Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

46382941 .. 46384749

Gene Structure 1809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G023730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1560 bp

ATGCGCCTAAACCCAGAAAAATGTTTCTTTGCAGTCACCGCTAGCAAATTTCTCGGTTACATCGTCAGCGAGCGTGGTATCGAGGCCAACCCGGATAAGGTGCATGCCATCCTTAACCTGGCGAACCCCGAGTATAAGGTGGACAAGGTCATTGACTGGAACCCAGATTGTCAGGCGGCGTTCCAGGGCCTAAAGGAATATCTGGTGGCGGTCCCTCTCCTTTCTGTCCCTGTGCAAGGAGAGACACTATTCATATATCTAGCGGTCTCGGCAACGGCAATAAGTTGCGCCATTGTCCGGCGGGAAGGCCAGGATGAGCTCCCAGTATTCTACGCTGGCAGAGGCATGAACGGAGCAGAAACAAGGTATTCACCGTTGGAACAGCTGGCCCTCGCACTTATCGTTGCCGCCAGACGCCTCCGGCAATATTTCCAGGCTCACACGATCCATGTATTAACCAATCAACCGCTGAGGCAGGTGATGCAGAACCCTGAACACTCGGGGCGCCTCAGTAAGTGGGCGATTGAGCTCAGCGAATTTGACATAGAATACAAGCCAAGAACCGCCATGAAGGGCCAGGCAGCCAGCGGCGCCGGAGTCATCTTAACCGGACCCGGGGGACTGAACGCAGAGTACGCGTTGAAATTCAACTTCAAAGCTTCAAACAATATGGCGGAGTACGAGGCGCTCATCGCCGGTCTACTCCTCGCCATTGACTCAGGAGCTGACAACGTCAACATATTCAGCGACTCCCAACTAGTCGTCAACCAGGTCAACGACAGCTTCCAAGCCAAGGACCAGCAGCTAGCGGCATATTTGGGGTACGTCAAAACGTTGCTAAAAAAGTTCAAATTTCACACAATCACACAAATCCCCAGGGAAAAGAACGCCAAGGCTGATTCACTGGCGAGACTGGCAACCGCCCAAGCGCATCAGAGTCCAGCGGACACAAGGGTGGAGTATCTTGACAAGCCAAGTATCACAAAGACCCTGGCGGAAATCTTCAACGTTCAGGTCAACCCCAGCTGGATGGACGAGATCATTACATATAAACGCAACGGAACGTTGCCAGAAGATAAGGTCCAGGCAAGACAGCTCAAGCGAAGAGCAACCCGCTACAACATCCAGTACGGCAAGCTTTACCGCCAGGGATTCACCCATCCTAACCTCCGCTGTCTAACCCCAGAGGAGGGAAAGGTTGTCCTAGCAGAAATCCATGGCGGAGAATGTGGAAACCACTCGGGCGCCAGATCCCTGGCCAACCGCACAATGCGACAAGGCTATTTCTGGCCCACACTTGGTGATGACGCCCGGCGGATTTCGAGGTCTTGCCACAAATGCCAACATTTTGCATATCTCCCACACGCACCAGCGGAACCACTGTCAATCATCGTGGGCCCATGGATTCATTCCACGTGGGGCCTTGATCTGATGGGAAAGTTCCAAACTGCCAAGGGTCAGTTCAAATACATCATTGTTGCCATTGATTACAACAGCAAGTGGATAGAGGCGGAGCCACTAACGGCAATAACTACCGCCAAGGTAATTCGCTTCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

519

Amino Acids

58.05

Weight (kDa)

9.12

Isoelectric Point (pI)

33.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RT_RNaseH_2	PF17919	53 - 151	3.7e-16	RNase H-like domain found in reverse transcriptase
RT_RNaseH	PF17917	82 - 180	2.9e-16	RNase H-like domain found in reverse transcriptase
