Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

14292520 .. 14293071

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g22374.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGCTGAGCTTCATGGATGCATATGCCGGTTACAATCAGATAGCCATGGACGCGGCCGACGAAGAACATACCGCATTCACCACCGACAAAGGGGTATACTATTATAAGAGGATGCCGTTTGGTTTGAAGAATGCAGGGGCAACCTATCAGCGCCTGATGAACAAAATGTTTGCTAAGCAGCTGGGAGTAACCATGGAAGTATACGTGGATGACATGCTGGTTAAGAGCCTCTCCGCGACCAAGCATGTAAGCGACCTACAAGCAGTCTTCTACATTATCCTCGAATACGGTATGAGGCTGAACCCGGACAAGTGTTTATTTGGGGTTGTCAAAGGAAAGTTCCTGGGCCATGTGATCAGCAGGCAAGGAATCGAGGCAAACCCGGAGAAGGTCCAGGCCATATTAAATATGGAGGTCCTGAAAGTCAGGAGTGATGTGCAGTGCCTAACGGGCAAGATCGCGGCCCTCGCTAGGTTCGTTTCTAGGCTCACGGACAAGTGCGCGTCGTTTTTCAAACTGCTAAAGAGTCAGCACTGCAAGCTGATCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

184

Amino Acids

20.64

Weight (kDa)

9.2

Isoelectric Point (pI)

