Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013600.1

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Reverse (-)

10239 .. 10763

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013600.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atggtgacattgcatacatgcaaagttgctttcatcggcatctttggagtctccatccaattcaagtttccaaatgtgtctccatatgcgacctcctacggcgctgtgatgatgaacctcttcaatattgtagcattcttttacttcgtctctctagttgtgatgggaatccaagctgctggcaataatacagatttggaagatctgatgaacaaaatcagcctcttacttggaagtctgtccctgattttagagttgcttgtccttatttcacctttcggatggatcgtactcttcttctggggcatctgcctttcatgcttcgtgcgtaagtattactggtctctggcaacactctaccaaaatgcagctgcatatattattacagactttggagaattgaaacagaagctggttgatttgaaatgccgcttgatggacatgatcataaggaatgacgggcgcatgactgagaatgaatcccagaaccagaaccggaaccacgccaatgaggcacctgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

174

Amino Acids

19.7

Weight (kDa)

6.71

Isoelectric Point (pI)

26.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	514
AciI	CCGC	1 cut(s)	430
AclWI	GGATC	1 cut(s)	293
AfaI	GTAC	1 cut(s)	291
AfiI	CCNNNNNNNGG	1 cut(s)	436
AgsI	TTSAA	4 cut(s)	64, 124, 403, 424
AjuI	GAANNNNNNNTTGG	2 cut(s)	51, 83
AluBI	AGCT	3 cut(s)	176, 371, 412
AluI	AGCT	3 cut(s)	176, 371, 412
Alw26I	GTCTC	4 cut(s)	55, 84, 154, 348
AlwI	GGATC	1 cut(s)	293
AlwNI	CAGNNNCTG	1 cut(s)	412
ApeKI	GCWGC	3 cut(s)	176, 368, 371
Asp700I	GAANNNNTTC	1 cut(s)	119
AspLEI	GCGC	2 cut(s)	104, 465
AsuHPI	GGTGA	2 cut(s)	16, 264
BanI	GGYRCC	1 cut(s)	514
BbvI	GCAGC	3 cut(s)	163, 358, 380
BccI	CCATC	4 cut(s)	62, 157, 276, 430
BceAI	ACGGC	1 cut(s)	115
BclI	TGATCA	1 cut(s)	444
BcoDI	GTCTC	4 cut(s)	55, 84, 154, 348
BfaI	CTAG	1 cut(s)	155
BfoI	RGCGCY	1 cut(s)	105
BglI	GCCNNNNNGGC	1 cut(s)	512
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	4 cut(s)	177, 369, 372, 430
BlsI	GCNGC	4 cut(s)	178, 370, 373, 431
BmiI	GGNNCC	2 cut(s)	500, 516
BmsI	GCATC	2 cut(s)	48, 315
BsaBI	GATNNNNATC	1 cut(s)	167
BsaI	GGTCTC	1 cut(s)	348
BsaWI	WCCGGW	1 cut(s)	495
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse1I	ACTGG	1 cut(s)	344
Bse3DI	GCAATG	1 cut(s)	8
Bse8I	GATNNNNATC	1 cut(s)	167
BseGI	GGATG	2 cut(s)	54, 287
BseJI	GATNNNNATC	1 cut(s)	167
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMI	GCAATG	1 cut(s)	8
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	1 cut(s)	344
BseXI	GCAGC	3 cut(s)	163, 358, 380
BshNI	GGYRCC	1 cut(s)	514
BsiSI	CCGG	1 cut(s)	496
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	1 cut(s)	436
BsmAI	GTCTC	4 cut(s)	55, 84, 154, 348
BsmBI	CGTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	226
BsmI	GAATGC	1 cut(s)	134
Bso31I	GGTCTC	1 cut(s)	348
Bsp143I	GATC	3 cut(s)	202, 285, 444
BspACI	CCGC	1 cut(s)	430
BspCNI	CTCAG	1 cut(s)	463
BspLI	GGNNCC	2 cut(s)	500, 516
BspPI	GGATC	1 cut(s)	293
BspT107I	GGYRCC	1 cut(s)	514
BspTNI	GGTCTC	1 cut(s)	348
BsrDI	GCAATG	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	344
BssMI	GATC	3 cut(s)	202, 285, 444
Bst6I	CTCTTC	2 cut(s)	125, 299
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	1 cut(s)	471
BstF5I	GGATG	2 cut(s)	54, 287
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	2 cut(s)	104, 465
BstKTI	GATC	3 cut(s)	205, 288, 447
BstMAI	GTCTC	4 cut(s)	55, 84, 154, 348
BstMBI	GATC	3 cut(s)	202, 285, 444
BstMWI	GCNNNNNNNGC	2 cut(s)	318, 512
BstNSI	RCATGY	1 cut(s)	21
BstV1I	GCAGC	3 cut(s)	163, 358, 380
BstX2I	RGATCY	1 cut(s)	202
BstXI	CCANNNNNNTGG	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	202
