Rmu_sc0000509.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000509.1
OG0000250
Physical Location & Seq
Reverse (-)
2132 .. 2695
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000509.1_g000002.1.cds

Sequence Viewer

Length: 564 bp
atggtacccaagaaatcatcaagcacttggaatatgtggttgactacacaaacctcaatctggcatgccccaaggatagcttgcatcttcccaaatatatcaactcaatcgggcataccccaagtacagcacttcactagcgtgacaattgctcaaataccgaggaccaagaataataaggctgatgctctagccaaactcgcagctgctacaccaagtatatcttacgatgccacaaaggtggaaatattagttagggctgggcacggtcccagaccggcaccagttttacagggaccgggaccgggaccggtaattccacttcgggccggttttgcagttgcacaaaacaaggaccgggataagcccggaccggtaattgttttagaaggaccgggaccggaaccgggaccgaaaatcttacttcgggcctggaccgtagttgcatataacaaggaccgggataaacccggaccgggacaaagccggaccgtttttcgggtttccggttccagtcaatctttgctgcttgacctgcttctgtttagagagtataaagagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

20.23

Weight (kDa)

10.16

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000250)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica Prupe.6G166700_v2.0.a1
pyrus_communis pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis RchiOBHm_Chr5g0018261
rosa_laevigata RLG00000022447
rosa_multiflora Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa Rorug02G0381000
rosa_samantha Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 543
Acc65I GGTACC 1 cut(s) 4
AccB1I GGYRCC 2 cut(s) 4, 280
AfaI GTAC 2 cut(s) 6, 126
AfiI CCNNNNNNNGG 5 cut(s) 60, 305, 407, 476, 498
AgeI ACCGGT 2 cut(s) 310, 373
AjnI CCWGG 1 cut(s) 431
AleI CACNNNNGTG 2 cut(s) 140, 239
AluBI AGCT 2 cut(s) 80, 206
AluI AGCT 2 cut(s) 80, 206
AoxI GGCC 2 cut(s) 327, 429
ApeKI GCWGC 3 cut(s) 203, 206, 526
AsiGI ACCGGT 2 cut(s) 310, 373
Asp718I GGTACC 1 cut(s) 4
AsuC2I CCSGG 9 cut(s) 300, 306, 359, 369, 396, 408, 461, 471, 477
BaeGI GKGCMC 1 cut(s) 267
BanI GGYRCC 2 cut(s) 4, 280
BarI GAAGNNNNNNTAC 2 cut(s) 306, 338
BbvI GCAGC 3 cut(s) 193, 215, 513
BciT130I CCWGG 1 cut(s) 433
BcnI CCSGG 9 cut(s) 300, 306, 359, 369, 396, 408, 461, 471, 477
BfaI CTAG 2 cut(s) 138, 191
BfuAI ACCTGC 1 cut(s) 543
BisI GCNGC 3 cut(s) 204, 207, 527
BlsI GCNGC 3 cut(s) 205, 208, 528
BmsI GCATC 3 cut(s) 93, 175, 220
BpuMI CCSGG 9 cut(s) 300, 306, 359, 369, 396, 408, 461, 471, 477
BsaJI CCNNGG 2 cut(s) 71, 161
BsaWI WCCGGW 4 cut(s) 310, 373, 400, 506
Bsc4I CCNNNNNNNGG 5 cut(s) 60, 305, 407, 476, 498
Bse118I RCCGGY 4 cut(s) 277, 310, 329, 373
Bse1I ACTGG 2 cut(s) 284, 513
BseBI CCWGG 1 cut(s) 433
BseDI CCNNGG 2 cut(s) 71, 161
BseLI CCNNNNNNNGG 5 cut(s) 60, 305, 407, 476, 498
BseNI ACTGG 2 cut(s) 284, 513
BseSI GKGCMC 1 cut(s) 267
BseXI GCAGC 3 cut(s) 193, 215, 513
BseYI CCCAGC 1 cut(s) 260
BshFI GGCC 2 cut(s) 329, 431
BshNI GGYRCC 2 cut(s) 4, 280
BshTI ACCGGT 2 cut(s) 310, 373
BslFI GGGAC 7 cut(s) 255, 309, 315, 321, 411, 423, 492
BslI CCNNNNNNNGG 5 cut(s) 60, 305, 407, 476, 498
BsmFI GGGAC 7 cut(s) 255, 309, 315, 321, 411, 423, 492
BsnI GGCC 2 cut(s) 329, 431
Bsp1286I GDGCHC 1 cut(s) 267
BspANI GGCC 2 cut(s) 329, 431
BspMI ACCTGC 1 cut(s) 543
BspT107I GGYRCC 2 cut(s) 4, 280
BsrFI RCCGGY 4 cut(s) 277, 310, 329, 373
BsrI ACTGG 2 cut(s) 284, 513
BssAI RCCGGY 4 cut(s) 277, 310, 329, 373
BssECI CCNNGG 2 cut(s) 71, 161
BssT1I CCWWGG 1 cut(s) 71