25.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_1	PF00078	2 - 119	2.4e-25	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	105
AccI	GTMKAC	2 cut(s)	96, 201
AccII	CGCG	4 cut(s)	53, 236, 461, 503
AciI	CCGC	4 cut(s)	53, 72, 234, 461
AcoI	YGGCCR	1 cut(s)	54
AfiI	CCNNNNNNNGG	3 cut(s)	90, 388, 471
AgsI	TTSAA	2 cut(s)	127, 514
AjnI	CCWGG	2 cut(s)	342, 393
AluBI	AGCT	3 cut(s)	9, 181, 541
AluI	AGCT	3 cut(s)	9, 181, 541
AlwNI	CAGNNNCTG	1 cut(s)	154
AoxI	GGCC	4 cut(s)	54, 346, 396, 462
ApeKI	GCWGC	1 cut(s)	178
AspLEI	GCGC	2 cut(s)	153, 503
AspS9I	GGNCC	4 cut(s)	346, 391, 415, 463
AsuC2I	CCSGG	2 cut(s)	305, 383
AsuHPI	GGTGA	1 cut(s)	70
AvaII	GGWCC	2 cut(s)	391, 415
BbsI	GAAGAC	1 cut(s)	259
BbvI	GCAGC	1 cut(s)	190
BceAI	ACGGC	1 cut(s)	100
BciT130I	CCWGG	2 cut(s)	344, 395
BclI	TGATCA	2 cut(s)	354, 543
BcnI	CCSGG	2 cut(s)	305, 383
BfaI	CTAG	3 cut(s)	471, 483, 550
BfoI	RGCGCY	1 cut(s)	154
BglI	GCCNNNNNGGC	1 cut(s)	450
BisI	GCNGC	3 cut(s)	54, 179, 462
BlpI	GCTNAGC	2 cut(s)	5, 174
BlsI	GCNGC	3 cut(s)	55, 180, 463
Bme1390I	CCNGG	4 cut(s)	305, 344, 383, 395
Bme18I	GGWCC	2 cut(s)	391, 415
BmgT120I	GGNCC	4 cut(s)	346, 391, 415, 463
BmrFI	CCNGG	4 cut(s)	305, 344, 383, 395
BmsI	GCATC	2 cut(s)	7, 102
BpiI	GAAGAC	1 cut(s)	259
Bpu1102I	GCTNAGC	2 cut(s)	5, 174
BpuMI	CCSGG	2 cut(s)	305, 383
BsaAI	YACGTR	1 cut(s)	205
BsaJI	CCNNGG	3 cut(s)	45, 192, 343
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 388, 471
Bse118I	RCCGGY	1 cut(s)	26
BseBI	CCWGG	2 cut(s)	344, 395
BseDI	CCNNGG	3 cut(s)	45, 192, 343
BseGI	GGATG	3 cut(s)	22, 117, 214
BseLI	CCNNNNNNNGG	3 cut(s)	90, 388, 471
BseX3I	CGGCCG	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	190
BseYI	CCCAGC	1 cut(s)	181
BsgI	GTGCAG	1 cut(s)	458
Bsh1236I	CGCG	4 cut(s)	53, 236, 461, 503
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	4 cut(s)	56, 348, 398, 464
BsiEI	CGRYCG	1 cut(s)	57
BsiSI	CCGG	3 cut(s)	27, 305, 383
BslI	CCNNNNNNNGG	3 cut(s)	90, 388, 471
BsmI	GAATGC	2 cut(s)	74, 136
BsnI	GGCC	4 cut(s)	56, 348, 398, 464
Bsp143I	GATC	3 cut(s)	354, 456, 543
Bsp1720I	GCTNAGC	2 cut(s)	5, 174
Bsp19I	CCATGG	2 cut(s)	45, 192
BspACI	CCGC	4 cut(s)	53, 72, 234, 461
BspANI	GGCC	4 cut(s)	56, 348, 398, 464
BspFNI	CGCG	4 cut(s)	53, 236, 461, 503
BsrFI	RCCGGY	1 cut(s)	26
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	3 cut(s)	45, 192, 343
BssMI	GATC	3 cut(s)	354, 456, 543
BssNAI	GTATAC	2 cut(s)	97, 202
BssT1I	CCWWGG	2 cut(s)	45, 192
Bst1107I	GTATAC	2 cut(s)	97, 202
Bst2UI	CCWGG	2 cut(s)	344, 395
Bst4CI	ACNGT	1 cut(s)	290
BstBAI	YACGTR	1 cut(s)	205
BstC8I	GCNNGC	2 cut(s)	362, 539
BstDEI	CTNAG	2 cut(s)	5, 174
BstDSI	CCRYGG	2 cut(s)	45, 192
BstF5I	GGATG	3 cut(s)	22, 117, 214
BstFNI	CGCG	4 cut(s)	53, 236, 461, 503
BstH2I	RGCGCY	1 cut(s)	154
BstHHI	GCGC	2 cut(s)	153, 503
BstKTI	GATC	3 cut(s)	357, 459, 546
BstMBI	GATC	3 cut(s)	354, 456, 543
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 450, 467, 538
BstNI	CCWGG	2 cut(s)	344, 395
BstNSI	RCATGY	2 cut(s)	217, 248
BstSCI	CCNGG	4 cut(s)	303, 342, 381, 393
BstUI	CGCG	4 cut(s)	53, 236, 461, 503
BstV1I	GCAGC	1 cut(s)	190
BstV2I	GAAGAC	1 cut(s)	259
BstZ17I	GTATAC	2 cut(s)	97, 202
BstZI	CGGCCG	1 cut(s)	54
BsuRI	GGCC	4 cut(s)	56, 348, 398, 464
BtgI	CCRYGG	2 cut(s)	45, 192
BtsCI	GGATG	3 cut(s)	22, 117, 214
BtsI	GCAGTG	2 cut(s)	446, 532
BtsIMutI	CAGTG	2 cut(s)	446, 532
Cac8I	GCNNGC	2 cut(s)	362, 539
CaiI	CAGNNNCTG	1 cut(s)	154
CfoI	GCGC	2 cut(s)	153, 503
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	4 cut(s)	346, 391, 415, 463
CseI	GACGC	2 cut(s)	59, 492
CviAII	CATG	6 cut(s)	13, 46, 193, 214, 245, 350
DdeI	CTNAG	2 cut(s)	5, 174
DpnI	GATC	3 cut(s)	356, 458, 545
DpnII	GATC	3 cut(s)	354, 456, 543
EaeI	YGGCCR	1 cut(s)	54
EagI	CGGCCG	1 cut(s)	54
EclXI	CGGCCG	1 cut(s)	54
Eco130I	CCWWGG	2 cut(s)	45, 192
Eco47I	GGWCC	2 cut(s)	391, 415
Eco52I	CGGCCG	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	415