RVT_3	PF13456	191 - 305	3.3e-20	Reverse transcriptase-like
Integrase_H2C2	PF17921	399 - 449	7.1e-08	Integrase zinc binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	466
Acc36I	ACCTGC	1 cut(s)	466
AccB1I	GGYRCC	3 cut(s)	504, 590, 1244
AccI	GTMKAC	1 cut(s)	700
AccII	CGCG	1 cut(s)	638
AclI	AACGTT	3 cut(s)	833, 1008, 1064
AclWI	GGATC	2 cut(s)	439, 1245
AcoI	YGGCCR	1 cut(s)	1257
AcsI	RAATTY	4 cut(s)	47, 536, 644, 851
AcvI	CACGTG	1 cut(s)	1416
AcyI	GRCGYC	5 cut(s)	415, 505, 591, 1245, 1308
AdeI	CACNNNGTG	1 cut(s)	1301
AfaI	GTAC	4 cut(s)	635, 680, 824, 1130
AfiI	CCNNNNNNNGG	9 cut(s)	97, 118, 236, 297, 615, 793, 1189, 1190, 1298
AflIII	ACRYGT	1 cut(s)	636
AgsI	TTSAA	7 cut(s)	643, 649, 655, 663, 850, 1006, 1465
AhlI	ACTAGT	1 cut(s)	757
AjuI	GAANNNNNNNTTGG	2 cut(s)	1445, 1477
AleI	CACNNNNGTG	1 cut(s)	953
Alw21I	GWGCWC	2 cut(s)	321, 531
Alw26I	GTCTC	3 cut(s)	236, 271, 904
AlwI	GGATC	2 cut(s)	439, 1245
AlwNI	CAGNNNCTG	1 cut(s)	725
Ama87I	CYCGRG	4 cut(s)	128, 499, 614, 1240
AoxI	GGCC	9 cut(s)	84, 187, 307, 387, 574, 1257, 1289, 1396, 1420
ApaI	GGGCCC	1 cut(s)	1400
ApeKI	GCWGC	2 cut(s)	581, 802
ApoI	RAATTY	4 cut(s)	47, 536, 644, 851
AspLEI	GCGC	7 cut(s)	6, 290, 507, 593, 688, 931, 1247
AsuC2I	CCSGG	4 cut(s)	92, 615, 616, 1312
AsuHPI	GGTGA	5 cut(s)	28, 363, 490, 1147, 1313
AsuNHI	GCTAGC	2 cut(s)	41, 805
AvaI	CYCGRG	4 cut(s)	128, 499, 614, 1240
AvaII	GGWCC	4 cut(s)	211, 611, 796, 1081
BaeGI	GKGCMC	1 cut(s)	1400
BalI	TGGCCA	1 cut(s)	1259
BanI	GGYRCC	3 cut(s)	504, 590, 1244
BanII	GRGCYC	3 cut(s)	321, 531, 1400
BbrPI	CACGTG	1 cut(s)	1416
Bbv12I	GWGCWC	2 cut(s)	321, 531
BbvCI	CCTCAGC	1 cut(s)	470
BbvI	GCAGC	2 cut(s)	593, 814
BccI	CCATC	4 cut(s)	116, 1024, 1167, 1426
BceAI	ACGGC	3 cut(s)	291, 1147, 1539
BcgI	CGANNNNNNTGC	2 cut(s)	34, 68
BcnI	CCSGG	4 cut(s)	92, 615, 616, 1312
BcoDI	GTCTC	3 cut(s)	236, 271, 904
BcuI	ACTAGT	1 cut(s)	757
BfaI	CTAG	6 cut(s)	42, 260, 758, 806, 1205, 1558
BfoI	RGCGCY	4 cut(s)	508, 594, 689, 1248
BfuAI	ACCTGC	1 cut(s)	466
BisI	GCNGC	6 cut(s)	177, 408, 582, 589, 803, 810
BlpI	GCTNAGC	1 cut(s)	530
BlsI	GCNGC	6 cut(s)	178, 409, 583, 590, 804, 811
Bme18I	GGWCC	4 cut(s)	211, 611, 796, 1081
BmeT110I	CYCGRG	4 cut(s)	128, 499, 614, 1240
