pycom17g05450

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
3867407 .. 3867973
567 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g05450.1

Sequence Viewer

Length: 567 bp
ATGCCAAATAATTATGGCTTTGAAAAAGCCACAAAACATGGCTTTGAAAAAGCCACAAAACATTGCTTTGAAAAAGCCACAAAACAAGGAACTAATTTGGCCATTATCCAACAATTGGCAGTCAAGATACTCCAAGCTCGTAAAAATCCAGATTTGTCTGAGTTCGTGGATAAAATTAGCCTCTTGTCAGGAACACTTGCCATAACCTTAGAATTGTTGATTCTGGTTCCAGCTTTGGGGTGGTTCGCCATCGCAGCATGGAGCATTTGCCTTGTGATTGCAGTAACAAAGTCGTACCGTGAAATTGCAGATGTTTTGAAAAGTTTGTATCGGGAAGCACGTGAACAGCTTCTTCAGGTGTTTAACAAATTGAAAGAGTTCTCCATGAATATTGGTGCAAGTGCAGGAGTTGTTGCAGCCGGAATCTTTGACAAATTGAAAAAGTTGGCTATGGGATCCGATCAGCCGAATGGTGCAAGTGCAAGTGCAGGAGATGTTGAAATAATTGTTGGGGCTTTAAAATACTTCACTACTTTGGAGATGTTTATCTCACAAAGAAGAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

20.64

Weight (kDa)

9.32

Isoelectric Point (pI)

