Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

12194447 .. 12195160

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18433.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAATGTCATGTTCGCCGAGTACCTCGGAAAAATAATGGAGGTATATGTCGATGACATGCTGGTCAAAAGTCTAAAGGCCGAGGAGCATATATGGCATCTTGAGAAAGTCTTCGAGGTCATAATGAGGTTCGGGATGAGACTGAACCCCCAGAAATGCATCTTCAAGGTTGTCAAAGGGAAGTTCCTAAGGCATATAATTAGCAGGAGGGGGATTGAAGCCAACCCGGAAAAGATCCAAGCCATATTGGACATGGAAAGGCCCAAAGAGAGGAATGAAGTGAGTTCATTGGCCTGGAAGATTGTCGCCCTTGCCAGATTCGTGTCACGACTCACGGATAAGTGTGCCTCTTTCTTTCGGCTGCTGAAAGACCAGTGGTGTAAGGATATAGTATGGACACCCAAGCAGGAGGAGGCATTCAAACAGATAAAGGCGTACCTCACGTTCGCGCCGGTTTTGTCAAAGCCAATCCCGGGCGAGATGCTTTACTTGTACATTACGGCCTCGCAATCGGCAGTCAACTCGGTGCTCATAAGAAAAGAGTTCGACATCGAGCATGCAGTGTTCTACGCCGAGAAGGGATTCACATCGGCCGAGAGCAGGTACCCGGACGTCGAAAAATTAGCCATGACACTTATTGTAACCGCCAGAAGGTTCAGACATTATTTCCAAGCGCACTCGATAACCCTTTATACAAACCACCCCCTGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

238

Amino Acids

27.84

Weight (kDa)

