Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Reverse (-)

36118697 .. 36120589

Gene Structure 1893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g47731.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGAAACGACGACAGCACCTCTCTGGCTCTCCCTACCTTTCCCGCGTTCCCAGTTCGCCTACCAGAAATGAGGAGCCCCCTTTCTTCCATTTGAACCAAAACGAACACCGGAGAGGAAAACTGGAGGAAGCTGTAATCGGAACTAATGCCGGAAATGAGCTCTCAGCCTCCAACACAACAGGGGAGGGTGCTCGTCAGGGATATTCTGTAGTGGTGATGCATACCTGCATAATATCTTTCATCACCATCTTCGGCGTAGGCCTCCAACTCAAGTTCCCAAATGTTTCTCCATACGAGACGGCCTGCGGCACTCTGATGATGAACCTCTTTATTATTGAGATATGCTTTTACCTCGCCTCTTTAGTTGTGATGGCAATCCAAGCTGCTAGCAATAATAGAGTCCTGGAAGATCTGACGAACAAGATTGGCCTCTTGCTTGGAACTCTGTCCCTGATTTTAGAGTTGCTCGTTCTTATTTCACCCTTTGGATGGATCGTACTGTTCTTCTGGAGCATCTGCCTTCTATGCTTCCTGAGTAAGTCTTCTCAGTCTCTGAATACACTCTCCCAAAGTGCAGTTGTGCTTCTTGTTCAAGGCTTGGGAGAATTTAGACAGACGCTGATAGATTGGTCTCGCCGCATGATGGTTAGAAATGATGAAGTGGACAATATGAGCATCAGAAACAACGGGGGCGCTACTGAGCTTCGGACCCAGAATCTCAACATCAGCAATGACAGGCAGGCTGCAGAGCATCAATCCCAGGACCAGAATCACACCAACGCGGCAGAGCATGTAATTTCAATACCTGATGACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

273

Amino Acids

30.24

Weight (kDa)

5.97

Isoelectric Point (pI)