21.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 115
AclWI GGATC 2 cut(s) 450, 463
AcoI YGGCCR 1 cut(s) 99
AcuI CTGAAG 1 cut(s) 338
AcvI CACGTG 1 cut(s) 341
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 2 cut(s) 115, 236
AgsI TTSAA 7 cut(s) 23, 47, 71, 319, 373, 439, 500
AjuI GAANNNNNNNTTGG 2 cut(s) 492, 524
AluBI AGCT 3 cut(s) 137, 233, 349
AluI AGCT 3 cut(s) 137, 233, 349
AlwI GGATC 2 cut(s) 450, 463
AoxI GGCC 1 cut(s) 99
ApeKI GCWGC 2 cut(s) 254, 416
Asp700I GAANNNNTTC 2 cut(s) 348, 377
BalI TGGCCA 1 cut(s) 101
BamHI GGATCC 1 cut(s) 455
BbrPI CACGTG 1 cut(s) 341
BbvI GCAGC 2 cut(s) 266, 428
BccI CCATC 1 cut(s) 257
BisI GCNGC 2 cut(s) 255, 417
BlsI GCNGC 2 cut(s) 256, 418
BmiI GGNNCC 2 cut(s) 228, 457
BsaAI YACGTR 1 cut(s) 341
BsaBI GATNNNNATC 1 cut(s) 545
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 236
Bse3DI GCAATG 1 cut(s) 61
Bse8I GATNNNNATC 1 cut(s) 545
BseJI GATNNNNATC 1 cut(s) 545
BseLI CCNNNNNNNGG 2 cut(s) 115, 236
BseMI GCAATG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 150
BseXI GCAGC 2 cut(s) 266, 428
BsgI GTGCAG 2 cut(s) 423, 507
BshFI GGCC 1 cut(s) 101
BsiSI CCGG 1 cut(s) 420
BslI CCNNNNNNNGG 2 cut(s) 115, 236
BsnI GGCC 1 cut(s) 101
Bsp143I GATC 2 cut(s) 455, 460
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 1 cut(s) 151
BspLI GGNNCC 2 cut(s) 228, 457
BspPI GGATC 2 cut(s) 450, 463
BsrDI GCAATG 1 cut(s) 61
BssMI GATC 2 cut(s) 455, 460
Bst4CI ACNGT 1 cut(s) 299
BstBAI YACGTR 1 cut(s) 341
BstDEI CTNAG 2 cut(s) 159, 208
BstKTI GATC 2 cut(s) 458, 463
BstMBI GATC 2 cut(s) 455, 460
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstV1I GCAGC 2 cut(s) 266, 428
BstX2I RGATCY 1 cut(s) 455
BstYI RGATCY 1 cut(s) 455
BsuRI GGCC 1 cut(s) 101
BtgZI GCGATG 1 cut(s) 235
Csp6I GTAC 1 cut(s) 295
CviAII CATG 3 cut(s) 38, 258, 385
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 2 cut(s) 159, 208
DpnI GATC 2 cut(s) 457, 462
DpnII GATC 2 cut(s) 455, 460
DraI TTTAAA 1 cut(s) 519
EaeI YGGCCR 1 cut(s) 99
Eco57I CTGAAG 1 cut(s) 338
Eco72I CACGTG 1 cut(s) 341
FaeI CATG 3 cut(s) 41, 261, 388
FaiI YATR 6 cut(s) 15, 39, 203, 259, 386, 452
FatI CATG 3 cut(s) 37, 257, 384
Fnu4HI GCNGC 2 cut(s) 255, 417
Fsp4HI GCNGC 2 cut(s) 255, 417
GluI GCNGC 2 cut(s) 255, 417
HaeIII GGCC 1 cut(s) 101
HapII CCGG 1 cut(s) 420
Hin1II CATG 3 cut(s) 41, 261, 388
HinfI GANTC 2 cut(s) 220, 423
HpaII CCGG 1 cut(s) 420
Hpy166II GTNNAC 1 cut(s) 344
Hpy188I TCNGA 2 cut(s) 160, 460
Hpy188III TCNNGA 4 cut(s) 124, 149, 189, 332
Hpy8I GTNNAC 1 cut(s) 344
HpyCH4III ACNGT 1 cut(s) 299
HpyCH4IV ACGT 1 cut(s) 340
HpyCH4V TGCA 8 cut(s) 281, 308, 398, 404, 416, 476, 482, 488
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 2 cut(s) 159, 208
HpySE526I ACGT 1 cut(s) 340
Hsp92II CATG 3 cut(s) 41, 261, 388
Kzo9I GATC 2 cut(s) 455, 460
LmnI GCTCC 1 cut(s) 261
LpnPI CCDG 8 cut(s) 162, 174, 209, 243, 341, 390, 433, 474
Lsp1109I GCAGC 2 cut(s) 266, 428
MaeII ACGT 1 cut(s) 340
MaeIII GTNAC 1 cut(s) 283
MalI GATC 2 cut(s) 457, 462
MboI GATC 2 cut(s) 455, 460
MboII GAAGA 1 cut(s) 344
MfeI CAATTG 1 cut(s) 113
MflI RGATCY 1 cut(s) 455
MlsI TGGCCA 1 cut(s) 101
MluCI AATT 9 cut(s) 10, 94, 113, 174, 212, 303, 368, 434, 504
MluNI TGGCCA 1 cut(s) 101
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 1 cut(s) 191
Mox20I TGGCCA 1 cut(s) 101
MroXI GAANNNNTTC 2 cut(s) 348, 377
MscI TGGCCA 1 cut(s) 101
MseI TTAA 2 cut(s) 363, 518
Msp20I TGGCCA 1 cut(s) 101
MspI CCGG 1 cut(s) 420
MunI CAATTG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 254
NdeII GATC 2 cut(s) 455, 460
NlaIII CATG 3 cut(s) 41, 261, 388
NlaIV GGNNCC 2 cut(s) 228, 457
PcsI WCGNNNNNNNCGW 1 cut(s) 337
PdmI GAANNNNTTC 2 cut(s) 348, 377
PfeI GAWTC 2 cut(s) 220, 423
PflMI CCANNNNNTGG 1 cut(s) 115
PkrI GCNGC 2 cut(s) 256, 418
PmaCI CACGTG 1 cut(s) 341
PmlI CACGTG 1 cut(s) 341
Ppu21I YACGTR 1 cut(s) 341
PspCI CACGTG 1 cut(s) 341
PspN4I GGNNCC 2 cut(s) 228, 457
PsuI RGATCY 1 cut(s) 455
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SaqAI TTAA 2 cut(s) 363, 518
SatI GCNGC 2 cut(s) 255, 417
Sau3AI GATC 2 cut(s) 455, 460
SetI ASST 6 cut(s) 139, 209, 235, 343, 351, 360
Sse9I AATT 9 cut(s) 10, 94, 113, 174, 212, 303, 368, 434, 504
SspI AATATT 1 cut(s) 391
TaaI ACNGT 1 cut(s) 299
TaiI ACGT 1 cut(s) 343
TasI AATT 9 cut(s) 10, 94, 113, 174, 212, 303, 368, 434, 504
TfiI GAWTC 2 cut(s) 220, 423
Tru1I TTAA 2 cut(s) 363, 518
Tru9I TTAA 2 cut(s) 363, 518
TseI GCWGC 2 cut(s) 254, 416
TspDTI ATGAA 1 cut(s) 401
Van91I CCANNNNNTGG 1 cut(s) 115
XcmI CCANNNNNNNNNTGG 1 cut(s) 237
XmnI GAANNNNTTC 2 cut(s) 348, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.