Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Reverse (-)

36058576 .. 36060631

Gene Structure 2056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g47651.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTATCTGATGATCACTGCAATTGGTTCGTACCAACTGTCTAAAACACTATGCAAAAGAGCAGTTGCAGCTCTTATTCTAGCTTTGGGTGAATTCCAAGTGAAACTGATCTCACTAAATGCCCGTTTGATGGGATCAGTTGCTGGACTCGGTCGTGCTTATGAGAAATTGAAGGATTTGATCAAGAGGAGCCGCTATTCGACAGAGCATGATGAAACCAGTAACCTCAGCAAGGAACTACCGGTCACCAGCACAAGGAGGGAGGCTGCTCTTCAGGGATACTCTATAGTGAAATTACATACATGCATAATTTCTCTCATCGGCGTCTTGGGATTCTGCCTGCAACTCAAGTTTCCCAATGTGTCTCCATATGCGACGGTCTACGGCTCTCAGCGGATGAACGTATTCATCATTGTGACATGCATTTACATCCTCTCTTTGATTGTTCTGGCAATCCTAGCTGATAACAATGATGCAGATTTGGAAGATCTGATGATCAAAATCACCATCTTACTTGGAAGCCTGTCCCTGATTTTAGAGTTACTCGTCCTTATTGAACCTTTCGGAATGATTCTACTCTTCTTCTGGTGCATCTGCCTTGTATGGTTCGTGAGCAAGTCTTACCAGTCTCTGAAAACACTCTTCCGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

218

Amino Acids

24.31

Weight (kDa)

9.12

Isoelectric Point (pI)

