Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Forward (+)

10838420 .. 10839091

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G005360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGATGTAGGAGAGTGGTCCTCAGGATATTGTATAGTGACATTGCTGTCATTGCATACATTCATTTTGGCTGTCATCGGAGTCCTAGGCTTCTGCCTCCAACTCAAGTCTCCAGATGCGTCTCCATTTGCGACCGCCTACGGCACTGTGATGATGAACCTCTTCATTATTGTGACATGCTTTTATAGCGCCTTTTTAGTTGTGATGGGAATCATGGCCACTCGCAATAATACAGATTTCGAAGATCTGATGAACAAAATTAGCCTCTTACTTGGAAGTCTGTCCCTGATTTTAGAGTTGCTCATCCTTATTCCACCTTTCGGATGGATCGCACTTTTCTTCTGGAGCATCTGGCTCTTATGCTTCCTGATTAAGTATTACTCTTCTCTGAACACACTCTACCAAAGTGCAGTTGCACTTGTTGTTGAAGACTATGGAGAATTCAAACAGAAGCTGGTTGATTTGAATTGTCGCTTGATGGACAGTGATGCAATTGCACCACTTGGTCGTGTCTATCGGACATTGAAGGACCTGATCATCAGGAATGACGGGCGCATGACAGGGCATGAAGCCCAGAACCAGAACCACACCACTGAGCTACGGCTACCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

204

Amino Acids

22.99

Weight (kDa)

5.27

Isoelectric Point (pI)

