Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001432.1

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Forward (+)

16317 .. 16865

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001432.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atgatattgctggcactgcatgcattcatgttttctctcatcggagtcttaggcgtctacctccaactcaagtttctgaatgtgtctacatatgcgaccacctacggcacggtgatgatggacctcatcattattgagacatgcttttacatcgtctctttagttgtgatgggaatcctagctgctcgcaacaatacagatttcgaagatctgatgaacaatattagcctcttacttggaagtctgtccctaattttagagttgctagtccttatttcaccttttgggtggatcgcactcttcgtatggagcatctgccttttatgcttcctgagtacgtcttgccggtctctgaacacactctaccaaagtgcagtagcacatcttgttcaagactttggagaattgaaacagaagctggttgatctgaatcgccgcttgatggacagtaacgcaattgcagcacttcatggttcctatcagacattgaaggacctgatcatcaggaatgacgggcgcatgacagagcatgaagcccagatgccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

182

Amino Acids

20.42

Weight (kDa)

5.43

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	57, 86
AciI	CCGC	1 cut(s)	436
AclWI	GGATC	1 cut(s)	299
AcyI	GRCGYC	1 cut(s)	54
AfaI	GTAC	1 cut(s)	337
AfiI	CCNNNNNNNGG	1 cut(s)	442
AgsI	TTSAA	3 cut(s)	392, 409, 490
AjuI	GAANNNNNNNTTGG	2 cut(s)	57, 89
AluBI	AGCT	2 cut(s)	182, 418
AluI	AGCT	2 cut(s)	182, 418
Alw26I	GTCTC	3 cut(s)	131, 160, 354
AlwI	GGATC	1 cut(s)	299
AlwNI	CAGNNNCTG	1 cut(s)	418
ApeKI	GCWGC	2 cut(s)	182, 461
AspLEI	GCGC	1 cut(s)	519
AspS9I	GGNCC	2 cut(s)	121, 493
AsuHPI	GGTGA	2 cut(s)	124, 270
AsuII	TTCGAA	1 cut(s)	204
AvaII	GGWCC	2 cut(s)	121, 493
BbvI	GCAGC	2 cut(s)	169, 473
BccI	CCATC	3 cut(s)	112, 163, 436
BceAI	ACGGC	1 cut(s)	121
BclI	TGATCA	1 cut(s)	498
BcoDI	GTCTC	3 cut(s)	131, 160, 354
BfaI	CTAG	3 cut(s)	179, 266, 547
BglII	AGATCT	1 cut(s)	208
BisI	GCNGC	3 cut(s)	183, 436, 462
BlsI	GCNGC	3 cut(s)	184, 437, 463
Bme18I	GGWCC	2 cut(s)	121, 493
BmgT120I	GGNCC	2 cut(s)	121, 493
BmiI	GGNNCC	1 cut(s)	475
BmsI	GCATC	2 cut(s)	321, 531
Bpu14I	TTCGAA	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	53
BsaBI	GATNNNNATC	2 cut(s)	173, 429
BsaHI	GRCGYC	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	1 cut(s)	442
Bse118I	RCCGGY	1 cut(s)	345
Bse8I	GATNNNNATC	2 cut(s)	173, 429
BseJI	GATNNNNATC	2 cut(s)	173, 429
BseLI	CCNNNNNNNGG	1 cut(s)	442
BseMII	CTCAG	1 cut(s)	323
BseXI	GCAGC	2 cut(s)	169, 473
BsgI	GTGCAG	1 cut(s)	393
BsiSI	CCGG	1 cut(s)	346
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	1 cut(s)	442
BsmAI	GTCTC	3 cut(s)	131, 160, 354
BsmBI	CGTCTC	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	232
BsmI	GAATGC	1 cut(s)	23
Bso31I	GGTCTC	1 cut(s)	354
Bsp119I	TTCGAA	1 cut(s)	204
Bsp143I	GATC	4 cut(s)	208, 291, 424, 498