BmrI	ACTGGG	1 cut(s)	317
BmsI	GCATC	2 cut(s)	471, 940
BmtI	GCTAGC	2 cut(s)	45, 809
BmuI	ACTGGG	1 cut(s)	317
Bpu10I	CCTNAGC	1 cut(s)	470
Bpu1102I	GCTNAGC	1 cut(s)	530
BpuEI	CTTGAG	1 cut(s)	1082
BpuMI	CCSGG	4 cut(s)	92, 615, 616, 1312
BsaAI	YACGTR	1 cut(s)	1416
BsaHI	GRCGYC	5 cut(s)	415, 505, 591, 1245, 1308
BsaI	GGTCTC	1 cut(s)	271
BsaWI	WCCGGW	1 cut(s)	608
Bsc4I	CCNNNNNNNGG	9 cut(s)	97, 118, 236, 297, 615, 793, 1189, 1190, 1298
Bse118I	RCCGGY	1 cut(s)	695
Bse1I	ACTGG	5 cut(s)	161, 323, 909, 918, 1126
BseGI	GGATG	5 cut(s)	108, 319, 1035, 1122, 1159
BseLI	CCNNNNNNNGG	9 cut(s)	97, 118, 236, 297, 615, 793, 1189, 1190, 1298
BseMII	CTCAG	4 cut(s)	461, 523, 544, 732
BseNI	ACTGG	5 cut(s)	161, 323, 909, 918, 1126
BseRI	GAGGAG	2 cut(s)	695, 1202
BseSI	GKGCMC	1 cut(s)	1400
BseXI	GCAGC	2 cut(s)	593, 814
BseYI	CCCAGC	1 cut(s)	1022
Bsh1236I	CGCG	1 cut(s)	638
BshFI	GGCC	9 cut(s)	86, 189, 309, 389, 576, 1259, 1291, 1398, 1422
BshNI	GGYRCC	3 cut(s)	504, 590, 1244
BsiHKAI	GWGCWC	2 cut(s)	321, 531
BsiHKCI	CYCGRG	4 cut(s)	128, 499, 614, 1240
BsiSI	CCGG	8 cut(s)	92, 298, 421, 594, 609, 615, 696, 1312
BslFI	GGGAC	3 cut(s)	197, 212, 633
BslI	CCNNNNNNNGG	9 cut(s)	97, 118, 236, 297, 615, 793, 1189, 1190, 1298
BsmAI	GTCTC	3 cut(s)	236, 271, 904
BsmFI	GGGAC	3 cut(s)	197, 212, 633
BsnI	GGCC	9 cut(s)	86, 189, 309, 389, 576, 1259, 1291, 1398, 1422
Bso31I	GGTCTC	1 cut(s)	271
BsoBI	CYCGRG	4 cut(s)	128, 499, 614, 1240
Bsp120I	GGGCCC	1 cut(s)	1396
Bsp1286I	GDGCHC	3 cut(s)	321, 531, 1400
Bsp143I	GATC	4 cut(s)	444, 1038, 1250, 1426
Bsp1720I	GCTNAGC	1 cut(s)	530
Bsp19I	CCATGG	2 cut(s)	1216, 1400
BspANI	GGCC	9 cut(s)	86, 189, 309, 389, 576, 1259, 1291, 1398, 1422
BspCNI	CTCAG	4 cut(s)	462, 522, 543, 731
BspFNI	CGCG	1 cut(s)	638
BspMI	ACCTGC	1 cut(s)	466
BspOI	GCTAGC	2 cut(s)	45, 809
BspPI	GGATC	2 cut(s)	439, 1245
BspQI	GCTCTTC	1 cut(s)	1099
BspT107I	GGYRCC	3 cut(s)	504, 590, 1244
BspTNI	GGTCTC	1 cut(s)	271
BsrFI	RCCGGY	1 cut(s)	695
BsrI	ACTGG	5 cut(s)	161, 323, 909, 918, 1126
BssAI	RCCGGY	1 cut(s)	695
BssMI	GATC	4 cut(s)	444, 1038, 1250, 1426
BssNI	GRCGYC	5 cut(s)	415, 505, 591, 1245, 1308
BssT1I	CCWWGG	6 cut(s)	792, 891, 1216, 1400, 1452, 1539