28.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	46
AciI	CCGC	1 cut(s)	135
AclWI	GGATC	1 cut(s)	335
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	1 cut(s)	440
AfiI	CCNNNNNNNGG	1 cut(s)	320
AgsI	TTSAA	4 cut(s)	428, 445, 466, 526
AluBI	AGCT	2 cut(s)	454, 598
AluI	AGCT	2 cut(s)	454, 598
Alw26I	GTCTC	2 cut(s)	114, 126
AlwI	GGATC	1 cut(s)	335
AlwNI	CAGNNNCTG	1 cut(s)	454
AoxI	GGCC	1 cut(s)	216
ApoI	RAATTY	1 cut(s)	440
Asp700I	GAANNNNTTC	1 cut(s)	161
AspA2I	CCTAGG	1 cut(s)	85
AspLEI	GCGC	2 cut(s)	191, 555
AspS9I	GGNCC	2 cut(s)	18, 529
AsuII	TTCGAA	1 cut(s)	240
AvaII	GGWCC	2 cut(s)	18, 529
AvrII	CCTAGG	1 cut(s)	85
AxyI	CCTNAGG	1 cut(s)	22
BalI	TGGCCA	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	435
BccI	CCATC	3 cut(s)	199, 318, 472
BceAI	ACGGC	1 cut(s)	157
BclI	TGATCA	1 cut(s)	534
BcoDI	GTCTC	2 cut(s)	114, 126
BfaI	CTAG	1 cut(s)	86
BfoI	RGCGCY	1 cut(s)	192
BglII	AGATCT	1 cut(s)	244
BlnI	CCTAGG	1 cut(s)	85
Bme18I	GGWCC	2 cut(s)	18, 529
BmgT120I	GGNCC	2 cut(s)	18, 529
BmsI	GCATC	3 cut(s)	106, 357, 478
BpiI	GAAGAC	1 cut(s)	435
BplI	GAGNNNNNCTC	1 cut(s)	37
BpmI	CTGGAG	2 cut(s)	96, 364
Bpu14I	TTCGAA	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	89
BsaBI	GATNNNNATC	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse21I	CCTNAGG	1 cut(s)	22
Bse3DI	GCAATG	2 cut(s)	41, 50
Bse8I	GATNNNNATC	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	85
BseGI	GGATG	3 cut(s)	10, 303, 329
BseJI	GATNNNNATC	1 cut(s)	209
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMI	GCAATG	2 cut(s)	41, 50
BseMII	CTCAG	2 cut(s)	36, 585
BsgI	GTGCAG	1 cut(s)	429
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	1 cut(s)	218
BsiEI	CGRYCG	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmAI	GTCTC	2 cut(s)	114, 126
BsmBI	CGTCTC	1 cut(s)	126
BsmFI	GGGAC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	218
Bsp119I	TTCGAA	1 cut(s)	240
Bsp143I	GATC	3 cut(s)	244, 327, 534
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	1 cut(s)	218
BspCNI	CTCAG	2 cut(s)	35, 586
BspPI	GGATC	1 cut(s)	335
BspT104I	TTCGAA	1 cut(s)	240
BsrDI	GCAATG	2 cut(s)	41, 50
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	3 cut(s)	244, 327, 534
BssT1I	CCWWGG	1 cut(s)	85
Bst4CI	ACNGT	2 cut(s)	148, 485
Bst6I	CTCTTC	2 cut(s)	167, 388
BstBI	TTCGAA	1 cut(s)	240
BstDEI	CTNAG	2 cut(s)	22, 594
BstF5I	GGATG	3 cut(s)	10, 303, 329
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	2 cut(s)	191, 555
BstKTI	GATC	3 cut(s)	247, 330, 537
BstMAI	GTCTC	2 cut(s)	114, 126
BstMBI	GATC	3 cut(s)	244, 327, 534
BstMCI	CGRYCG	1 cut(s)	135
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 186
BstNSI	RCATGY	1 cut(s)	180
BstV2I	GAAGAC	1 cut(s)	435
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
Bsu36I	CCTNAGG	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	218
BtsCI	GGATG	3 cut(s)	10, 303, 329
BtsIMutI	CAGTG	3 cut(s)	144, 490, 591
CaiI	CAGNNNCTG	1 cut(s)	454
CfoI	GCGC	2 cut(s)	191, 555
Cfr13I	GGNCC	2 cut(s)	18, 529
CseI	GACGC	1 cut(s)	108
CviAII	CATG	4 cut(s)	177, 214, 556, 566
CviJI	RGCY	9 cut(s)	71, 90, 218, 264, 355, 454, 572, 598, 604
CviKI_1	RGCY	9 cut(s)	71, 90, 218, 264, 355, 454, 572, 598, 604
DdeI	CTNAG	2 cut(s)	22, 594
DpnI	GATC	3 cut(s)	246, 329, 536
DpnII	GATC	3 cut(s)	244, 327, 534
DrdI	GACNNNNNNGTC	1 cut(s)	46
DseDI	GACNNNNNNGTC	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	2 cut(s)	167, 388
EarI	CTCTTC	2 cut(s)	167, 388
Eco130I	CCWWGG	1 cut(s)	85
Eco47I	GGWCC	2 cut(s)	18, 529