BspACI	CCGC	1 cut(s)	436
BspCNI	CTCAG	1 cut(s)	324
BspLI	GGNNCC	1 cut(s)	475
BspPI	GGATC	1 cut(s)	299
BspT104I	TTCGAA	1 cut(s)	204
BspTNI	GGTCTC	1 cut(s)	354
BsrFI	RCCGGY	1 cut(s)	345
BssAI	RCCGGY	1 cut(s)	345
BssMI	GATC	4 cut(s)	208, 291, 424, 498
BssNI	GRCGYC	1 cut(s)	54
Bst4CI	ACNGT	2 cut(s)	112, 449
Bst6I	CTCTTC	1 cut(s)	305
BstACI	GRCGYC	1 cut(s)	54
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstBI	TTCGAA	1 cut(s)	204
BstC8I	GCNNGC	3 cut(s)	12, 21, 187
BstDEI	CTNAG	2 cut(s)	49, 332
BstHHI	GCGC	1 cut(s)	519
BstKTI	GATC	4 cut(s)	211, 294, 427, 501
BstMAI	GTCTC	3 cut(s)	131, 160, 354
BstMBI	GATC	4 cut(s)	208, 291, 424, 498
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 20, 324, 461
BstNSI	RCATGY	2 cut(s)	23, 144
BstV1I	GCAGC	2 cut(s)	169, 473
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BtsI	GCAGTG	1 cut(s)	14
BtsIMutI	CAGTG	1 cut(s)	14
Cac8I	GCNNGC	3 cut(s)	12, 21, 187
CaiI	CAGNNNCTG	1 cut(s)	418
CfoI	GCGC	1 cut(s)	519
Cfr10I	RCCGGY	1 cut(s)	345
Cfr13I	GGNCC	2 cut(s)	121, 493
CseI	GACGC	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	336
CviAII	CATG	6 cut(s)	20, 28, 141, 470, 520, 530
CviJI	RGCY	4 cut(s)	182, 228, 418, 536
CviKI_1	RGCY	4 cut(s)	182, 228, 418, 536
CviQI	GTAC	1 cut(s)	336
DdeI	CTNAG	2 cut(s)	49, 332
DpnI	GATC	4 cut(s)	210, 293, 426, 500
DpnII	GATC	4 cut(s)	208, 291, 424, 498
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
Eco31I	GGTCTC	1 cut(s)	354
Eco47I	GGWCC	2 cut(s)	121, 493
EcoO109I	RGGNCCY	1 cut(s)	493
EcoT22I	ATGCAT	1 cut(s)	25
Esp3I	CGTCTC	1 cut(s)	160
FaeI	CATG	6 cut(s)	23, 31, 144, 473, 523, 533
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	6 cut(s)	19, 27, 140, 469, 519, 529
FauNDI	CATATG	1 cut(s)	91
FbaI	TGATCA	1 cut(s)	498
FblI	GTMKAC	2 cut(s)	57, 86
Fnu4HI	GCNGC	3 cut(s)	183, 436, 462
Fsp4HI	GCNGC	3 cut(s)	183, 436, 462
FspBI	CTAG	3 cut(s)	179, 266, 547
GlaI	GCGC	1 cut(s)	518
GluI	GCNGC	3 cut(s)	183, 436, 462
HapII	CCGG	1 cut(s)	346
HgaI	GACGC	1 cut(s)	43
HhaI	GCGC	1 cut(s)	519
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	6 cut(s)	23, 31, 144, 473, 523, 533
Hin6I	GCGC	1 cut(s)	517
HinP1I	GCGC	1 cut(s)	517
HinfI	GANTC	3 cut(s)	45, 174, 430
HpaII	CCGG	1 cut(s)	346
HphI	GGTGA	2 cut(s)	124, 270
Hpy166II	GTNNAC	2 cut(s)	58, 87
Hpy188I	TCNGA	6 cut(s)	44, 78, 213, 354, 429, 483
Hpy188III	TCNNGA	3 cut(s)	331, 392, 505
Hpy8I	GTNNAC	2 cut(s)	58, 87
HpyAV	CCTTC	1 cut(s)	484
HpyCH4III	ACNGT	2 cut(s)	112, 449
HpyCH4IV	ACGT	1 cut(s)	338
HpyCH4V	TGCA	4 cut(s)	19, 23, 374, 461
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 20, 324, 461