Bst4CI	ACNGT	2 cut(s)	375, 1383
Bst6I	CTCTTC	1 cut(s)	1099
BstACI	GRCGYC	5 cut(s)	415, 505, 591, 1245, 1308
BstAPI	GCANNNNNTGC	1 cut(s)	481
BstBAI	YACGTR	1 cut(s)	1416
BstC8I	GCNNGC	8 cut(s)	43, 71, 105, 337, 387, 586, 807, 1136
BstDEI	CTNAG	4 cut(s)	470, 509, 530, 718
BstDSI	CCRYGG	2 cut(s)	1216, 1400
BstENI	CCTNNNNNAGG	1 cut(s)	234
BstF5I	GGATG	5 cut(s)	108, 319, 1035, 1122, 1159
BstFNI	CGCG	1 cut(s)	638
BstH2I	RGCGCY	4 cut(s)	508, 594, 689, 1248
BstHHI	GCGC	7 cut(s)	6, 290, 507, 593, 688, 931, 1247
BstKTI	GATC	4 cut(s)	447, 1041, 1253, 1429
BstMAI	GTCTC	3 cut(s)	236, 271, 904
BstMBI	GATC	4 cut(s)	444, 1038, 1250, 1426
BstMWI	GCNNNNNNNGC	8 cut(s)	38, 269, 481, 590, 635, 692, 914, 1338
BstNSI	RCATGY	1 cut(s)	107
BstSLI	GKGCMC	1 cut(s)	1400
BstUI	CGCG	1 cut(s)	638
BstV1I	GCAGC	2 cut(s)	593, 814
BstX2I	RGATCY	1 cut(s)	1250
BstXI	CCANNNNNNTGG	2 cut(s)	1030, 1255
BstYI	RGATCY	1 cut(s)	1250
BsuRI	GGCC	9 cut(s)	86, 189, 309, 389, 576, 1259, 1291, 1398, 1422
BtgI	CCRYGG	2 cut(s)	1216, 1400
BtgZI	GCGATG	1 cut(s)	676
BtsCI	GGATG	5 cut(s)	108, 319, 1035, 1122, 1159
BtsIMutI	CAGTG	2 cut(s)	902, 1379
BveI	ACCTGC	1 cut(s)	466
Cac8I	GCNNGC	8 cut(s)	43, 71, 105, 337, 387, 586, 807, 1136
CaiI	CAGNNNCTG	1 cut(s)	725
CfoI	GCGC	7 cut(s)	6, 290, 507, 593, 688, 931, 1247
Cfr10I	RCCGGY	1 cut(s)	695
Cfr9I	CCCGGG	1 cut(s)	614
CseI	GACGC	2 cut(s)	423, 1316
CsiI	ACCWGGT	1 cut(s)	768
Csp6I	GTAC	4 cut(s)	634, 679, 823, 1129
CspCI	CAANNNNNGTGG	2 cut(s)	1374, 1409
CviAII	CATG	6 cut(s)	104, 346, 449, 568, 1217, 1401
CviQI	GTAC	4 cut(s)	634, 679, 823, 1129
DdeI	CTNAG	4 cut(s)	470, 509, 530, 718
DinI	GGCGCC	3 cut(s)	506, 592, 1246
DpnI	GATC	4 cut(s)	446, 1040, 1252, 1428
DpnII	GATC	4 cut(s)	444, 1038, 1250, 1426
DraIII	CACNNNGTG	1 cut(s)	1301
EaeI	YGGCCR	1 cut(s)	1257
Eam1104I	CTCTTC	1 cut(s)	1099
EarI	CTCTTC	1 cut(s)	1099
EciI	GGCGGA	5 cut(s)	689, 1010, 1236, 1330, 1526
Ecl136II	GAGCTC	2 cut(s)	319, 529
Eco130I	CCWWGG	6 cut(s)	792, 891, 1216, 1400, 1452, 1539
Eco24I	GRGCYC	3 cut(s)	321, 531, 1400
Eco31I	GGTCTC	1 cut(s)	271
Eco47I	GGWCC	4 cut(s)	211, 611, 796, 1081
Eco53kI	GAGCTC	2 cut(s)	319, 529