34.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	381
AciI	CCGC	2 cut(s)	193, 394
AclWI	GGATC	1 cut(s)	142
AcsI	RAATTY	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	257
AcyI	GRCGYC	1 cut(s)	324
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	3 cut(s)	130, 232, 255
AgeI	ACCGGT	1 cut(s)	241
AgsI	TTSAA	2 cut(s)	172, 557
AluBI	AGCT	3 cut(s)	71, 83, 461
AluI	AGCT	3 cut(s)	71, 83, 461
Alw26I	GTCTC	2 cut(s)	369, 633
AlwI	GGATC	1 cut(s)	142
AlwNI	CAGNNNCTG	2 cut(s)	143, 631
ApeKI	GCWGC	2 cut(s)	68, 266
ApoI	RAATTY	1 cut(s)	92
AsiGI	ACCGGT	1 cut(s)	241
Asp700I	GAANNNNTTC	1 cut(s)	404
AsuHPI	GGTGA	3 cut(s)	101, 238, 496
BbvCI	CCTCAGC	1 cut(s)	227
BbvI	GCAGC	2 cut(s)	80, 253
BccI	CCATC	2 cut(s)	124, 515
BceAI	ACGGC	1 cut(s)	400
BcgI	CGANNNNNNTGC	2 cut(s)	9, 43
BciVI	GTATCC	1 cut(s)	272
BclI	TGATCA	3 cut(s)	12, 180, 495
BcoDI	GTCTC	2 cut(s)	369, 633
BfaI	CTAG	2 cut(s)	80, 458
BfmI	CTRYAG	1 cut(s)	285
BfuI	GTATCC	1 cut(s)	272
BglII	AGATCT	1 cut(s)	487
BisI	GCNGC	3 cut(s)	69, 193, 267
BlsI	GCNGC	3 cut(s)	70, 194, 268
BmiI	GGNNCC	1 cut(s)	191
BmsI	GCATC	2 cut(s)	463, 600
Bpu10I	CCTNAGC	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	332
BsaBI	GATNNNNATC	1 cut(s)	500
BsaHI	GRCGYC	1 cut(s)	324
BsaWI	WCCGGW	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 232, 255
Bse118I	RCCGGY	1 cut(s)	241
Bse1I	ACTGG	2 cut(s)	219, 625
Bse8I	GATNNNNATC	1 cut(s)	500
BseGI	GGATG	2 cut(s)	402, 429
BseJI	GATNNNNATC	1 cut(s)	500
BseLI	CCNNNNNNNGG	3 cut(s)	130, 232, 255
BseMII	CTCAG	2 cut(s)	241, 404
BseNI	ACTGG	2 cut(s)	219, 625
BseRI	GAGGAG	1 cut(s)	202
BseXI	GCAGC	2 cut(s)	80, 253
Bsh1285I	CGRYCG	1 cut(s)	154
BshTI	ACCGGT	1 cut(s)	241
BsiEI	CGRYCG	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	242
BslFI	GGGAC	1 cut(s)	511
BslI	CCNNNNNNNGG	3 cut(s)	130, 232, 255
BsmAI	GTCTC	2 cut(s)	369, 633
BsmFI	GGGAC	1 cut(s)	511
Bsp143I	GATC	6 cut(s)	12, 108, 134, 180, 487, 495
BspACI	CCGC	2 cut(s)	193, 394
BspCNI	CTCAG	2 cut(s)	240, 403
BspLI	GGNNCC	1 cut(s)	191
BspPI	GGATC	1 cut(s)	142
BspQI	GCTCTTC	1 cut(s)	276
BsrFI	RCCGGY	1 cut(s)	241
BsrI	ACTGG	2 cut(s)	219, 625
BssAI	RCCGGY	1 cut(s)	241
BssMI	GATC	6 cut(s)	12, 108, 134, 180, 487, 495
BssNI	GRCGYC	1 cut(s)	324
Bst4CI	ACNGT	2 cut(s)	39, 379
Bst6I	CTCTTC	3 cut(s)	276, 584, 647
BstACI	GRCGYC	1 cut(s)	324
BstC8I	GCNNGC	1 cut(s)	341
BstDEI	CTNAG	2 cut(s)	227, 390
BstEII	GGTNACC	1 cut(s)	244
BstENI	CCTNNNNNAGG	1 cut(s)	230
BstF5I	GGATG	2 cut(s)	402, 429
BstKTI	GATC	6 cut(s)	15, 111, 137, 183, 490, 498
BstMAI	GTCTC	2 cut(s)	369, 633
BstMBI	GATC	6 cut(s)	12, 108, 134, 180, 487, 495
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 458
BstNSI	RCATGY	2 cut(s)	306, 423
BstPI	GGTNACC	1 cut(s)	244
BstSFI	CTRYAG	1 cut(s)	285
BstV1I	GCAGC	2 cut(s)	80, 253
BstX2I	RGATCY	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	487
BsuI	GTATCC	1 cut(s)	272
BtsCI	GGATG	2 cut(s)	402, 429
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	1 cut(s)	15
Cac8I	GCNNGC	1 cut(s)	341
CaiI	CAGNNNCTG	2 cut(s)	143, 631
Cfr10I	RCCGGY	1 cut(s)	241
CseI	GACGC	1 cut(s)	313
Csp6I	GTAC	1 cut(s)	31
CspAI	ACCGGT	1 cut(s)	241
CviAII	CATG	3 cut(s)	209, 303, 420
CviJI	RGCY	7 cut(s)	71, 83, 192, 266, 387, 461, 522
CviKI_1	RGCY	7 cut(s)	71, 83, 192, 266, 387, 461, 522
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	2 cut(s)	227, 390
DpnI	GATC	6 cut(s)	14, 110, 136, 182, 489, 497
DpnII	GATC	6 cut(s)	12, 108, 134, 180, 487, 495
Eam1104I	CTCTTC	3 cut(s)	276, 584, 647
EarI	CTCTTC	3 cut(s)	276, 584, 647
Eco57I	CTGAAG	1 cut(s)	257
Eco91I	GGTNACC	1 cut(s)	244
EcoNI	CCTNNNNNAGG	1 cut(s)	230
EcoO65I	GGTNACC	1 cut(s)	244
EcoRI	GAATTC	1 cut(s)	92
EcoT22I	ATGCAT	2 cut(s)	308, 425
