Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017188.1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 532

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017188.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 416 bp

atggcggagtacgaagcactcattgccggcctactccttgccatcaactcgggtgctgacagcgtcaacatattcagcaactctcaattagtcgttaaccaggtcaacgacagcttccaagccaaggacaagcagttagcggcatatttgggagtccagcggacacaagggtggagtaccttgacaagccaagcatcacaaagaccctggcggaaatcttcaatattcaagtcaaccagctggatggacgagatcattgcatacaagcgcagcggcacattgccggaggataaggtccaggcgagacagctaaaacggcgagcaaccagctataagatccagaatggcaggctttaccgccagggattcacccatcccaacctccgctgcctaaccccagaggagggacaggccgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

139

Amino Acids

15.64

Weight (kDa)

9.81

Isoelectric Point (pI)

43.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	5, 140, 160, 211, 273, 358, 385
AclWI	GGATC	1 cut(s)	331
AfaI	GTAC	2 cut(s)	11, 178
AfiI	CCNNNNNNNGG	3 cut(s)	124, 403, 404
AgsI	TTSAA	2 cut(s)	222, 229
AjnI	CCWGG	4 cut(s)	99, 206, 297, 360
AleI	CACNNNNGTG	1 cut(s)	169
AluBI	AGCT	4 cut(s)	114, 240, 310, 330
AluI	AGCT	4 cut(s)	114, 240, 310, 330
Alw26I	GTCTC	1 cut(s)	298
AlwI	GGATC	1 cut(s)	331
Ama87I	CYCGRG	1 cut(s)	49
AoxI	GGCC	2 cut(s)	28, 411
ApeKI	GCWGC	2 cut(s)	270, 387
AspLEI	GCGC	1 cut(s)	270
AspS9I	GGNCC	1 cut(s)	295
AsuHPI	GGTGA	1 cut(s)	361
AvaI	CYCGRG	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	295
BbvI	GCAGC	2 cut(s)	282, 374
BccI	CCATC	3 cut(s)	50, 238, 381
BceAI	ACGGC	2 cut(s)	332, 398
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BciT130I	CCWGG	4 cut(s)	101, 208, 299, 362
BcoDI	GTCTC	1 cut(s)	298
BisI	GCNGC	4 cut(s)	141, 271, 274, 388
BlsI	GCNGC	4 cut(s)	142, 272, 275, 389
Bme1390I	CCNGG	4 cut(s)	101, 208, 299, 362
Bme18I	GGWCC	1 cut(s)	295
BmeT110I	CYCGRG	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	295
BmrFI	CCNGG	4 cut(s)	101, 208, 299, 362
BmsI	GCATC	1 cut(s)	203
BsaJI	CCNNGG	3 cut(s)	123, 206, 361
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 403, 404
Bse118I	RCCGGY	1 cut(s)	26
Bse3DI	GCAATG	3 cut(s)	21, 255, 278
BseBI	CCWGG	4 cut(s)	101, 208, 299, 362
BseDI	CCNNGG	3 cut(s)	123, 206, 361
BseGI	GGATG	2 cut(s)	249, 373
BseLI	CCNNNNNNNGG	3 cut(s)	124, 403, 404
BseMI	GCAATG	3 cut(s)	21, 255, 278
BseRI	GAGGAG	1 cut(s)	416
BseXI	GCAGC	2 cut(s)	282, 374
BshFI	GGCC	2 cut(s)	30, 413
BsiHKCI	CYCGRG	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	27, 284
BslI	CCNNNNNNNGG	3 cut(s)	124, 403, 404
BsmAI	GTCTC	1 cut(s)	298
BsnI	GGCC	2 cut(s)	30, 413
BsoBI	CYCGRG	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	252, 336
BspACI	CCGC	7 cut(s)	5, 140, 160, 211, 273, 358, 385
BspANI	GGCC	2 cut(s)	30, 413
BspPI	GGATC	1 cut(s)	331
BsrDI	GCAATG	3 cut(s)	21, 255, 278
BsrFI	RCCGGY	1 cut(s)	26
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	3 cut(s)	123, 206, 361
BssMI	GATC	2 cut(s)	252, 336
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	4 cut(s)	101, 208, 299, 362
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstC8I	GCNNGC	3 cut(s)	28, 321, 350
BstF5I	GGATG	2 cut(s)	249, 373
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	2 cut(s)	255, 339
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	2 cut(s)	252, 336
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 316
BstNI	CCWGG	4 cut(s)	101, 208, 299, 362
BstSCI	CCNGG	4 cut(s)	99, 206, 297, 360
BstV1I	GCAGC	2 cut(s)	282, 374
BstX2I	RGATCY	1 cut(s)	336
BstXI	CCANNNNNNTGG	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	336