Eco81I	CCTNAGG	1 cut(s)	22
EcoO109I	RGGNCCY	1 cut(s)	529
EcoRI	GAATTC	1 cut(s)	440
EcoT14I	CCWWGG	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	85
Esp3I	CGTCTC	1 cut(s)	126
FaeI	CATG	4 cut(s)	180, 217, 559, 569
FaiI	YATR	9 cut(s)	35, 57, 178, 186, 215, 361, 435, 557, 567
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	4 cut(s)	176, 213, 555, 565
FbaI	TGATCA	1 cut(s)	534
FokI	GGATG	3 cut(s)	17, 290, 336
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	2 cut(s)	190, 554
GsuI	CTGGAG	2 cut(s)	96, 364
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	218
HgaI	GACGC	1 cut(s)	108
HhaI	GCGC	2 cut(s)	191, 555
Hin1II	CATG	4 cut(s)	180, 217, 559, 569
Hin6I	GCGC	2 cut(s)	189, 553
HinP1I	GCGC	2 cut(s)	189, 553
HinfI	GANTC	2 cut(s)	81, 210
Hpy188I	TCNGA	5 cut(s)	80, 249, 323, 390, 519
Hpy188III	TCNNGA	5 cut(s)	24, 113, 343, 367, 541
HpyAV	CCTTC	1 cut(s)	520
HpyCH4III	ACNGT	2 cut(s)	148, 485
HpyCH4V	TGCA	5 cut(s)	55, 410, 416, 491, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 186
HpyF3I	CTNAG	2 cut(s)	22, 594
Hsp92II	CATG	4 cut(s)	180, 217, 559, 569
HspAI	GCGC	2 cut(s)	189, 553
Ksp22I	TGATCA	1 cut(s)	534
Kzo9I	GATC	3 cut(s)	244, 327, 534
LmnI	GCTCC	1 cut(s)	345
LweI	GCATC	3 cut(s)	106, 357, 478
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	37, 172
MalI	GATC	3 cut(s)	246, 329, 536
MboI	GATC	3 cut(s)	244, 327, 534
MboII	GAAGA	5 cut(s)	154, 254, 331, 375, 440
MfeI	CAATTG	1 cut(s)	492
MflI	RGATCY	1 cut(s)	244
MlsI	TGGCCA	1 cut(s)	218
MluCI	AATT	4 cut(s)	258, 440, 466, 492
MluNI	TGGCCA	1 cut(s)	218
MlyI	GAGTC	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	124
MnlI	CCTC	4 cut(s)	31, 107, 170, 275
Mox20I	TGGCCA	1 cut(s)	218
MroXI	GAANNNNTTC	1 cut(s)	161
MscI	TGGCCA	1 cut(s)	218
MseI	TTAA	2 cut(s)	372, 613
MslI	CAYNNNNRTG	2 cut(s)	149, 170
Msp20I	TGGCCA	1 cut(s)	218
MunI	CAATTG	1 cut(s)	492
MwoI	GCNNNNNNNGC	2 cut(s)	52, 186
NdeII	GATC	3 cut(s)	244, 327, 534
NlaIII	CATG	4 cut(s)	180, 217, 559, 569
NmuCI	GTSAC	2 cut(s)	37, 172
NspI	RCATGY	1 cut(s)	180
NspV	TTCGAA	1 cut(s)	240
PdmI	GAANNNNTTC	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	210
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
PpuMI	RGGWCCY	1 cut(s)	529
Psp5II	RGGWCCY	1 cut(s)	529
PspPI	GGNCC	2 cut(s)	18, 529
PspPPI	RGGWCCY	1 cut(s)	529
PsrI	GAACNNNNNNTAC	2 cut(s)	383, 415
PstNI	CAGNNNCTG	1 cut(s)	454
PsuI	RGATCY	1 cut(s)	244
RseI	CAYNNNNRTG	2 cut(s)	149, 170
SaqAI	TTAA	2 cut(s)	372, 613
Sau3AI	GATC	3 cut(s)	244, 327, 534
Sau96I	GGNCC	2 cut(s)	18, 529
SchI	GAGTC	1 cut(s)	90
SetI	ASST	6 cut(s)	162, 319, 456, 534, 600, 610
SfaNI	GCATC	3 cut(s)	106, 357, 478
SfuI	TTCGAA	1 cut(s)	240
SinI	GGWCC	2 cut(s)	18, 529
SmiMI	CAYNNNNRTG	2 cut(s)	149, 170
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	4 cut(s)	258, 440, 466, 492
SsiI	CCGC	1 cut(s)	135
SspMI	CTAG	1 cut(s)	86
StyI	CCWWGG	1 cut(s)	85
TaaI	ACNGT	2 cut(s)	148, 485
TaqI	TCGA	1 cut(s)	240
TasI	AATT	4 cut(s)	258, 440, 466, 492
TfiI	GAWTC	1 cut(s)	210
Tru1I	TTAA	2 cut(s)	372, 613
Tru9I	TTAA	2 cut(s)	372, 613
TscAI	CASTG	3 cut(s)	151, 490, 598
TseFI	GTSAC	2 cut(s)	37, 172
Tsp45I	GTSAC	2 cut(s)	37, 172
TspDTI	ATGAA	5 cut(s)	52, 154, 170, 266, 582
TspRI	CASTG	3 cut(s)	151, 490, 598
VpaK11BI	GGWCC	2 cut(s)	18, 529
XapI	RAATTY	1 cut(s)	440
XceI	RCATGY	1 cut(s)	180
XcmI	CCANNNNNNNNNTGG	1 cut(s)	321
XmaJI	CCTAGG	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	161
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.