GGWCC	3 cut(s)	62, 202, 574
EcoO109I	RGGNCCY	1 cut(s)	574
EcoT14I	CCWWGG	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	130
Esp3I	CGTCTC	1 cut(s)	241
FaeI	CATG	4 cut(s)	225, 262, 604, 614
FaiI	YATR	7 cut(s)	80, 223, 260, 406, 480, 602, 612
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	4 cut(s)	221, 258, 600, 610
FbaI	TGATCA	1 cut(s)	579
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	1 cut(s)	381
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	2 cut(s)	131, 267
GluI	GCNGC	1 cut(s)	264
GsuI	CTGGAG	1 cut(s)	409
HaeIII	GGCC	2 cut(s)	15, 263
HapII	CCGG	1 cut(s)	68
HgaI	GACGC	1 cut(s)	153
Hin1II	CATG	4 cut(s)	225, 262, 604, 614
HinfI	GANTC	3 cut(s)	126, 255, 511
HpaII	CCGG	1 cut(s)	68
Hpy188I	TCNGA	5 cut(s)	125, 294, 368, 435, 564
Hpy188III	TCNNGA	4 cut(s)	158, 388, 412, 586
Hpy99I	CGWCG	1 cut(s)	519
HpyAV	CCTTC	1 cut(s)	565
HpyCH4III	ACNGT	2 cut(s)	193, 530
HpyCH4V	TGCA	7 cut(s)	32, 100, 170, 455, 461, 536, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
Hsp92II	CATG	4 cut(s)	225, 262, 604, 614
Ksp22I	TGATCA	1 cut(s)	579
Kzo9I	GATC	3 cut(s)	289, 372, 579
LmnI	GCTCC	1 cut(s)	390
LweI	GCATC	3 cut(s)	151, 402, 523
MaeI	CTAG	2 cut(s)	131, 267
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	3 cut(s)	291, 374, 581
MboI	GATC	3 cut(s)	289, 372, 579
MboII	GAAGA	5 cut(s)	199, 299, 376, 420, 485
MfeI	CAATTG	1 cut(s)	537
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	2 cut(s)	47, 600
MlsI	TGGCCA	1 cut(s)	15
MluCI	AATT	3 cut(s)	303, 485, 537
MluNI	TGGCCA	1 cut(s)	15
MlyI	GAGTC	1 cut(s)	135
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	5 cut(s)	45, 75, 152, 215, 320
Mox20I	TGGCCA	1 cut(s)	15
MscI	TGGCCA	1 cut(s)	15
MseI	TTAA	1 cut(s)	417
MslI	CAYNNNNRTG	2 cut(s)	21, 194
Msp20I	TGGCCA	1 cut(s)	15
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	69
MunI	CAATTG	1 cut(s)	537
Mva1269I	GAATGC	2 cut(s)	28, 100
MwoI	GCNNNNNNNGC	1 cut(s)	97
NciI	CCSGG	1 cut(s)	69
NdeII	GATC	3 cut(s)	289, 372, 579
NheI	GCTAGC	1 cut(s)	266
NlaIII	CATG	4 cut(s)	225, 262, 604, 614
NmuCI	GTSAC	1 cut(s)	82
NspI	RCATGY	1 cut(s)	225
NspV	TTCGAA	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PctI	GAATGC	2 cut(s)	28, 100
PfeI	GAWTC	2 cut(s)	255, 511
PfoI	TCCNGGA	1 cut(s)	67
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
PpuMI	RGGWCCY	1 cut(s)	574
Psp5II	RGGWCCY	1 cut(s)	574
PspPI	GGNCC	3 cut(s)	62, 202, 574
PspPPI	RGGWCCY	1 cut(s)	574
PsrI	GAACNNNNNNTAC	2 cut(s)	428, 460
PstNI	CAGNNNCTG	1 cut(s)	499
PsuI	RGATCY	1 cut(s)	289
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
RseI	CAYNNNNRTG	2 cut(s)	21, 194
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	3 cut(s)	289, 372, 579
Sau96I	GGNCC	3 cut(s)	62, 202, 574
SchI	GAGTC	1 cut(s)	135
ScrFI	CCNGG	1 cut(s)	69
SduI	GDGCHC	2 cut(s)	47, 600
SetI	ASST	5 cut(s)	13, 207, 364, 501, 579
SfaNI	GCATC	3 cut(s)	151, 402, 523
SfcI	CTRYAG	2 cut(s)	38, 78
SfuI	TTCGAA	1 cut(s)	285
SinI	GGWCC	3 cut(s)	62, 202, 574
SmiMI	CAYNNNNRTG	2 cut(s)	21, 194
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	3 cut(s)	303, 485, 537
SsiI	CCGC	3 cut(s)	91, 180, 264
SspMI	CTAG	2 cut(s)	131, 267
StyD4I	CCNGG	1 cut(s)	67
StyI	CCWWGG	1 cut(s)	130
TaaI	ACNGT	2 cut(s)	193, 530
TaqI	TCGA	1 cut(s)	285
TasI	AATT	3 cut(s)	303, 485, 537
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	2 cut(s)	255, 511
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TscAI	CASTG	2 cut(s)	196, 535
TseFI	GTSAC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	5 cut(s)	93, 97, 199, 311, 627
TspRI	CASTG	2 cut(s)	196, 535
VpaK11BI	GGWCC	3 cut(s)	62, 202, 574
XceI	RCATGY	1 cut(s)	225
XcmI	CCANNNNNNNNNTGG	1 cut(s)	366
XmaJI	CCTAGG	1 cut(s)	130
XspI	CTAG	2 cut(s)	131, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.