52.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	233
AccII	CGCG	2 cut(s)	45, 782
AciI	CCGC	4 cut(s)	43, 306, 637, 782
AclWI	GGATC	1 cut(s)	500
AcsI	RAATTY	1 cut(s)	605
AfaI	GTAC	1 cut(s)	498
AfiI	CCNNNNNNNGG	2 cut(s)	489, 643
AgsI	TTSAA	3 cut(s)	94, 593, 801
AjnI	CCWGG	2 cut(s)	402, 759
AluBI	AGCT	4 cut(s)	131, 160, 383, 703
AluI	AGCT	4 cut(s)	131, 160, 383, 703
Alw21I	GWGCWC	2 cut(s)	162, 193
Alw26I	GTCTC	3 cut(s)	290, 555, 636
AlwI	GGATC	1 cut(s)	500
AlwNI	CAGNNNCTG	2 cut(s)	553, 619
AoxI	GGCC	3 cut(s)	259, 300, 427
ApeKI	GCWGC	2 cut(s)	383, 743
ApoI	RAATTY	1 cut(s)	605
AspLEI	GCGC	1 cut(s)	695
AspS9I	GGNCC	2 cut(s)	708, 763
AsuHPI	GGTGA	3 cut(s)	226, 235, 471
AsuNHI	GCTAGC	1 cut(s)	386
AvaII	GGWCC	2 cut(s)	708, 763
BanII	GRGCYC	2 cut(s)	78, 162
BbsI	GAAGAC	1 cut(s)	534
Bbv12I	GWGCWC	2 cut(s)	162, 193
BbvI	GCAGC	2 cut(s)	370, 730
BccI	CCATC	4 cut(s)	254, 364, 483, 637
BceAI	ACGGC	1 cut(s)	315
BciT130I	CCWGG	2 cut(s)	404, 761
BcoDI	GTCTC	3 cut(s)	290, 555, 636
BfaI	CTAG	1 cut(s)	387
BfmI	CTRYAG	2 cut(s)	207, 744
BfoI	RGCGCY	1 cut(s)	696
BfuAI	ACCTGC	1 cut(s)	233
BglII	AGATCT	1 cut(s)	409
BisI	GCNGC	5 cut(s)	307, 384, 637, 744, 783
BlsI	GCNGC	5 cut(s)	308, 385, 638, 745, 784
Bme1390I	CCNGG	2 cut(s)	404, 761
Bme18I	GGWCC	2 cut(s)	708, 763
BmgT120I	GGNCC	2 cut(s)	708, 763
BmiI	GGNNCC	2 cut(s)	75, 710
BmrFI	CCNGG	2 cut(s)	404, 761
BmrI	ACTGGG	1 cut(s)	45
BmsI	GCATC	4 cut(s)	207, 522, 684, 760
BmtI	GCTAGC	1 cut(s)	390
BmuI	ACTGGG	1 cut(s)	45
BpiI	GAAGAC	1 cut(s)	534
BpmI	CTGGAG	2 cut(s)	143, 529
BpuEI	CTTGAG	1 cut(s)	254
BsaBI	GATNNNNATC	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	636
BsaJI	CCNNGG	1 cut(s)	759
BsaWI	WCCGGW	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	2 cut(s)	489, 643
Bse1I	ACTGG	2 cut(s)	51, 126
Bse3DI	GCAATG	1 cut(s)	736
Bse8I	GATNNNNATC	1 cut(s)	374
BseBI	CCWGG	2 cut(s)	404, 761
BseDI	CCNNGG	1 cut(s)	759
BseGI	GGATG	1 cut(s)	494
BseJI	GATNNNNATC	1 cut(s)	374
BseLI	CCNNNNNNNGG	2 cut(s)	489, 643
BseMI	GCAATG	1 cut(s)	736
BseMII	CTCAG	4 cut(s)	177, 524, 560, 690
BseNI	ACTGG	2 cut(s)	51, 126
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	2 cut(s)	370, 730
BsgI	GTGCAG	1 cut(s)	594
Bsh1236I	CGCG	2 cut(s)	45, 782
BshFI	GGCC	3 cut(s)	261, 302, 429
BsiHKAI	GWGCWC	2 cut(s)	162, 193
BsiSI	CCGG	2 cut(s)	109, 150
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	2 cut(s)	489, 643
BsmAI	GTCTC	3 cut(s)	290, 555, 636
BsmBI	CGTCTC	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	433
BsnI	GGCC	3 cut(s)	261, 302, 429
Bso31I	GGTCTC	1 cut(s)	636
Bsp1286I	GDGCHC	3 cut(s)	78, 162, 193
Bsp143I	GATC	2 cut(s)	409, 492
