MD09G1046300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000247
Physical Location & Seq
Reverse (-)
3021007 .. 3022379
1373 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1046300.v1.1.491

Sequence Viewer

Length: 633 bp
ATGCCAAGAATCCACATCCCCGTTATGAACGTCGGAACTTCGGTTAATCCTCCACAAATCTCAGCTGGCAGCCCTATGGAGGAGGGTGGTCGGTACAAATCTCCACCGGCAGCACACAAATGTATATACCATCTCCTCAACATCCTAGGAGTTCTCCTCCAGGTGAAGCTTGCGACCGGAAATTTACCGTCTCCATTTGTCACAGACCACAACACTGTTGTGATGTTGATTGCTGTTTTACTCACTTACGCGGGGACATTGCAGACTGCCAACATTCTCCAAGCTTCCAACAATACAAATATATACGAACTGATGAACAACATCAGCCTCTTGTGTGGAACTCTTGCGTTGGTTCTACTGGTGCTCCTCCTCGTTCCAGCTTTCGGTTGGTTTACTCTTGCATGTTGGGCCTTATATTTTGTGATAATCGCGACCAAGTCCTTCCAAATCCTAAGAGGACTCTGTACTGCAGCTGTTGGTTATGTCAGTGAAAAATACCAAACCTTAATAAGACTCTGTACTGCAGCTGTCGGTTATGTCTGTTACAAAATTGAGGAGCTGATGATGAGTTTGAATACTCCCACTGATCATACTCGCAACATTCAAACTCACAACCAAATACGCGCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

22.99

Weight (kDa)

8.76

Isoelectric Point (pI)