9.46

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_1	PF00078	1 - 63	2.5e-07	Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2	PF17919	132 - 229	3.5e-19	RNase H-like domain found in reverse transcriptase
RT_RNaseH	PF17917	161 - 234	2.4e-11	RNase H-like domain found in reverse transcriptase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	62
AatII	GACGTC	1 cut(s)	615
Acc36I	ACCTGC	1 cut(s)	591
Acc65I	GGTACC	1 cut(s)	603
AccB1I	GGYRCC	1 cut(s)	603
AccII	CGCG	1 cut(s)	449
AciI	CCGC	1 cut(s)	645
AclWI	GGATC	1 cut(s)	229
AcoI	YGGCCR	1 cut(s)	591
AcyI	GRCGYC	1 cut(s)	612
AfaI	GTAC	4 cut(s)	23, 437, 494, 605
AfiI	CCNNNNNNNGG	4 cut(s)	270, 473, 600, 651
AgsI	TTSAA	3 cut(s)	166, 218, 421
AjnI	CCWGG	1 cut(s)	293
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	1 cut(s)	133
AlwI	GGATC	1 cut(s)	229
Ama87I	CYCGRG	1 cut(s)	472
AoxI	GGCC	5 cut(s)	78, 260, 291, 501, 591
ApeKI	GCWGC	1 cut(s)	361
Asp700I	GAANNNNTTC	2 cut(s)	110, 581
Asp718I	GGTACC	1 cut(s)	603
AspLEI	GCGC	2 cut(s)	451, 676
AspS9I	GGNCC	1 cut(s)	261
AsuC2I	CCSGG	4 cut(s)	227, 473, 474, 608
AvaI	CYCGRG	1 cut(s)	472
AxyI	CCTNAGG	2 cut(s)	188, 707
BanI	GGYRCC	1 cut(s)	603
BbsI	GAAGAC	1 cut(s)	103
Bbv12I	GWGCWC	1 cut(s)	531
BbvI	GCAGC	1 cut(s)	348
BceAI	ACGGC	1 cut(s)	516
BcgI	CGANNNNNNTGC	2 cut(s)	504, 538
BciT130I	CCWGG	1 cut(s)	295
BcnI	CCSGG	4 cut(s)	227, 473, 474, 608
BcoDI	GTCTC	1 cut(s)	133
BfuAI	ACCTGC	1 cut(s)	591
BisI	GCNGC	1 cut(s)	362
BlsI	GCNGC	1 cut(s)	363
Bme1390I	CCNGG	5 cut(s)	227, 295, 473, 474, 608
BmeT110I	CYCGRG	1 cut(s)	472
BmgT120I	GGNCC	1 cut(s)	261
BmiI	GGNNCC	1 cut(s)	605
BmrFI	CCNGG	5 cut(s)	227, 295, 473, 474, 608
BmsI	GCATC	3 cut(s)	106, 168, 471
BpiI	GAAGAC	1 cut(s)	103
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	4 cut(s)	227, 473, 474, 608
BsaBI	GATNNNNATC	1 cut(s)	586
BsaHI	GRCGYC	1 cut(s)	612
BsaJI	CCNNGG	3 cut(s)	25, 81, 472
Bsc4I	CCNNNNNNNGG	4 cut(s)	270, 473, 600, 651
Bse118I	RCCGGY	1 cut(s)	451
Bse1I	ACTGG	1 cut(s)	373
Bse21I	CCTNAGG	2 cut(s)	188, 707
Bse8I	GATNNNNATC	1 cut(s)	586
BseBI	CCWGG	1 cut(s)	295
BseDI	CCNNGG	3 cut(s)	25, 81, 472
BseGI	GGATG	1 cut(s)	141
BseJI	GATNNNNATC	1 cut(s)	586
BseLI	CCNNNNNNNGG	4 cut(s)	270, 473, 600, 651
BseMII	CTCAG	1 cut(s)	698
BseNI	ACTGG	1 cut(s)	373
BseRI	GAGGAG	2 cut(s)	98, 425
BseX3I	CGGCCG	1 cut(s)	591
BseXI	GCAGC	1 cut(s)	348
Bsh1236I	CGCG	1 cut(s)	449
Bsh1285I	CGRYCG	1 cut(s)	594
BshFI	GGCC	5 cut(s)	80, 262, 293, 503, 593
BshNI	GGYRCC	1 cut(s)	603
BsiEI	CGRYCG	1 cut(s)	594
BsiHKAI	GWGCWC	1 cut(s)	531
BsiHKCI	CYCGRG	1 cut(s)	472
BsiSI	CCGG	4 cut(s)	227, 452, 473, 608
BslI	CCNNNNNNNGG	4 cut(s)	270, 473, 600, 651
BsmAI	GTCTC	1 cut(s)	133
BsmI	GAATGC	1 cut(s)	416
