Rmu_sc0006838.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006838.1
OG0000247
Physical Location & Seq
Reverse (-)
13514 .. 14816
1303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006838.1_g000007.1.cds

Sequence Viewer

Length: 600 bp
atgggcattttcgggtggctactccaactgaagtacacatctgctagtgcatctccattcgtcaccgactatgtcaccatgctgatgtttatcgttgctttctttgtttactttgggtccttgactgtgaagctattagcccgtgctcccagttcagacatgggagagttcatcaacaacattaacttcttgttcggaactctggcctctgttttgctactgcttacccttgtccgagctttcgggttgtttgccctcctcttgtggacaatttatcttgtgagggaagttgcaactaagaagtcgtacaggaatgcagtttgtgatgtcttcaacaaaataaaagagatgattaatggtcactcggtggagattaatgctgtacaaccccaatccaggccacatagcaataaagggtttaggctcaatgccccccatttgtattcgaacctagatctcatcccaaaatcccaattcggctggagacccaagaacttgccttcgcgtcgttcccttccgccgccgaccaaaacatctcgctcaagatggatttgtaaaatgggtcaggagatttgcattagggttgtggaatatggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.6

Weight (kDa)

10.01

Isoelectric Point (pI)

48.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 505
AciI CCGC 2 cut(s) 518, 521
AcuI CTGAAG 1 cut(s) 50
AdeI CACNNNGTG 1 cut(s) 367
AfaI GTAC 3 cut(s) 35, 308, 384
AfiI CCNNNNNNNGG 1 cut(s) 396
AgsI TTSAA 1 cut(s) 334
AjnI CCWGG 1 cut(s) 395
AluBI AGCT 2 cut(s) 133, 239
AluI AGCT 2 cut(s) 133, 239
Alw21I GWGCWC 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 478
AoxI GGCC 2 cut(s) 204, 398
AseI ATTAAT 2 cut(s) 354, 375
AspS9I GGNCC 1 cut(s) 117
AsuHPI GGTGA 2 cut(s) 55, 67
AsuII TTCGAA 1 cut(s) 446
AvaII GGWCC 1 cut(s) 117
BbsI GAAGAC 1 cut(s) 322
Bbv12I GWGCWC 1 cut(s) 148
BccI CCATC 1 cut(s) 540
BciT130I CCWGG 1 cut(s) 397
BcoDI GTCTC 1 cut(s) 478
BfaI CTAG 2 cut(s) 45, 452
BglII AGATCT 1 cut(s) 454
BisI GCNGC 1 cut(s) 521
BlsI GCNGC 1 cut(s) 522
Bme1390I CCNGG 1 cut(s) 397
Bme18I GGWCC 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 1 cut(s) 397
BmrI ACTGGG 1 cut(s) 144
BmsI GCATC 1 cut(s) 59
BmuI ACTGGG 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 322
BpmI CTGGAG 1 cut(s) 502
Bpu14I TTCGAA 1 cut(s) 446
BpuEI CTTGAG 1 cut(s) 526
BsaBI GATNNNNATC 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 478
Bsc4I CCNNNNNNNGG 1 cut(s) 396
Bse1I ACTGG 1 cut(s) 150
Bse8I GATNNNNATC 1 cut(s) 89
BseBI CCWGG 1 cut(s) 397
BseGI GGATG 1 cut(s) 459
BseJI GATNNNNATC 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 396
BseNI ACTGG 1 cut(s) 150
BseRI GAGGAG 1 cut(s) 248
Bsh1236I CGCG 1 cut(s) 505
BshFI GGCC 2 cut(s) 206, 400
BsiHKAI GWGCWC 1 cut(s) 148
BslI CCNNNNNNNGG 1 cut(s) 396
BsmAI GTCTC 1 cut(s) 478
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 2 cut(s) 206, 400
Bso31I GGTCTC 1 cut(s) 478
Bsp119I TTCGAA 1 cut(s) 446
Bsp1286I GDGCHC 1 cut(s) 148
Bsp1407I TGTACA 1 cut(s) 382
Bsp143I GATC 1 cut(s) 454
BspACI CCGC 2 cut(s) 518, 521
BspANI GGCC 2 cut(s) 206, 400
BspFNI CGCG 1 cut(s) 505
BspLI GGNNCC 1 cut(s) 118
BspT104I TTCGAA 1 cut(s) 446
BspTNI GGTCTC 1 cut(s) 478
BsrGI TGTACA 1 cut(s) 382
BsrI ACTGG 1 cut(s) 150
BssMI GATC 1 cut(s) 454
Bst2UI CCWGG 1 cut(s) 397
Bst4CI ACNGT 1 cut(s) 127
BstAUI TGTACA 1 cut(s) 382
BstBI TTCGAA 1 cut(s) 446
BstDEI CTNAG 1 cut(s) 297
BstF5I GGATG 1 cut(s) 459
BstFNI CGCG 1 cut(s) 505
BstKTI GATC 1 cut(s) 457
BstMAI GTCTC 1 cut(s) 478
BstMBI GATC 1 cut(s) 454
BstNI CCWGG 1 cut(s) 397
BstSCI CCNGG 1 cut(s) 395
BstUI CGCG 1 cut(s) 505
BstV2I GAAGAC 1 cut(s) 322
BstX2I RGATCY 1 cut(s) 454
BstYI RGATCY 1 cut(s) 454
BsuRI GGCC 2 cut(s) 206, 400
BtsCI GGATG 1 cut(s) 459
Cfr13I GGNCC 1 cut(s) 117
