Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001144.1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

159024 .. 160048

Gene Structure 1025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001144.1_g000044.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atgatccatggtggagggctgaaggatatacctctccataggaggaaacgaagctccagtttcggccatctggaggttttcaatttccacaacaccctgcagcaaggaggtgtgactggatggaagtccattattttcttggaagaggaggaagctaacctaaaaaggtcccatgatgaccccttcttgatcacgctccaaatgggccactatattacttctcaagtactcgtggacaccagggcttctgttaccacttggataagattacttatcgatcatggtggcagaaagtccaaactgctttaccatcaaaatagagttcatcatggtcgactgtgcctcatcctacaacacgatcttgggccgatcggcactttggtgtttaaaaacattcatcgctggccacatgctcgtgatgaagattccaaccccggtggggatagaaactatccgggagatgatacagactctgatgaagagcggcccgatgccgtggaagacattgatgaagtcgtgttgtccgaagaattccctaacagaacggtcaagataggtactaaattgactccagctatcagggaaagtttgatctcgttcctacgttccaatacatcagctttcgcttggtcatacgaggacatgcttaggataccaactgacatagccatgtacaaactcagcattgttcctttctcggaaccggtaagacagaagcgttgggccttcaaccatgataaatacaaggctatccaggcagaggtaaagaaactcatggccatcaatttagtccaggaggtgacgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

268

Amino Acids

30.77

Weight (kDa)

6.71

Isoelectric Point (pI)