Eco72I	CACGTG	1 cut(s)	1416
Eco88I	CYCGRG	4 cut(s)	128, 499, 614, 1240
EcoICRI	GAGCTC	2 cut(s)	319, 529
EcoNI	CCTNNNNNAGG	1 cut(s)	234
EcoO109I	RGGNCCY	2 cut(s)	187, 1420
EcoT14I	CCWWGG	6 cut(s)	792, 891, 1216, 1400, 1452, 1539
EcoT38I	GRGCYC	3 cut(s)	321, 531, 1400
EgeI	GGCGCC	3 cut(s)	506, 592, 1246
EheI	GGCGCC	3 cut(s)	506, 592, 1246
ErhI	CCWWGG	6 cut(s)	792, 891, 1216, 1400, 1452, 1539
FaeI	CATG	6 cut(s)	107, 349, 452, 571, 1220, 1404
FaqI	GGGAC	3 cut(s)	197, 212, 633
FatI	CATG	6 cut(s)	103, 345, 448, 567, 1216, 1400
FauI	CCCGC	2 cut(s)	294, 1121
FblI	GTMKAC	1 cut(s)	700
Fnu4HI	GCNGC	6 cut(s)	177, 408, 582, 589, 803, 810
FokI	GGATG	5 cut(s)	95, 326, 1042, 1109, 1146
FriOI	GRGCYC	3 cut(s)	321, 531, 1400
Fsp4HI	GCNGC	6 cut(s)	177, 408, 582, 589, 803, 810
FspBI	CTAG	6 cut(s)	42, 260, 758, 806, 1205, 1558
GlaI	GCGC	7 cut(s)	5, 289, 506, 592, 687, 930, 1246
GluI	GCNGC	6 cut(s)	177, 408, 582, 589, 803, 810
GsaI	CCCAGC	1 cut(s)	1026
HaeII	RGCGCY	4 cut(s)	508, 594, 689, 1248
HaeIII	GGCC	9 cut(s)	86, 189, 309, 389, 576, 1259, 1291, 1398, 1422
HapII	CCGG	8 cut(s)	92, 298, 421, 594, 609, 615, 696, 1312
HgaI	GACGC	2 cut(s)	423, 1316
HhaI	GCGC	7 cut(s)	6, 290, 507, 593, 688, 931, 1247
Hin1I	GRCGYC	5 cut(s)	415, 505, 591, 1245, 1308
Hin1II	CATG	6 cut(s)	107, 349, 452, 571, 1220, 1404
Hin6I	GCGC	7 cut(s)	4, 288, 505, 591, 686, 929, 1245
HinP1I	GCGC	7 cut(s)	4, 288, 505, 591, 686, 929, 1245
HincII	GTYRAC	4 cut(s)	736, 766, 775, 1018
HindII	GTYRAC	4 cut(s)	736, 766, 775, 1018
HindIII	AAGCTT	2 cut(s)	657, 1136
HinfI	GANTC	7 cut(s)	597, 716, 749, 899, 937, 1152, 1405
HpaII	CCGG	8 cut(s)	92, 298, 421, 594, 609, 615, 696, 1312
HphI	GGTGA	5 cut(s)	28, 363, 490, 1147, 1313
Hpy166II	GTNNAC	6 cut(s)	142, 701, 736, 766, 775, 1018
Hpy188I	TCNGA	2 cut(s)	936, 1431
Hpy188III	TCNNGA	2 cut(s)	720, 965
Hpy8I	GTNNAC	6 cut(s)	142, 701, 736, 766, 775, 1018
HpyAV	CCTTC	2 cut(s)	299, 565
HpyCH4III	ACNGT	2 cut(s)	375, 1383
HpyCH4IV	ACGT	6 cut(s)	732, 825, 833, 1008, 1064, 1415
HpyCH4V	TGCA	5 cut(s)	32, 103, 235, 484, 1352
HpyF10VI	GCNNNNNNNGC	8 cut(s)	38, 269, 481, 590, 635, 692, 914, 1338
HpyF3I	CTNAG	4 cut(s)	470, 509, 530, 718