CseI GACGC 1 cut(s) 494
Csp6I GTAC 3 cut(s) 34, 307, 383
CviAII CATG 2 cut(s) 79, 160
CviJI RGCY 8 cut(s) 19, 133, 140, 206, 239, 400, 424, 480
CviKI_1 RGCY 8 cut(s) 19, 133, 140, 206, 239, 400, 424, 480
CviQI GTAC 3 cut(s) 34, 307, 383
DdeI CTNAG 1 cut(s) 297
DpnI GATC 1 cut(s) 456
DpnII GATC 1 cut(s) 454
DraIII CACNNNGTG 1 cut(s) 367
EciI GGCGGA 1 cut(s) 507
Eco31I GGTCTC 1 cut(s) 478
Eco47I GGWCC 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 395
FaeI CATG 2 cut(s) 82, 163
FaiI YATR 5 cut(s) 72, 80, 161, 405, 594
FatI CATG 2 cut(s) 78, 159
Fnu4HI GCNGC 1 cut(s) 521
FokI GGATG 1 cut(s) 446
Fsp4HI GCNGC 1 cut(s) 521
FspBI CTAG 2 cut(s) 45, 452
GluI GCNGC 1 cut(s) 521
GsuI CTGGAG 1 cut(s) 502
HaeIII GGCC 2 cut(s) 206, 400
HgaI GACGC 1 cut(s) 494
Hin1II CATG 2 cut(s) 82, 163
HphI GGTGA 2 cut(s) 55, 67
Hpy166II GTNNAC 3 cut(s) 36, 109, 267
Hpy188I TCNGA 3 cut(s) 157, 197, 236
Hpy188III TCNNGA 2 cut(s) 543, 566
Hpy8I GTNNAC 3 cut(s) 36, 109, 267
Hpy99I CGWCG 1 cut(s) 510
HpyAV CCTTC 2 cut(s) 510, 524
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 4 cut(s) 50, 293, 317, 576
HpyF3I CTNAG 1 cut(s) 297
Hsp92II CATG 2 cut(s) 82, 163
Kzo9I GATC 1 cut(s) 454
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 7 cut(s) 163, 188, 295, 382, 409, 466, 551
LweI GCATC 1 cut(s) 59
MaeI CTAG 2 cut(s) 45, 452
MaeIII GTNAC 3 cut(s) 61, 73, 359
MalI GATC 1 cut(s) 456
MboI GATC 1 cut(s) 454
MboII GAAGA 1 cut(s) 322
MflI RGATCY 1 cut(s) 454
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 2 cut(s) 270, 473
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 4 cut(s) 217, 266, 269, 276
MseI TTAA 4 cut(s) 183, 354, 375, 598
MslI CAYNNNNRTG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 397
Mva1269I GAATGC 1 cut(s) 319
MvaI CCWGG 1 cut(s) 397
MvnI CGCG 1 cut(s) 505
NdeII GATC 1 cut(s) 454
NlaIII CATG 2 cut(s) 82, 163
NlaIV GGNNCC 1 cut(s) 118
NmuCI GTSAC 3 cut(s) 61, 73, 359
NspV TTCGAA 1 cut(s) 446
PctI GAATGC 1 cut(s) 319
PflFI GACNNNGTC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 522
PpuMI RGGWCCY 1 cut(s) 117
PshBI ATTAAT 2 cut(s) 354, 375
Psp5II RGGWCCY 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 395
PspGI CCWGG 1 cut(s) 395
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 1 cut(s) 117
PspPPI RGGWCCY 1 cut(s) 117
PsuI RGATCY 1 cut(s) 454
PsyI GACNNNGTC 1 cut(s) 71
RsaI GTAC 3 cut(s) 35, 308, 384
RsaNI GTAC 3 cut(s) 34, 307, 383
RseI CAYNNNNRTG 1 cut(s) 83
SaqAI TTAA 4 cut(s) 183, 354, 375, 598
SatI GCNGC 1 cut(s) 521
Sau3AI GATC 1 cut(s) 454
Sau96I GGNCC 1 cut(s) 117
ScrFI CCNGG 1 cut(s) 397
SduI GDGCHC 1 cut(s) 148
SetI ASST 3 cut(s) 135, 241, 453
SfaNI GCATC 1 cut(s) 59
SfuI TTCGAA 1 cut(s) 446
SinI GGWCC 1 cut(s) 117
SmiMI CAYNNNNRTG 1 cut(s) 83
SmlI CTYRAG 1 cut(s) 541
SmoI CTYRAG 1 cut(s) 541
Sse9I AATT 2 cut(s) 270, 473
SsiI CCGC 2 cut(s) 518, 521
SspMI CTAG 2 cut(s) 45, 452
StyD4I CCNGG 1 cut(s) 395
TaaI ACNGT 1 cut(s) 127
TaqI TCGA 1 cut(s) 446
TasI AATT 2 cut(s) 270, 473
TatI WGTACW 2 cut(s) 33, 382
TauI GCSGC 1 cut(s) 523
Tru1I TTAA 4 cut(s) 183, 354, 375, 598
Tru9I TTAA 4 cut(s) 183, 354, 375, 598
TseFI GTSAC 3 cut(s) 61, 73, 359
Tsp45I GTSAC 3 cut(s) 61, 73, 359
TspDTI ATGAA 1 cut(s) 160
Tth111I GACNNNGTC 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 117
VspI ATTAAT 2 cut(s) 354, 375
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
XspI CTAG 2 cut(s) 45, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.