BsnI	GGCC	5 cut(s)	80, 262, 293, 503, 593
BsoBI	CYCGRG	1 cut(s)	472
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp1407I	TGTACA	1 cut(s)	492
Bsp143I	GATC	1 cut(s)	234
BspACI	CCGC	1 cut(s)	645
BspANI	GGCC	5 cut(s)	80, 262, 293, 503, 593
BspCNI	CTCAG	1 cut(s)	699
BspFNI	CGCG	1 cut(s)	449
BspLI	GGNNCC	1 cut(s)	605
BspMI	ACCTGC	1 cut(s)	591
BspPI	GGATC	1 cut(s)	229
BspT107I	GGYRCC	1 cut(s)	603
BsrFI	RCCGGY	1 cut(s)	451
BsrGI	TGTACA	1 cut(s)	492
BsrI	ACTGG	1 cut(s)	373
BssAI	RCCGGY	1 cut(s)	451
BssECI	CCNNGG	3 cut(s)	25, 81, 472
BssMI	GATC	1 cut(s)	234
BssNI	GRCGYC	1 cut(s)	612
Bst2UI	CCWGG	1 cut(s)	295
BstACI	GRCGYC	1 cut(s)	612
BstAUI	TGTACA	1 cut(s)	492
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	2 cut(s)	188, 707
BstF5I	GGATG	1 cut(s)	141
BstFNI	CGCG	1 cut(s)	449
BstHHI	GCGC	2 cut(s)	451, 676
BstKTI	GATC	1 cut(s)	237
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	234
BstMCI	CGRYCG	1 cut(s)	594
BstMWI	GCNNNNNNNGC	1 cut(s)	94
BstNI	CCWGG	1 cut(s)	295
BstNSI	RCATGY	2 cut(s)	61, 560
BstSCI	CCNGG	5 cut(s)	225, 293, 471, 472, 606
BstUI	CGCG	1 cut(s)	449
BstV1I	GCAGC	1 cut(s)	348
BstV2I	GAAGAC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
BstZI	CGGCCG	1 cut(s)	591
Bsu36I	CCTNAGG	2 cut(s)	188, 707
BsuRI	GGCC	5 cut(s)	80, 262, 293, 503, 593
BtsCI	GGATG	1 cut(s)	141
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	2 cut(s)	380, 567
BveI	ACCTGC	1 cut(s)	591
Cac8I	GCNNGC	1 cut(s)	558
CfoI	GCGC	2 cut(s)	451, 676
Cfr10I	RCCGGY	1 cut(s)	451
Cfr13I	GGNCC	1 cut(s)	261
Cfr9I	CCCGGG	1 cut(s)	472
Csp6I	GTAC	4 cut(s)	22, 436, 493, 604
CviAII	CATG	5 cut(s)	10, 58, 253, 557, 628
CviQI	GTAC	4 cut(s)	22, 436, 493, 604
DdeI	CTNAG	2 cut(s)	188, 707
DpnI	GATC	1 cut(s)	236
DpnII	GATC	1 cut(s)	234
DrdI	GACNNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	62
EaeI	YGGCCR	1 cut(s)	591
EagI	CGGCCG	1 cut(s)	591
EclXI	CGGCCG	1 cut(s)	591
Eco52I	CGGCCG	1 cut(s)	591
Eco81I	CCTNAGG	2 cut(s)	188, 707
Eco88I	CYCGRG	1 cut(s)	472
EcoRII	CCWGG	1 cut(s)	293
EcoT22I	ATGCAT	1 cut(s)	161
FaeI	CATG	5 cut(s)	13, 61, 256, 560, 631
FatI	CATG	5 cut(s)	9, 57, 252, 556, 627
Fnu4HI	GCNGC	1 cut(s)	362
FokI	GGATG	1 cut(s)	148
Fsp4HI	GCNGC	1 cut(s)	362
GlaI	GCGC	2 cut(s)	450, 675
GluI	GCNGC	1 cut(s)	362
HaeIII	GGCC	5 cut(s)	80, 262, 293, 503, 593
HapII	CCGG	4 cut(s)	227, 452, 473, 608
HhaI	GCGC	2 cut(s)	451, 676
Hin1I	GRCGYC	1 cut(s)	612
Hin1II	CATG	5 cut(s)	13, 61, 256, 560, 631
Hin6I	GCGC	2 cut(s)	449, 674
HinP1I	GCGC	2 cut(s)	449, 674
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HinfI	GANTC	3 cut(s)	318, 330, 582
HpaII	CCGG	4 cut(s)	227, 452, 473, 608
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	2 cut(s)	29, 659