HpySE526I	ACGT	6 cut(s)	732, 825, 833, 1008, 1064, 1415
Hsp92I	GRCGYC	5 cut(s)	415, 505, 591, 1245, 1308
Hsp92II	CATG	6 cut(s)	107, 349, 452, 571, 1220, 1404
HspAI	GCGC	7 cut(s)	4, 288, 505, 591, 686, 929, 1245
KasI	GGCGCC	3 cut(s)	504, 590, 1244
Kzo9I	GATC	4 cut(s)	444, 1038, 1250, 1426
LguI	GCTCTTC	1 cut(s)	1099
LmnI	GCTCC	4 cut(s)	324, 353, 722, 1513
Lsp1109I	GCAGC	2 cut(s)	593, 814
LweI	GCATC	2 cut(s)	471, 940
MabI	ACCWGGT	1 cut(s)	768
MaeI	CTAG	6 cut(s)	42, 260, 758, 806, 1205, 1558
MaeII	ACGT	6 cut(s)	732, 825, 833, 1008, 1064, 1415
MaeIII	GTNAC	2 cut(s)	34, 56
MalI	GATC	4 cut(s)	446, 1040, 1252, 1428
MboI	GATC	4 cut(s)	444, 1038, 1250, 1426
MboII	GAAGA	3 cut(s)	994, 1085, 1116
MflI	RGATCY	1 cut(s)	1250
MhlI	GDGCHC	3 cut(s)	321, 531, 1400
MlsI	TGGCCA	1 cut(s)	1259
MluCI	AATT	5 cut(s)	47, 536, 644, 851, 1545
MluI	ACGCGT	1 cut(s)	636
MluNI	TGGCCA	1 cut(s)	1259
Mly113I	GGCGCC	3 cut(s)	505, 591, 1245
MlyI	GAGTC	4 cut(s)	606, 710, 743, 946
MmeI	TCCRAC	1 cut(s)	357
Mox20I	TGGCCA	1 cut(s)	1259
MscI	TGGCCA	1 cut(s)	1259
MseI	TTAA	3 cut(s)	114, 455, 605
MslI	CAYNNNNRTG	1 cut(s)	953
Msp20I	TGGCCA	1 cut(s)	1259
MspA1I	CMGCKG	7 cut(s)	385, 469, 588, 944, 1026, 1173, 1373
MspI	CCGG	8 cut(s)	92, 298, 421, 594, 609, 615, 696, 1312
MvnI	CGCG	1 cut(s)	638
MwoI	GCNNNNNNNGC	8 cut(s)	38, 269, 481, 590, 635, 692, 914, 1338
NarI	GGCGCC	3 cut(s)	505, 591, 1245
NciI	CCSGG	4 cut(s)	92, 615, 616, 1312
NcoI	CCATGG	2 cut(s)	1216, 1400
NdeII	GATC	4 cut(s)	444, 1038, 1250, 1426
NheI	GCTAGC	2 cut(s)	41, 805
NlaIII	CATG	6 cut(s)	107, 349, 452, 571, 1220, 1404
NmeAIII	GCCGAG	1 cut(s)	248
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	1 cut(s)	107
OliI	CACNNNNGTG	1 cut(s)	953
PaeI	GCATGC	1 cut(s)	107
PaqCI	CACCTGC	1 cut(s)	466
PasI	CCCWGGG	1 cut(s)	876
PciSI	GCTCTTC	1 cut(s)	1099
PcsI	WCGNNNNNNNCGW	2 cut(s)	60, 399
PfeI	GAWTC	3 cut(s)	899, 1152, 1405
PflFI	GACNNNGTC	2 cut(s)	146, 731
PkrI	GCNGC	6 cut(s)	178, 409, 583, 590, 804, 811
PleI	GAGTC	4 cut(s)	605, 710, 743, 945
PluTI	GGCGCC	3 cut(s)	508, 594, 1248
PmaCI	CACGTG	1 cut(s)	1416
PmlI	CACGTG	1 cut(s)	1416
PpsI	GAGTC	4 cut(s)	605, 710, 743, 945
Ppu21I	YACGTR	1 cut(s)	1416
Psp124BI	GAGCTC	2 cut(s)	321, 531