EcoRII	CCWGG	2 cut(s)	342, 393
EcoT14I	CCWWGG	2 cut(s)	45, 192
EcoT22I	ATGCAT	1 cut(s)	22
ErhI	CCWWGG	2 cut(s)	45, 192
FaeI	CATG	6 cut(s)	16, 49, 196, 217, 248, 353
FatI	CATG	6 cut(s)	12, 45, 192, 213, 244, 349
FauNDI	CATATG	1 cut(s)	22
FbaI	TGATCA	2 cut(s)	354, 543
FblI	GTMKAC	2 cut(s)	96, 201
Fnu4HI	GCNGC	3 cut(s)	54, 179, 462
FokI	GGATG	3 cut(s)	29, 124, 221
Fsp4HI	GCNGC	3 cut(s)	54, 179, 462
FspBI	CTAG	3 cut(s)	471, 483, 550
GlaI	GCGC	2 cut(s)	152, 502
GluI	GCNGC	3 cut(s)	54, 179, 462
GsaI	CCCAGC	1 cut(s)	185
HaeII	RGCGCY	1 cut(s)	154
HaeIII	GGCC	4 cut(s)	56, 348, 398, 464
HapII	CCGG	3 cut(s)	27, 305, 383
HgaI	GACGC	2 cut(s)	59, 492
HhaI	GCGC	2 cut(s)	153, 503
Hin1II	CATG	6 cut(s)	16, 49, 196, 217, 248, 353
Hin6I	GCGC	2 cut(s)	151, 501
HinP1I	GCGC	2 cut(s)	151, 501
HinfI	GANTC	2 cut(s)	369, 526
HpaII	CCGG	3 cut(s)	27, 305, 383
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	2 cut(s)	97, 202
Hpy188I	TCNGA	1 cut(s)	39
Hpy188III	TCNNGA	2 cut(s)	418, 427
Hpy8I	GTNNAC	2 cut(s)	97, 202
Hpy99I	CGWCG	2 cut(s)	62, 508
HpyAV	CCTTC	1 cut(s)	382
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	4 cut(s)	20, 134, 439, 537
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 450, 467, 538
HpyF3I	CTNAG	2 cut(s)	5, 174
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	6 cut(s)	16, 49, 196, 217, 248, 353
HspAI	GCGC	2 cut(s)	151, 501
Ksp22I	TGATCA	2 cut(s)	354, 543
Kzo9I	GATC	3 cut(s)	354, 456, 543
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	2 cut(s)	7, 102
MaeI	CTAG	3 cut(s)	471, 483, 550
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	2 cut(s)	29, 187
MalI	GATC	3 cut(s)	356, 458, 545
MboI	GATC	3 cut(s)	354, 456, 543
MboII	GAAGA	3 cut(s)	74, 139, 259
MlyI	GAGTC	1 cut(s)	535
MnlI	CCTC	7 cut(s)	102, 239, 288, 290, 367, 406, 476
Mph1103I	ATGCAT	1 cut(s)	22
MseI	TTAA	2 cut(s)	222, 404
MspA1I	CMGCKG	1 cut(s)	181
MspI	CCGG	3 cut(s)	27, 305, 383
MspR9I	CCNGG	4 cut(s)	305, 344, 383, 395
Mva1269I	GAATGC	2 cut(s)	74, 136
MvaI	CCWGG	2 cut(s)	344, 395
MvnI	CGCG	4 cut(s)	53, 236, 461, 503
MwoI	GCNNNNNNNGC	4 cut(s)	50, 450, 467, 538
NciI	CCSGG	2 cut(s)	305, 383
NcoI	CCATGG	2 cut(s)	45, 192
NdeI	CATATG	1 cut(s)	22
NdeII	GATC	3 cut(s)	354, 456, 543
NlaIII	CATG	6 cut(s)	16, 49, 196, 217, 248, 353
NsiI	ATGCAT	1 cut(s)	22
NspI	RCATGY	2 cut(s)	217, 248
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 474
PctI	GAATGC	2 cut(s)	74, 136
PfeI	GAWTC	1 cut(s)	369
PkrI	GCNGC	3 cut(s)	55, 180, 463
PleI	GAGTC	1 cut(s)	534
PpsI	GAGTC	1 cut(s)	534
Ppu21I	YACGTR	1 cut(s)	205
PpuMI	RGGWCCY	1 cut(s)	415
PsiI	TTATAA	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	415
Psp6I	CCWGG	2 cut(s)	342, 393
PspFI	CCCAGC	1 cut(s)	181
PspGI	CCWGG	2 cut(s)	342, 393
PspPI	GGNCC	4 cut(s)	346, 391, 415, 463
PspPPI	RGGWCCY	1 cut(s)	415
PstNI	CAGNNNCTG	1 cut(s)	154
PvuII	CAGCTG	1 cut(s)	181
SaqAI	TTAA	2 cut(s)	222, 404
SatI	GCNGC	3 cut(s)	54, 179, 462
Sau3AI	GATC	3 cut(s)	354, 456, 543
Sau96I	GGNCC	4 cut(s)	346, 391, 415, 463
SchI	GAGTC	1 cut(s)	535
ScrFI	CCNGG	4 cut(s)	305, 344, 383, 395
SetI	ASST	9 cut(s)	11, 146, 183, 207, 258, 393, 417, 476, 543
SfaNI	GCATC	2 cut(s)	7, 102
SinI	GGWCC	2 cut(s)	391, 415
SsiI	CCGC	4 cut(s)	53, 72, 234, 461
SspMI	CTAG	3 cut(s)	471, 483, 550
StyD4I	CCNGG	4 cut(s)	303, 342, 381, 393
StyI	CCWWGG	2 cut(s)	45, 192
TaaI	ACNGT	1 cut(s)	290
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	2 cut(s)	282, 372
TauI	GCSGC	2 cut(s)	56, 464
TfiI	GAWTC	1 cut(s)	369
Tru1I	TTAA	2 cut(s)	222, 404
Tru9I	TTAA	2 cut(s)	222, 404
TscAI	CASTG	2 cut(s)	446, 539
TseI	GCWGC	1 cut(s)	178
TspDTI	ATGAA	1 cut(s)	173
TspGWI	ACGGA	1 cut(s)	506
TspRI	CASTG	2 cut(s)	446, 539
VpaK11BI	GGWCC	2 cut(s)	391, 415
XceI	RCATGY	2 cut(s)	217, 248
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XmiI	GTMKAC	2 cut(s)	96, 201
XspI	CTAG	3 cut(s)	471, 483, 550
Zsp2I	ATGCAT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.