58.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 251, 431, 624
AciI CCGC 1 cut(s) 251
AcsI RAATTY 1 cut(s) 181
AfaI GTAC 3 cut(s) 95, 466, 520
AfiI CCNNNNNNNGG 2 cut(s) 79, 383
AgsI TTSAA 2 cut(s) 574, 605
AjnI CCWGG 1 cut(s) 159
AleI CACNNNNGTG 1 cut(s) 218
AluBI AGCT 7 cut(s) 65, 169, 284, 380, 473, 527, 559
AluI AGCT 7 cut(s) 65, 169, 284, 380, 473, 527, 559
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 1 cut(s) 195
AoxI GGCC 1 cut(s) 408
ApeKI GCWGC 4 cut(s) 69, 110, 470, 524
ApoI RAATTY 1 cut(s) 181
AspA2I CCTAGG 1 cut(s) 145
AspLEI GCGC 1 cut(s) 626
AspS9I GGNCC 1 cut(s) 408
AsuHPI GGTGA 1 cut(s) 175
AvrII CCTAGG 1 cut(s) 145
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 4 cut(s) 81, 122, 482, 536
BccI CCATC 1 cut(s) 138
BciT130I CCWGG 1 cut(s) 161
BclI TGATCA 1 cut(s) 586
BcoDI GTCTC 1 cut(s) 195
BfaI CTAG 1 cut(s) 146
BfmI CTRYAG 2 cut(s) 468, 522
BisI GCNGC 4 cut(s) 70, 111, 471, 525
BlnI CCTAGG 1 cut(s) 145
BlsI GCNGC 4 cut(s) 71, 112, 472, 526
Bme1390I CCNGG 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 408
BmrFI CCNGG 1 cut(s) 161
BplI GAGNNNNNCTC 2 cut(s) 141, 173
BpmI CTGGAG 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 145
BsaWI WCCGGW 1 cut(s) 176
BsaXI ACNNNNNCTCC 2 cut(s) 348, 378
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 383
Bse118I RCCGGY 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 363
Bse3DI GCAATG 1 cut(s) 257
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 145
BseGI GGATG 2 cut(s) 15, 141
BseLI CCNNNNNNNGG 2 cut(s) 79, 383
BseMI GCAATG 1 cut(s) 257
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 363
BseRI GAGGAG 6 cut(s) 95, 125, 146, 356, 359, 569
BseXI GCAGC 4 cut(s) 81, 122, 482, 536
Bsh1236I CGCG 3 cut(s) 251, 431, 624
Bsh1285I CGRYCG 1 cut(s) 177
BshFI GGCC 1 cut(s) 410
BsiEI CGRYCG 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 366
BsiSI CCGG 2 cut(s) 107, 177
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 2 cut(s) 79, 383
BsmAI GTCTC 1 cut(s) 195
BsmBI CGTCTC 1 cut(s) 195
BsmFI GGGAC 1 cut(s) 268
BsnI GGCC 1 cut(s) 410
Bsp1286I GDGCHC 1 cut(s) 366
Bsp143I GATC 1 cut(s) 586
Bsp68I TCGCGA 1 cut(s) 431
BspACI CCGC 1 cut(s) 251
BspANI GGCC 1 cut(s) 410
BspCNI CTCAG 1 cut(s) 74
BspFNI CGCG 3 cut(s) 251, 431, 624
BspMAI CTGCAG 2 cut(s) 472, 526
BsrDI GCAATG 1 cut(s) 257
BsrFI RCCGGY 1 cut(s) 106
BsrI ACTGG 1 cut(s) 363
BssAI RCCGGY 1 cut(s) 106
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 1 cut(s) 586
BssT1I CCWWGG 1 cut(s) 145
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 2 cut(s) 189, 217
BstC8I GCNNGC 2 cut(s) 67, 171
BstDEI CTNAG 3 cut(s) 61, 452, 630
BstF5I GGATG 2 cut(s) 15, 141
BstFNI CGCG 3 cut(s) 251, 431, 624
BstHHI GCGC 1 cut(s) 626
BstKTI GATC 1 cut(s) 589
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 1 cut(s) 586
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 1 cut(s) 407
BstNI CCWGG 1 cut(s) 161
BstNSI RCATGY 1 cut(s) 405
BstSCI CCNGG 1 cut(s) 159
BstSFI CTRYAG 2 cut(s) 468, 522
BstUI CGCG 3 cut(s) 251, 431, 624
BstV1I GCAGC 4 cut(s) 81, 122, 482, 536
BsuRI GGCC 1 cut(s) 410
BtsCI GGATG 2 cut(s) 15, 141
BtsIMutI CAGTG 3 cut(s) 213, 493, 582
BtuMI TCGCGA 1 cut(s) 431
Cac8I GCNNGC 2 cut(s) 67, 171
CfoI GCGC 1 cut(s) 626
Cfr10I RCCGGY 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 408
Csp6I GTAC 3 cut(s) 94, 465, 519
CviAII CATG 1 cut(s) 402
CviQI GTAC 3 cut(s) 94, 465, 519
DdeI CTNAG 3 cut(s) 61, 452, 630
DpnI GATC 1 cut(s) 588