Bst2UI CCWGG 1 cut(s) 433
Bst4CI ACNGT 3 cut(s) 269, 439, 493
BstC8I GCNNGC 2 cut(s) 66, 82
BstMWI GCNNNNNNNGC 3 cut(s) 200, 335, 535
BstNI CCWGG 1 cut(s) 433
BstNSI RCATGY 1 cut(s) 68
BstSLI GKGCMC 1 cut(s) 267
BstV1I GCAGC 3 cut(s) 193, 215, 513
BstXI CCANNNNNNTGG 1 cut(s) 241
BsuRI GGCC 2 cut(s) 329, 431
BveI ACCTGC 1 cut(s) 543
Cac8I GCNNGC 2 cut(s) 66, 82
Cfr10I RCCGGY 4 cut(s) 277, 310, 329, 373
CpoI CGGWCCG 3 cut(s) 371, 473, 489
Csp6I GTAC 2 cut(s) 5, 125
CspAI ACCGGT 2 cut(s) 310, 373
CspI CGGWCCG 3 cut(s) 371, 473, 489
CviAII CATG 1 cut(s) 65
CviJI RGCY 9 cut(s) 80, 182, 194, 206, 260, 329, 367, 431, 486
CviKI_1 RGCY 9 cut(s) 80, 182, 194, 206, 260, 329, 367, 431, 486
CviQI GTAC 2 cut(s) 5, 125
Eco130I CCWWGG 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 431
EcoT14I CCWWGG 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 71
FaeI CATG 1 cut(s) 68
FaiI YATR 8 cut(s) 35, 66, 98, 116, 221, 448, 450, 555
FalI AAGNNNNNCTT 4 cut(s) 64, 96, 208, 240
FaqI GGGAC 7 cut(s) 255, 309, 315, 321, 411, 423, 492
FatI CATG 1 cut(s) 64
Fnu4HI GCNGC 3 cut(s) 204, 207, 527
Fsp4HI GCNGC 3 cut(s) 204, 207, 527
FspBI CTAG 2 cut(s) 138, 191
GluI GCNGC 3 cut(s) 204, 207, 527
GsaI CCCAGC 1 cut(s) 264
HaeIII GGCC 2 cut(s) 329, 431
Hin1II CATG 1 cut(s) 68
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
Hpy166II GTNNAC 1 cut(s) 42
Hpy8I GTNNAC 1 cut(s) 42
HpyAV CCTTC 1 cut(s) 383
HpyCH4III ACNGT 3 cut(s) 269, 439, 493
HpyCH4V TGCA 4 cut(s) 84, 338, 344, 446
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 335, 535
Hsp92II CATG 1 cut(s) 68
KpnI GGTACC 1 cut(s) 8
Lsp1109I GCAGC 3 cut(s) 193, 215, 513
LweI GCATC 3 cut(s) 93, 175, 220
MaeI CTAG 2 cut(s) 138, 191
MaeIII GTNAC 1 cut(s) 142
MboII GAAGA 1 cut(s) 79
MfeI CAATTG 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 3 cut(s) 147, 315, 378
MnlI CCTC 2 cut(s) 64, 156
MslI CAYNNNNRTG 2 cut(s) 140, 239
MspA1I CMGCKG 1 cut(s) 206
MunI CAATTG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 433
MwoI GCNNNNNNNGC 3 cut(s) 200, 335, 535
NciI CCSGG 9 cut(s) 300, 306, 359, 369, 396, 408, 461, 471, 477
NlaIII CATG 1 cut(s) 68
NmuCI GTSAC 1 cut(s) 142
NspI RCATGY 1 cut(s) 68
OliI CACNNNNGTG 2 cut(s) 140, 239
PaeI GCATGC 1 cut(s) 68
PinAI ACCGGT 2 cut(s) 310, 373
PkrI GCNGC 3 cut(s) 205, 208, 528
Psp6I CCWGG 1 cut(s) 431
PspFI CCCAGC 1 cut(s) 260
PspGI CCWGG 1 cut(s) 431
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 2 cut(s) 6, 126
RsaNI GTAC 2 cut(s) 5, 125
RseI CAYNNNNRTG 2 cut(s) 140, 239
Rsr2I CGGWCCG 3 cut(s) 371, 473, 489
RsrII CGGWCCG 3 cut(s) 371, 473, 489
SatI GCNGC 3 cut(s) 204, 207, 527
SduI GDGCHC 1 cut(s) 267
SetI ASST 5 cut(s) 56, 82, 208, 243, 537
SfaNI GCATC 3 cut(s) 93, 175, 220
SmiMI CAYNNNNRTG 2 cut(s) 140, 239
SphI GCATGC 1 cut(s) 68
Sse9I AATT 3 cut(s) 147, 315, 378
SspI AATATT 1 cut(s) 249
SspMI CTAG 2 cut(s) 138, 191
StyI CCWWGG 1 cut(s) 71
TaaI ACNGT 3 cut(s) 269, 439, 493
TaqII GACCGA 1 cut(s) 427
TasI AATT 3 cut(s) 147, 315, 378
TatI WGTACW 1 cut(s) 124
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 3 cut(s) 203, 206, 526
Tsp45I GTSAC 1 cut(s) 142
XceI RCATGY 1 cut(s) 68
XspI CTAG 2 cut(s) 138, 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.