Psp1406I	AACGTT	3 cut(s)	833, 1008, 1064
PspCI	CACGTG	1 cut(s)	1416
PspFI	CCCAGC	1 cut(s)	1022
PspOMI	GGGCCC	1 cut(s)	1396
PsrI	GAACNNNNNNTAC	2 cut(s)	617, 649
PstNI	CAGNNNCTG	1 cut(s)	725
PsuI	RGATCY	1 cut(s)	1250
PsyI	GACNNNGTC	2 cut(s)	146, 731
PvuII	CAGCTG	2 cut(s)	385, 1026
RsaI	GTAC	4 cut(s)	635, 680, 824, 1130
RsaNI	GTAC	4 cut(s)	634, 679, 823, 1129
RseI	CAYNNNNRTG	1 cut(s)	953
SacI	GAGCTC	2 cut(s)	321, 531
SapI	GCTCTTC	1 cut(s)	1099
SaqAI	TTAA	3 cut(s)	114, 455, 605
SatI	GCNGC	6 cut(s)	177, 408, 582, 589, 803, 810
Sau3AI	GATC	4 cut(s)	444, 1038, 1250, 1426
SchI	GAGTC	4 cut(s)	606, 710, 743, 946
SduI	GDGCHC	3 cut(s)	321, 531, 1400
SexAI	ACCWGGT	1 cut(s)	768
SfaNI	GCATC	2 cut(s)	471, 940
SfoI	GGCGCC	3 cut(s)	506, 592, 1246
SinI	GGWCC	4 cut(s)	211, 611, 796, 1081
SmaI	CCCGGG	1 cut(s)	616
SmiMI	CAYNNNNRTG	1 cut(s)	953
SmlI	CTYRAG	1 cut(s)	1097
SmoI	CTYRAG	1 cut(s)	1097
SpeI	ACTAGT	1 cut(s)	757
SphI	GCATGC	1 cut(s)	107
Sse9I	AATT	5 cut(s)	47, 536, 644, 851, 1545
SspDI	GGCGCC	3 cut(s)	504, 590, 1244
SspI	AATATT	1 cut(s)	428
SspMI	CTAG	6 cut(s)	42, 260, 758, 806, 1205, 1558
SstI	GAGCTC	2 cut(s)	321, 531
StyI	CCWWGG	6 cut(s)	792, 891, 1216, 1400, 1452, 1539
TaaI	ACNGT	2 cut(s)	375, 1383
TaiI	ACGT	6 cut(s)	735, 828, 836, 1011, 1067, 1418
TaqI	TCGA	2 cut(s)	81, 1322
TasI	AATT	5 cut(s)	47, 536, 644, 851, 1545
TauI	GCSGC	4 cut(s)	179, 410, 591, 812
TfiI	GAWTC	3 cut(s)	899, 1152, 1405
Tru1I	TTAA	3 cut(s)	114, 455, 605
Tru9I	TTAA	3 cut(s)	114, 455, 605
TscAI	CASTG	2 cut(s)	909, 1386
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	2 cut(s)	581, 802
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	4 cut(s)	241, 362, 584, 1397
TspGWI	ACGGA	2 cut(s)	366, 1074
TspMI	CCCGGG	1 cut(s)	614
TspRI	CASTG	2 cut(s)	909, 1386
Tth111I	GACNNNGTC	2 cut(s)	146, 731
VpaK11BI	GGWCC	4 cut(s)	211, 611, 796, 1081
XagI	CCTNNNNNAGG	1 cut(s)	234
XapI	RAATTY	4 cut(s)	47, 536, 644, 851
XceI	RCATGY	1 cut(s)	107
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115
XmaI	CCCGGG	1 cut(s)	614
XmiI	GTMKAC	1 cut(s)	700
XspI	CTAG	6 cut(s)	42, 260, 758, 806, 1205, 1558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.