BtsCI	GGATG	2 cut(s)	54, 287
Cac8I	GCNNGC	1 cut(s)	181
CaiI	CAGNNNCTG	1 cut(s)	412
CfoI	GCGC	2 cut(s)	104, 465
Csp6I	GTAC	1 cut(s)	290
CviAII	CATG	4 cut(s)	18, 318, 442, 466
CviJI	RGCY	4 cut(s)	176, 222, 371, 412
CviKI_1	RGCY	4 cut(s)	176, 222, 371, 412
CviQI	GTAC	1 cut(s)	290
DdeI	CTNAG	1 cut(s)	471
DpnI	GATC	3 cut(s)	204, 287, 446
DpnII	GATC	3 cut(s)	202, 285, 444
Eam1104I	CTCTTC	2 cut(s)	125, 299
EarI	CTCTTC	2 cut(s)	125, 299
Eco31I	GGTCTC	1 cut(s)	348
Esp3I	CGTCTC	1 cut(s)	154
FaeI	CATG	4 cut(s)	21, 321, 445, 469
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	4 cut(s)	17, 317, 441, 465
FauNDI	CATATG	1 cut(s)	85
FbaI	TGATCA	1 cut(s)	444
Fnu4HI	GCNGC	4 cut(s)	177, 369, 372, 430
FokI	GGATG	2 cut(s)	41, 294
Fsp4HI	GCNGC	4 cut(s)	177, 369, 372, 430
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	2 cut(s)	103, 464
GluI	GCNGC	4 cut(s)	177, 369, 372, 430
HaeII	RGCGCY	1 cut(s)	105
HapII	CCGG	1 cut(s)	496
HhaI	GCGC	2 cut(s)	104, 465
Hin1II	CATG	4 cut(s)	21, 321, 445, 469
Hin6I	GCGC	2 cut(s)	102, 463
HinP1I	GCGC	2 cut(s)	102, 463
HinfI	GANTC	3 cut(s)	48, 168, 479
HpaII	CCGG	1 cut(s)	496
HphI	GGTGA	2 cut(s)	16, 264
Hpy188I	TCNGA	2 cut(s)	207, 281
HpyCH4V	TGCA	4 cut(s)	13, 21, 368, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	318, 512
HpyF3I	CTNAG	1 cut(s)	471
Hsp92II	CATG	4 cut(s)	21, 321, 445, 469
HspAI	GCGC	2 cut(s)	102, 463
Ksp22I	TGATCA	1 cut(s)	444
Kzo9I	GATC	3 cut(s)	202, 285, 444
LpnPI	CCDG	9 cut(s)	165, 257, 286, 325, 332, 398, 497, 503, 509
Lsp1109I	GCAGC	3 cut(s)	163, 358, 380
LweI	GCATC	2 cut(s)	48, 315
MaeI	CTAG	1 cut(s)	155
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	3 cut(s)	204, 287, 446
MboI	GATC	3 cut(s)	202, 285, 444
MboII	GAAGA	4 cut(s)	112, 212, 286, 289
MflI	RGATCY	1 cut(s)	202
MluCI	AATT	2 cut(s)	59, 398
MlyI	GAGTC	1 cut(s)	57
MnlI	CCTC	4 cut(s)	103, 128, 233, 505
MroXI	GAANNNNTTC	1 cut(s)	119
MseI	TTAA	1 cut(s)	523
MslI	CAYNNNNRTG	1 cut(s)	507
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	1 cut(s)	496
Mva1269I	GAATGC	1 cut(s)	134
MwoI	GCNNNNNNNGC	2 cut(s)	318, 512
NdeI	CATATG	1 cut(s)	85
NdeII	GATC	3 cut(s)	202, 285, 444
NlaIII	CATG	4 cut(s)	21, 321, 445, 469
NlaIV	GGNNCC	2 cut(s)	500, 516
NmuCI	GTSAC	1 cut(s)	4
NspI	RCATGY	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PctI	GAATGC	1 cut(s)	134
PdmI	GAANNNNTTC	1 cut(s)	119
PfeI	GAWTC	2 cut(s)	168, 479
PkrI	GCNGC	4 cut(s)	178, 370, 373, 431
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
PspN4I	GGNNCC	2 cut(s)	500, 516
PstNI	CAGNNNCTG	1 cut(s)	412
PsuI	RGATCY	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	371
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
RseI	CAYNNNNRTG	1 cut(s)	507
SaqAI	TTAA	1 cut(s)	523
SatI	GCNGC	4 cut(s)	177, 369, 372, 430
Sau3AI	GATC	3 cut(s)	202, 285, 444
SchI	GAGTC	1 cut(s)	57
SetI	ASST	7 cut(s)	95, 120, 178, 277, 373, 414, 520
SfaNI	GCATC	2 cut(s)	48, 315
SmiMI	CAYNNNNRTG	1 cut(s)	507
Sse9I	AATT	2 cut(s)	59, 398
SsiI	CCGC	1 cut(s)	430
SspI	AATATT	1 cut(s)	127
SspMI	CTAG	1 cut(s)	155
TasI	AATT	2 cut(s)	59, 398
TauI	GCSGC	1 cut(s)	432
TfiI	GAWTC	2 cut(s)	168, 479
Tru1I	TTAA	1 cut(s)	523
Tru9I	TTAA	1 cut(s)	523
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	3 cut(s)	176, 368, 371
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	5 cut(s)	22, 128, 224, 306, 492
XceI	RCATGY	1 cut(s)	21
XmnI	GAANNNNTTC	1 cut(s)	119
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.