BspACI	CCGC	4 cut(s)	43, 306, 637, 782
BspANI	GGCC	3 cut(s)	261, 302, 429
BspCNI	CTCAG	4 cut(s)	176, 525, 559, 691
BspFNI	CGCG	2 cut(s)	45, 782
BspLI	GGNNCC	2 cut(s)	75, 710
BspMAI	CTGCAG	1 cut(s)	748
BspMI	ACCTGC	1 cut(s)	233
BspOI	GCTAGC	1 cut(s)	390
BspPI	GGATC	1 cut(s)	500
BspTNI	GGTCTC	1 cut(s)	636
BsrDI	GCAATG	1 cut(s)	736
BsrI	ACTGG	2 cut(s)	51, 126
BssECI	CCNNGG	1 cut(s)	759
BssMI	GATC	2 cut(s)	409, 492
Bst2UI	CCWGG	2 cut(s)	404, 761
Bst4CI	ACNGT	1 cut(s)	501
BstC8I	GCNNGC	3 cut(s)	304, 388, 741
BstDEI	CTNAG	4 cut(s)	163, 533, 546, 699
BstF5I	GGATG	1 cut(s)	494
BstFNI	CGCG	2 cut(s)	45, 782
BstH2I	RGCGCY	1 cut(s)	696
BstHHI	GCGC	1 cut(s)	695
BstKTI	GATC	2 cut(s)	412, 495
BstMAI	GTCTC	3 cut(s)	290, 555, 636
BstMBI	GATC	2 cut(s)	409, 492
BstMWI	GCNNNNNNNGC	2 cut(s)	380, 525
BstNI	CCWGG	2 cut(s)	404, 761
BstNSI	RCATGY	1 cut(s)	794
BstSCI	CCNGG	2 cut(s)	402, 759
BstSFI	CTRYAG	2 cut(s)	207, 744
BstUI	CGCG	2 cut(s)	45, 782
BstV1I	GCAGC	2 cut(s)	370, 730
BstV2I	GAAGAC	1 cut(s)	534
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
BsuRI	GGCC	3 cut(s)	261, 302, 429
BtsCI	GGATG	1 cut(s)	494
BveI	ACCTGC	1 cut(s)	233
Cac8I	GCNNGC	3 cut(s)	304, 388, 741
CaiI	CAGNNNCTG	2 cut(s)	553, 619
CfoI	GCGC	1 cut(s)	695
Cfr13I	GGNCC	2 cut(s)	708, 763
CseI	GACGC	1 cut(s)	625
Csp6I	GTAC	1 cut(s)	497
CviAII	CATG	2 cut(s)	640, 791
CviQI	GTAC	1 cut(s)	497
DdeI	CTNAG	4 cut(s)	163, 533, 546, 699
DpnI	GATC	2 cut(s)	411, 494
DpnII	GATC	2 cut(s)	409, 492
Ecl136II	GAGCTC	1 cut(s)	160
Eco147I	AGGCCT	1 cut(s)	261
Eco24I	GRGCYC	2 cut(s)	78, 162
Eco31I	GGTCTC	1 cut(s)	636
Eco47I	GGWCC	2 cut(s)	708, 763
Eco53kI	GAGCTC	1 cut(s)	160
EcoICRI	GAGCTC	1 cut(s)	160
EcoRII	CCWGG	2 cut(s)	402, 759
EcoT22I	ATGCAT	1 cut(s)	222
EcoT38I	GRGCYC	2 cut(s)	78, 162
Esp3I	CGTCTC	1 cut(s)	290
FaeI	CATG	2 cut(s)	643, 794
FaiI	YATR	8 cut(s)	222, 230, 292, 343, 526, 641, 671, 792
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	2 cut(s)	639, 790
FauI	CCCGC	1 cut(s)	50
Fnu4HI	GCNGC	5 cut(s)	307, 384, 637, 744, 783
FokI	GGATG	1 cut(s)	501
FriOI	GRGCYC	2 cut(s)	78, 162
Fsp4HI	GCNGC	5 cut(s)	307, 384, 637, 744, 783
FspBI	CTAG	1 cut(s)	387
GlaI	GCGC	1 cut(s)	694
GluI	GCNGC	5 cut(s)	307, 384, 637, 744, 783
GsuI	CTGGAG	2 cut(s)	143, 529
HaeII	RGCGCY	1 cut(s)	696
HaeIII	GGCC	3 cut(s)	261, 302, 429
HapII	CCGG	2 cut(s)	109, 150
HgaI	GACGC	1 cut(s)	625
HhaI	GCGC	1 cut(s)	695
Hin1II	CATG	2 cut(s)	643, 794
Hin6I	GCGC	1 cut(s)	693
HinP1I	GCGC	1 cut(s)	693
HinfI	GANTC	4 cut(s)	399, 715, 769, 812
HpaII	CCGG	2 cut(s)	109, 150
HphI	GGTGA	3 cut(s)	226, 235, 471
Hpy166II	GTNNAC	1 cut(s)	664