DpnII GATC 1 cut(s) 586
Eco130I CCWWGG 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 145
Esp3I CGTCTC 1 cut(s) 195
FaeI CATG 1 cut(s) 405
FaqI GGGAC 1 cut(s) 268
FatI CATG 1 cut(s) 401
FauI CCCGC 1 cut(s) 244
FbaI TGATCA 1 cut(s) 586
Fnu4HI GCNGC 4 cut(s) 70, 111, 471, 525
FokI GGATG 2 cut(s) 2, 128
Fsp4HI GCNGC 4 cut(s) 70, 111, 471, 525
FspBI CTAG 1 cut(s) 146
GlaI GCGC 1 cut(s) 625
GluI GCNGC 4 cut(s) 70, 111, 471, 525
GsuI CTGGAG 1 cut(s) 143
HaeIII GGCC 1 cut(s) 410
HapII CCGG 2 cut(s) 107, 177
HhaI GCGC 1 cut(s) 626
Hin1II CATG 1 cut(s) 405
Hin6I GCGC 1 cut(s) 624
HinP1I GCGC 1 cut(s) 624
HindIII AAGCTT 2 cut(s) 167, 282
HinfI GANTC 3 cut(s) 9, 459, 513
HpaII CCGG 2 cut(s) 107, 177
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 1 cut(s) 393
Hpy188I TCNGA 1 cut(s) 35
Hpy188III TCNNGA 1 cut(s) 430
Hpy8I GTNNAC 1 cut(s) 393
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 1 cut(s) 451
HpyCH4III ACNGT 2 cut(s) 189, 217
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 4 cut(s) 262, 401, 470, 524
HpyF10VI GCNNNNNNNGC 1 cut(s) 407
HpyF3I CTNAG 3 cut(s) 61, 452, 630
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 1 cut(s) 405
HspAI GCGC 1 cut(s) 624
Ksp22I TGATCA 1 cut(s) 586
Kzo9I GATC 1 cut(s) 586
LmnI GCTCC 2 cut(s) 369, 556
LpnPI CCDG 7 cut(s) 51, 120, 146, 173, 190, 344, 390
Lsp1109I GCAGC 4 cut(s) 81, 122, 482, 536
MaeI CTAG 1 cut(s) 146
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 2 cut(s) 199, 542
MalI GATC 1 cut(s) 588
MboI GATC 1 cut(s) 586
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 2 cut(s) 181, 549
MlyI GAGTC 2 cut(s) 453, 507
MmeI TCCRAC 2 cut(s) 13, 312
MseI TTAA 2 cut(s) 45, 506
MslI CAYNNNNRTG 2 cut(s) 118, 218
MspA1I CMGCKG 3 cut(s) 65, 473, 527
MspI CCGG 2 cut(s) 107, 177
MspR9I CCNGG 1 cut(s) 161
MvaI CCWGG 1 cut(s) 161
MvnI CGCG 3 cut(s) 251, 431, 624
MwoI GCNNNNNNNGC 1 cut(s) 407
NdeII GATC 1 cut(s) 586
NlaIII CATG 1 cut(s) 405
NmuCI GTSAC 1 cut(s) 199
NruI TCGCGA 1 cut(s) 431
NspI RCATGY 1 cut(s) 405
OliI CACNNNNGTG 1 cut(s) 218
PfeI GAWTC 1 cut(s) 9
PflFI GACNNNGTC 1 cut(s) 436
PkrI GCNGC 4 cut(s) 71, 112, 472, 526
PleI GAGTC 2 cut(s) 453, 507
PpsI GAGTC 2 cut(s) 453, 507
Psp6I CCWGG 1 cut(s) 159
PspGI CCWGG 1 cut(s) 159
PspPI GGNCC 1 cut(s) 408
PstI CTGCAG 2 cut(s) 472, 526
PsyI GACNNNGTC 1 cut(s) 436
PvuII CAGCTG 3 cut(s) 65, 473, 527
RruI TCGCGA 1 cut(s) 431
RsaI GTAC 3 cut(s) 95, 466, 520
RsaNI GTAC 3 cut(s) 94, 465, 519
RseI CAYNNNNRTG 2 cut(s) 118, 218
SaqAI TTAA 2 cut(s) 45, 506
SatI GCNGC 4 cut(s) 70, 111, 471, 525
Sau3AI GATC 1 cut(s) 586
Sau96I GGNCC 1 cut(s) 408
SchI GAGTC 2 cut(s) 453, 507
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 1 cut(s) 366
SfcI CTRYAG 2 cut(s) 468, 522
SmiMI CAYNNNNRTG 2 cut(s) 118, 218
Sse9I AATT 2 cut(s) 181, 549
SsiI CCGC 1 cut(s) 251
SspMI CTAG 1 cut(s) 146
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 2 cut(s) 189, 217
TaiI ACGT 1 cut(s) 33
TasI AATT 2 cut(s) 181, 549
TatI WGTACW 2 cut(s) 464, 518
TfiI GAWTC 1 cut(s) 9
Tru1I TTAA 2 cut(s) 45, 506
Tru9I TTAA 2 cut(s) 45, 506
TscAI CASTG 3 cut(s) 220, 493, 589
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 4 cut(s) 69, 110, 470, 524
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 2 cut(s) 41, 329
TspRI CASTG 3 cut(s) 220, 493, 589
Tth111I GACNNNGTC 1 cut(s) 436
XapI RAATTY 1 cut(s) 181
XceI RCATGY 1 cut(s) 405
XcmI CCANNNNNNNNNTGG 1 cut(s) 384
XmaJI CCTAGG 1 cut(s) 145
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.