BsuRI	GGCC	2 cut(s)	30, 413
BtsCI	GGATG	2 cut(s)	249, 373
Cac8I	GCNNGC	3 cut(s)	28, 321, 350
CfoI	GCGC	1 cut(s)	270
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	295
CseI	GACGC	1 cut(s)	52
CsiI	ACCWGGT	1 cut(s)	99
Csp6I	GTAC	2 cut(s)	10, 177
CviJI	RGCY	9 cut(s)	30, 114, 122, 189, 240, 310, 330, 352, 413
CviKI_1	RGCY	9 cut(s)	30, 114, 122, 189, 240, 310, 330, 352, 413
CviQI	GTAC	2 cut(s)	10, 177
DpnI	GATC	2 cut(s)	254, 338
DpnII	GATC	2 cut(s)	252, 336
EciI	GGCGGA	2 cut(s)	20, 226
Eco130I	CCWWGG	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	295
Eco88I	CYCGRG	1 cut(s)	49
EcoRII	CCWGG	4 cut(s)	99, 206, 297, 360
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaiI	YATR	4 cut(s)	71, 145, 262, 333
Fnu4HI	GCNGC	4 cut(s)	141, 271, 274, 388
FokI	GGATG	2 cut(s)	256, 360
Fsp4HI	GCNGC	4 cut(s)	141, 271, 274, 388
GlaI	GCGC	1 cut(s)	269
GluI	GCNGC	4 cut(s)	141, 271, 274, 388
HaeIII	GGCC	2 cut(s)	30, 413
HapII	CCGG	2 cut(s)	27, 284
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	1 cut(s)	270
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HincII	GTYRAC	4 cut(s)	67, 97, 106, 234
HindII	GTYRAC	4 cut(s)	67, 97, 106, 234
HinfI	GANTC	2 cut(s)	153, 366
HpaI	GTTAAC	1 cut(s)	97
HpaII	CCGG	2 cut(s)	27, 284
HphI	GGTGA	1 cut(s)	361
Hpy166II	GTNNAC	4 cut(s)	67, 97, 106, 234
Hpy188III	TCNNGA	1 cut(s)	340
Hpy8I	GTNNAC	4 cut(s)	67, 97, 106, 234
HpyCH4V	TGCA	1 cut(s)	260
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 316
HspAI	GCGC	1 cut(s)	268
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
KspAI	GTTAAC	1 cut(s)	97
Kzo9I	GATC	2 cut(s)	252, 336
Lsp1109I	GCAGC	2 cut(s)	282, 374
LweI	GCATC	1 cut(s)	203
MabI	ACCWGGT	1 cut(s)	99
MalI	GATC	2 cut(s)	254, 338
MboI	GATC	2 cut(s)	252, 336
MboII	GAAGA	1 cut(s)	210
MflI	RGATCY	1 cut(s)	336
MluCI	AATT	1 cut(s)	86
MlyI	GAGTC	1 cut(s)	162
MnlI	CCTC	4 cut(s)	280, 392, 394, 397
MroNI	GCCGGC	1 cut(s)	26
MseI	TTAA	1 cut(s)	96
MslI	CAYNNNNRTG	1 cut(s)	169
MspA1I	CMGCKG	4 cut(s)	160, 240, 273, 387
MspI	CCGG	2 cut(s)	27, 284
MspR9I	CCNGG	4 cut(s)	101, 208, 299, 362
MvaI	CCWGG	4 cut(s)	101, 208, 299, 362
MwoI	GCNNNNNNNGC	2 cut(s)	23, 316
NaeI	GCCGGC	1 cut(s)	28
NdeII	GATC	2 cut(s)	252, 336
NgoMIV	GCCGGC	1 cut(s)	26
OliI	CACNNNNGTG	1 cut(s)	169
PdiI	GCCGGC	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	366
PflFI	GACNNNGTC	1 cut(s)	62
PkrI	GCNGC	4 cut(s)	142, 272, 275, 389
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
Psp6I	CCWGG	4 cut(s)	99, 206, 297, 360
PspGI	CCWGG	4 cut(s)	99, 206, 297, 360
PspPI	GGNCC	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	336
PsyI	GACNNNGTC	1 cut(s)	62
PvuII	CAGCTG	1 cut(s)	240
RsaI	GTAC	2 cut(s)	11, 178
RsaNI	GTAC	2 cut(s)	10, 177
RseI	CAYNNNNRTG	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	4 cut(s)	141, 271, 274, 388
Sau3AI	GATC	2 cut(s)	252, 336
Sau96I	GGNCC	1 cut(s)	295
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	4 cut(s)	101, 208, 299, 362
SetI	ASST	8 cut(s)	105, 116, 182, 242, 297, 312, 332, 384
SexAI	ACCWGGT	1 cut(s)	99
SfaNI	GCATC	1 cut(s)	203
SinI	GGWCC	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	169
Sse9I	AATT	1 cut(s)	86
SsiI	CCGC	7 cut(s)	5, 140, 160, 211, 273, 358, 385
SspI	AATATT	1 cut(s)	225
StyD4I	CCNGG	4 cut(s)	99, 206, 297, 360
StyI	CCWWGG	1 cut(s)	123
TasI	AATT	1 cut(s)	86
TauI	GCSGC	2 cut(s)	143, 276
TfiI	GAWTC	1 cut(s)	366
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TseI	GCWGC	2 cut(s)	270, 387
Tth111I	GACNNNGTC	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.