Hpy188I	TCNGA	6 cut(s)	140, 315, 414, 555, 680, 708
Hpy188III	TCNNGA	3 cut(s)	508, 532, 816
Hpy8I	GTNNAC	1 cut(s)	664
Hpy99I	CGWCG	1 cut(s)	12
HpyAV	CCTTC	1 cut(s)	530
HpyCH4III	ACNGT	1 cut(s)	501
HpyCH4V	TGCA	4 cut(s)	220, 228, 575, 746
HpyF10VI	GCNNNNNNNGC	2 cut(s)	380, 525
HpyF3I	CTNAG	4 cut(s)	163, 533, 546, 699
Hsp92II	CATG	2 cut(s)	643, 794
HspAI	GCGC	1 cut(s)	693
Kzo9I	GATC	2 cut(s)	409, 492
LmnI	GCTCC	2 cut(s)	73, 510
Lsp1109I	GCAGC	2 cut(s)	370, 730
LweI	GCATC	4 cut(s)	207, 522, 684, 760
MaeI	CTAG	1 cut(s)	387
MalI	GATC	2 cut(s)	411, 494
MboI	GATC	2 cut(s)	409, 492
MboII	GAAGA	5 cut(s)	76, 241, 419, 496, 534
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	3 cut(s)	78, 162, 193
MluCI	AATT	2 cut(s)	605, 795
MlyI	GAGTC	2 cut(s)	408, 806
MmeI	TCCRAC	2 cut(s)	195, 289
Mph1103I	ATGCAT	1 cut(s)	222
MslI	CAYNNNNRTG	1 cut(s)	314
MspI	CCGG	2 cut(s)	109, 150
MspR9I	CCNGG	2 cut(s)	404, 761
MvaI	CCWGG	2 cut(s)	404, 761
MvnI	CGCG	2 cut(s)	45, 782
MwoI	GCNNNNNNNGC	2 cut(s)	380, 525
NdeII	GATC	2 cut(s)	409, 492
NheI	GCTAGC	1 cut(s)	386
NlaIII	CATG	2 cut(s)	643, 794
NlaIV	GGNNCC	2 cut(s)	75, 710
NsiI	ATGCAT	1 cut(s)	222
NspI	RCATGY	1 cut(s)	794
PceI	AGGCCT	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	715, 769
PfoI	TCCNGGA	1 cut(s)	402
PkrI	GCNGC	5 cut(s)	308, 385, 638, 745, 784
PleI	GAGTC	2 cut(s)	407, 806
PpsI	GAGTC	2 cut(s)	407, 806
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	2 cut(s)	402, 759
PspGI	CCWGG	2 cut(s)	402, 759
PspN4I	GGNNCC	2 cut(s)	75, 710
PspPI	GGNCC	2 cut(s)	708, 763
PstI	CTGCAG	1 cut(s)	748
PstNI	CAGNNNCTG	2 cut(s)	553, 619
PsuI	RGATCY	1 cut(s)	409
RsaI	GTAC	1 cut(s)	498
RsaNI	GTAC	1 cut(s)	497
RseI	CAYNNNNRTG	1 cut(s)	314
SacI	GAGCTC	1 cut(s)	162
SatI	GCNGC	5 cut(s)	307, 384, 637, 744, 783
Sau3AI	GATC	2 cut(s)	409, 492
Sau96I	GGNCC	2 cut(s)	708, 763
SchI	GAGTC	2 cut(s)	408, 806
ScrFI	CCNGG	2 cut(s)	404, 761
SduI	GDGCHC	3 cut(s)	78, 162, 193
SfaNI	GCATC	4 cut(s)	207, 522, 684, 760
SfcI	CTRYAG	2 cut(s)	207, 744
SinI	GGWCC	2 cut(s)	708, 763
SmiMI	CAYNNNNRTG	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	2 cut(s)	605, 795
SseBI	AGGCCT	1 cut(s)	261
SsiI	CCGC	4 cut(s)	43, 306, 637, 782
SspMI	CTAG	1 cut(s)	387
SstI	GAGCTC	1 cut(s)	162
StuI	AGGCCT	1 cut(s)	261
StyD4I	CCNGG	2 cut(s)	402, 759
TaaI	ACNGT	1 cut(s)	501
TasI	AATT	2 cut(s)	605, 795
TauI	GCSGC	3 cut(s)	309, 639, 785
TfiI	GAWTC	2 cut(s)	715, 769
TseI	GCWGC	2 cut(s)	383, 743
TspDTI	ATGAA	4 cut(s)	17, 229, 335, 672
VpaK11BI	GGWCC	2 cut(s)	708, 763
XapI	RAATTY	1 cut(s)	605
XceI	RCATGY	1 cut(s)	794
XspI	CTAG	1 cut(s)	387
Zsp2I	ATGCAT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.