FaeI	CATG	3 cut(s)	212, 306, 423
FaqI	GGGAC	1 cut(s)	511
FatI	CATG	3 cut(s)	208, 302, 419
FauNDI	CATATG	1 cut(s)	370
FbaI	TGATCA	3 cut(s)	12, 180, 495
FblI	GTMKAC	1 cut(s)	381
Fnu4HI	GCNGC	3 cut(s)	69, 193, 267
FokI	GGATG	2 cut(s)	409, 416
Fsp4HI	GCNGC	3 cut(s)	69, 193, 267
FspBI	CTAG	2 cut(s)	80, 458
GluI	GCNGC	3 cut(s)	69, 193, 267
HapII	CCGG	1 cut(s)	242
HgaI	GACGC	1 cut(s)	313
Hin1I	GRCGYC	1 cut(s)	324
Hin1II	CATG	3 cut(s)	212, 306, 423
HinfI	GANTC	3 cut(s)	147, 333, 571
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	3 cut(s)	101, 238, 496
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	5 cut(s)	9, 492, 566, 633, 647
Hpy188III	TCNNGA	2 cut(s)	184, 610
Hpy8I	GTNNAC	1 cut(s)	382
Hpy99I	CGWCG	1 cut(s)	379
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	2 cut(s)	39, 379
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	8 cut(s)	20, 54, 68, 306, 343, 423, 476, 591
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 458
HpyF3I	CTNAG	2 cut(s)	227, 390
HpySE526I	ACGT	1 cut(s)	402
Hsp92I	GRCGYC	1 cut(s)	324
Hsp92II	CATG	3 cut(s)	212, 306, 423
Ksp22I	TGATCA	3 cut(s)	12, 180, 495
Kzo9I	GATC	6 cut(s)	12, 108, 134, 180, 487, 495
LguI	GCTCTTC	1 cut(s)	276
LmnI	GCTCC	1 cut(s)	189
Lsp1109I	GCAGC	2 cut(s)	80, 253
LweI	GCATC	2 cut(s)	463, 600
MaeI	CTAG	2 cut(s)	80, 458
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	4 cut(s)	221, 244, 415, 540
MalI	GATC	6 cut(s)	14, 110, 136, 182, 489, 497
MboI	GATC	6 cut(s)	12, 108, 134, 180, 487, 495
MboII	GAAGA	5 cut(s)	263, 497, 571, 574, 634
MfeI	CAATTG	1 cut(s)	21
MflI	RGATCY	1 cut(s)	487
MluCI	AATT	5 cut(s)	21, 92, 167, 293, 309
MlyI	GAGTC	1 cut(s)	141
MnlI	CCTC	5 cut(s)	180, 236, 252, 256, 443
Mph1103I	ATGCAT	2 cut(s)	308, 425
MroXI	GAANNNNTTC	1 cut(s)	404
MslI	CAYNNNNRTG	1 cut(s)	413
MspA1I	CMGCKG	1 cut(s)	394
MspI	CCGG	1 cut(s)	242
MunI	CAATTG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	68, 458
NdeI	CATATG	1 cut(s)	370
NdeII	GATC	6 cut(s)	12, 108, 134, 180, 487, 495
NlaIII	CATG	3 cut(s)	212, 306, 423
NlaIV	GGNNCC	1 cut(s)	191
NmuCI	GTSAC	2 cut(s)	244, 415
NsiI	ATGCAT	2 cut(s)	308, 425
NspI	RCATGY	2 cut(s)	306, 423
PciSI	GCTCTTC	1 cut(s)	276
PdmI	GAANNNNTTC	1 cut(s)	404
PfeI	GAWTC	2 cut(s)	333, 571
PflFI	GACNNNGTC	1 cut(s)	150
PinAI	ACCGGT	1 cut(s)	241
PkrI	GCNGC	3 cut(s)	70, 194, 268
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
PspEI	GGTNACC	1 cut(s)	244
PspN4I	GGNNCC	1 cut(s)	191
PstNI	CAGNNNCTG	2 cut(s)	143, 631
PsuI	RGATCY	1 cut(s)	487
PsyI	GACNNNGTC	1 cut(s)	150
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	413
SapI	GCTCTTC	1 cut(s)	276
SatI	GCNGC	3 cut(s)	69, 193, 267
Sau3AI	GATC	6 cut(s)	12, 108, 134, 180, 487, 495
SchI	GAGTC	1 cut(s)	141
SetI	ASST	6 cut(s)	73, 85, 228, 405, 463, 562
SfaNI	GCATC	2 cut(s)	463, 600
SfcI	CTRYAG	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	413
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
Sse9I	AATT	5 cut(s)	21, 92, 167, 293, 309
SsiI	CCGC	2 cut(s)	193, 394
SspMI	CTAG	2 cut(s)	80, 458
TaaI	ACNGT	2 cut(s)	39, 379
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	1 cut(s)	200
TaqII	GACCGA	1 cut(s)	140
TasI	AATT	5 cut(s)	21, 92, 167, 293, 309
TauI	GCSGC	1 cut(s)	195
TfiI	GAWTC	2 cut(s)	333, 571
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	2 cut(s)	244, 415
TseI	GCWGC	2 cut(s)	68, 266
Tsp45I	GTSAC	2 cut(s)	244, 415
TspDTI	ATGAA	3 cut(s)	228, 397, 413
TspRI	CASTG	1 cut(s)	22
Tth111I	GACNNNGTC	1 cut(s)	150
XagI	CCTNNNNNAGG	1 cut(s)	230
XapI	RAATTY	1 cut(s)	92
XceI	RCATGY	2 cut(s)	306, 423
XmiI	GTMKAC	1 cut(s)	381
XmnI	GAANNNNTTC	1 cut(s)	404
XspI	CTAG	2 cut(s)	80, 458
Zsp2I	ATGCAT	2 cut(s)	308, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.