Hpy188III	TCNNGA	3 cut(s)	101, 133, 327
Hpy8I	GTNNAC	1 cut(s)	520
Hpy99I	CGWCG	1 cut(s)	617
HpyAV	CCTTC	2 cut(s)	571, 645
HpyCH4IV	ACGT	2 cut(s)	443, 612
HpyCH4V	TGCA	2 cut(s)	159, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	94
HpyF3I	CTNAG	2 cut(s)	188, 707
HpySE526I	ACGT	2 cut(s)	443, 612
Hsp92I	GRCGYC	1 cut(s)	612
Hsp92II	CATG	5 cut(s)	13, 61, 256, 560, 631
HspAI	GCGC	2 cut(s)	449, 674
KpnI	GGTACC	1 cut(s)	607
Kzo9I	GATC	1 cut(s)	234
LmnI	GCTCC	1 cut(s)	85
Lsp1109I	GCAGC	1 cut(s)	348
LweI	GCATC	3 cut(s)	106, 168, 471
MaeII	ACGT	2 cut(s)	443, 612
MaeIII	GTNAC	2 cut(s)	324, 640
MalI	GATC	1 cut(s)	236
MboI	GATC	1 cut(s)	234
MboII	GAAGA	3 cut(s)	103, 154, 310
MflI	RGATCY	1 cut(s)	234
MhlI	GDGCHC	1 cut(s)	531
MluCI	AATT	2 cut(s)	198, 620
MlyI	GAGTC	1 cut(s)	324
Mph1103I	ATGCAT	1 cut(s)	161
MroXI	GAANNNNTTC	2 cut(s)	110, 581
MspI	CCGG	4 cut(s)	227, 452, 473, 608
MspR9I	CCNGG	5 cut(s)	227, 295, 473, 474, 608
Mva1269I	GAATGC	1 cut(s)	416
MvaI	CCWGG	1 cut(s)	295
MvnI	CGCG	1 cut(s)	449
MwoI	GCNNNNNNNGC	1 cut(s)	94
NciI	CCSGG	4 cut(s)	227, 473, 474, 608
NdeII	GATC	1 cut(s)	234
NlaIII	CATG	5 cut(s)	13, 61, 256, 560, 631
NlaIV	GGNNCC	1 cut(s)	605
NmeAIII	GCCGAG	4 cut(s)	43, 106, 598, 619
NmuCI	GTSAC	1 cut(s)	324
NsiI	ATGCAT	1 cut(s)	161
NspI	RCATGY	2 cut(s)	61, 560
PaeI	GCATGC	1 cut(s)	560
PctI	GAATGC	1 cut(s)	416
PdmI	GAANNNNTTC	2 cut(s)	110, 581
PfeI	GAWTC	2 cut(s)	318, 582
PkrI	GCNGC	1 cut(s)	363
PleI	GAGTC	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	605
PspPI	GGNCC	1 cut(s)	261
PsrI	GAACNNNNNNTAC	2 cut(s)	428, 460
PsuI	RGATCY	1 cut(s)	234
RsaI	GTAC	4 cut(s)	23, 437, 494, 605
RsaNI	GTAC	4 cut(s)	22, 436, 493, 604
SatI	GCNGC	1 cut(s)	362
Sau3AI	GATC	1 cut(s)	234
Sau96I	GGNCC	1 cut(s)	261
SchI	GAGTC	1 cut(s)	324
ScrFI	CCNGG	5 cut(s)	227, 295, 473, 474, 608
SduI	GDGCHC	1 cut(s)	531
SfaNI	GCATC	3 cut(s)	106, 168, 471
SmaI	CCCGGG	1 cut(s)	474
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
SphI	GCATGC	1 cut(s)	560
Sse9I	AATT	2 cut(s)	198, 620
SsiI	CCGC	1 cut(s)	645
StyD4I	CCNGG	5 cut(s)	225, 293, 471, 472, 606
TaiI	ACGT	2 cut(s)	446, 615
TaqI	TCGA	6 cut(s)	51, 114, 546, 552, 615, 680
TasI	AATT	2 cut(s)	198, 620
TatI	WGTACW	1 cut(s)	492
TfiI	GAWTC	2 cut(s)	318, 582
TscAI	CASTG	2 cut(s)	380, 567
TseFI	GTSAC	1 cut(s)	324
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	324
TspDTI	ATGAA	3 cut(s)	17, 276, 291
TspGWI	ACGGA	1 cut(s)	350
TspMI	CCCGGG	1 cut(s)	472
TspRI	CASTG	2 cut(s)	380, 567
XceI	RCATGY	2 cut(s)	61, 560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	250
XmaI	CCCGGG	1 cut(s)	472
XmnI	GAANNNNTTC	2 cut(s)	110, 581
ZraI	GACGTC	1 cut(s)	613
Zsp2I	ATGCAT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.