HpyF3I	CTNAG	2 cut(s)	49, 332
HpySE526I	ACGT	1 cut(s)	338
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	6 cut(s)	23, 31, 144, 473, 523, 533
HspAI	GCGC	1 cut(s)	517
Ksp22I	TGATCA	1 cut(s)	498
Kzo9I	GATC	4 cut(s)	208, 291, 424, 498
LmnI	GCTCC	1 cut(s)	309
LpnPI	CCDG	5 cut(s)	344, 359, 404, 490, 509
Lsp1109I	GCAGC	2 cut(s)	169, 473
LweI	GCATC	2 cut(s)	321, 531
MaeI	CTAG	3 cut(s)	179, 266, 547
MaeII	ACGT	1 cut(s)	338
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	4 cut(s)	210, 293, 426, 500
MboI	GATC	4 cut(s)	208, 291, 424, 498
MboII	GAAGA	2 cut(s)	218, 292
MfeI	CAATTG	1 cut(s)	456
MflI	RGATCY	1 cut(s)	208
MluCI	AATT	3 cut(s)	252, 404, 456
MlyI	GAGTC	1 cut(s)	54
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	3 cut(s)	71, 134, 239
Mph1103I	ATGCAT	1 cut(s)	25
MslI	CAYNNNNRTG	1 cut(s)	113
MspI	CCGG	1 cut(s)	346
MunI	CAATTG	1 cut(s)	456
Mva1269I	GAATGC	1 cut(s)	23
MwoI	GCNNNNNNNGC	4 cut(s)	16, 20, 324, 461
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	4 cut(s)	208, 291, 424, 498
NlaIII	CATG	6 cut(s)	23, 31, 144, 473, 523, 533
NlaIV	GGNNCC	1 cut(s)	475
NsiI	ATGCAT	1 cut(s)	25
NspI	RCATGY	2 cut(s)	23, 144
NspV	TTCGAA	1 cut(s)	204
PaeI	GCATGC	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PctI	GAATGC	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	174, 430
PkrI	GCNGC	3 cut(s)	184, 437, 463
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PpuMI	RGGWCCY	1 cut(s)	493
Psp5II	RGGWCCY	1 cut(s)	493
PspN4I	GGNNCC	1 cut(s)	475
PspPI	GGNCC	2 cut(s)	121, 493
PspPPI	RGGWCCY	1 cut(s)	493
PsrI	GAACNNNNNNTAC	2 cut(s)	347, 379
PstNI	CAGNNNCTG	1 cut(s)	418
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
RseI	CAYNNNNRTG	1 cut(s)	113
SatI	GCNGC	3 cut(s)	183, 436, 462
Sau3AI	GATC	4 cut(s)	208, 291, 424, 498
Sau96I	GGNCC	2 cut(s)	121, 493
SchI	GAGTC	1 cut(s)	54
SetI	ASST	8 cut(s)	63, 104, 126, 184, 283, 341, 420, 498
SfaNI	GCATC	2 cut(s)	321, 531
SfuI	TTCGAA	1 cut(s)	204
SinI	GGWCC	2 cut(s)	121, 493
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	3 cut(s)	252, 404, 456
SsiI	CCGC	1 cut(s)	436
SspI	AATATT	1 cut(s)	223
SspMI	CTAG	3 cut(s)	179, 266, 547
TaaI	ACNGT	2 cut(s)	112, 449
TaiI	ACGT	1 cut(s)	341
TaqI	TCGA	1 cut(s)	204
TasI	AATT	3 cut(s)	252, 404, 456
TauI	GCSGC	1 cut(s)	438
TfiI	GAWTC	2 cut(s)	174, 430
TscAI	CASTG	1 cut(s)	21
TseI	GCWGC	2 cut(s)	182, 461
TspDTI	ATGAA	4 cut(s)	16, 230, 458, 546
TspRI	CASTG	1 cut(s)	21
VpaK11BI	GGWCC	2 cut(s)	121, 493
XceI	RCATGY	2 cut(s)	23, 144
XmiI	GTMKAC	2 cut(s)	57, 86
XspI	CTAG	3 cut(s)	179, 266, 547
Zsp2I	ATGCAT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.