51.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	484
AccI	GTMKAC	1 cut(s)	334
AciI	CCGC	1 cut(s)	484
AcoI	YGGCCR	3 cut(s)	64, 404, 777
AcsI	RAATTY	1 cut(s)	530
AcuI	CTGAAG	1 cut(s)	41
AfaI	GTAC	3 cut(s)	228, 559, 674
AfiI	CCNNNNNNNGG	3 cut(s)	73, 439, 760
AgeI	ACCGGT	1 cut(s)	703
AgsI	TTSAA	2 cut(s)	82, 730
AjnI	CCWGG	3 cut(s)	239, 753, 792
AleI	CACNNNNGTG	1 cut(s)	380
AluBI	AGCT	4 cut(s)	54, 155, 575, 620
AluI	AGCT	4 cut(s)	54, 155, 575, 620
AlwNI	CAGNNNCTG	1 cut(s)	473
AoxI	GGCC	7 cut(s)	64, 205, 365, 404, 485, 723, 777
ApeKI	GCWGC	1 cut(s)	100
ApoI	RAATTY	1 cut(s)	530
AsiGI	ACCGGT	1 cut(s)	703
AspS9I	GGNCC	5 cut(s)	168, 205, 365, 486, 723
AsuC2I	CCSGG	2 cut(s)	435, 456
AvaII	GGWCC	1 cut(s)	168
BalI	TGGCCA	2 cut(s)	406, 779
BauI	CACGAG	2 cut(s)	230, 414
BbsI	GAAGAC	1 cut(s)	507
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	4 cut(s)	75, 114, 318, 788
BceAI	ACGGC	1 cut(s)	479
BciT130I	CCWGG	3 cut(s)	241, 755, 794
BciVI	GTATCC	1 cut(s)	645
BclI	TGATCA	1 cut(s)	189
BcnI	CCSGG	2 cut(s)	435, 456
BfmI	CTRYAG	1 cut(s)	98
BfuI	GTATCC	1 cut(s)	645
BisI	GCNGC	2 cut(s)	101, 485
BlsI	GCNGC	2 cut(s)	102, 486
BmcAI	AGTACT	1 cut(s)	228
Bme1390I	CCNGG	5 cut(s)	241, 435, 456, 755, 794
Bme18I	GGWCC	1 cut(s)	168
BmgT120I	GGNCC	5 cut(s)	168, 205, 365, 486, 723
BmiI	GGNNCC	2 cut(s)	170, 702
BmrFI	CCNGG	5 cut(s)	241, 435, 456, 755, 794
BmsI	GCATC	1 cut(s)	481
BpiI	GAAGAC	1 cut(s)	507
BpmI	CTGGAG	3 cut(s)	40, 92, 555
Bpu10I	CCTNAGC	1 cut(s)	647
BpuEI	CTTGAG	1 cut(s)	207
BpuMI	CCSGG	2 cut(s)	435, 456
Bsa29I	ATCGAT	1 cut(s)	276
BsaJI	CCNNGG	4 cut(s)	7, 240, 433, 495
BsaWI	WCCGGW	1 cut(s)	703
BsaXI	ACNNNNNCTCC	1 cut(s)	788
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 439, 760
Bse118I	RCCGGY	1 cut(s)	703
Bse1I	ACTGG	2 cut(s)	57, 121
BseBI	CCWGG	3 cut(s)	241, 755, 794
BseCI	ATCGAT	1 cut(s)	276
BseDI	CCNNGG	4 cut(s)	7, 240, 433, 495
BseGI	GGATG	2 cut(s)	125, 345
BseLI	CCNNNNNNNGG	3 cut(s)	73, 439, 760
BseMII	CTCAG	1 cut(s)	694
BseNI	ACTGG	2 cut(s)	57, 121
BseRI	GAGGAG	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	112
Bsh1285I	CGRYCG	1 cut(s)	372
BshFI	GGCC	7 cut(s)	66, 207, 367, 406, 487, 725, 779
BshTI	ACCGGT	1 cut(s)	703
BshVI	ATCGAT	1 cut(s)	276
BsiEI	CGRYCG	1 cut(s)	372
BsiSI	CCGG	3 cut(s)	435, 455, 704
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	3 cut(s)	73, 439, 760
BsmFI	GGGAC	1 cut(s)	154
BsnI	GGCC	7 cut(s)	66, 207, 367, 406, 487, 725, 779
Bsp1407I	TGTACA	1 cut(s)	672
Bsp143I	GATC	6 cut(s)	3, 189, 277, 358, 369, 591
Bsp19I	CCATGG	1 cut(s)	7
BspACI	CCGC	1 cut(s)	484
BspANI	GGCC	7 cut(s)	66, 207, 367, 406, 487, 725, 779
BspCNI	CTCAG	1 cut(s)	693
BspDI	ATCGAT	1 cut(s)	276
BspLI	GGNNCC	2 cut(s)	170, 702
BspMAI	CTGCAG	1 cut(s)	102
BspQI	GCTCTTC	1 cut(s)	474
BsrBI	CCGCTC	1 cut(s)	484
BsrFI	RCCGGY	1 cut(s)	703
BsrGI	TGTACA	1 cut(s)	672
BsrI	ACTGG	2 cut(s)	57, 121
BssAI	RCCGGY	1 cut(s)	703
BssECI	CCNNGG	4 cut(s)	7, 240, 433, 495
BssMI	GATC	6 cut(s)	3, 189, 277, 358, 369, 591
BssSI	CACGAG	2 cut(s)	230, 414
BssT1I	CCWWGG	1 cut(s)	7
Bst2BI	CACGAG	2 cut(s)	230, 414
Bst2UI	CCWGG	3 cut(s)	241, 755, 794
Bst4CI	ACNGT	2 cut(s)	339, 547
Bst6I	CTCTTC	2 cut(s)	138, 474
BstAUI	TGTACA	1 cut(s)	672
BstC8I	GCNNGC	1 cut(s)	404
BstDEI	CTNAG	2 cut(s)	647, 680
BstDSI	CCRYGG	2 cut(s)	7, 495
BstF5I	GGATG	2 cut(s)	125, 345
BstKTI	GATC	6 cut(s)	6, 192, 280, 361, 372, 594
BstMBI	GATC	6 cut(s)	3, 189, 277, 358, 369, 591
BstMCI	CGRYCG	1 cut(s)	372
BstMWI	GCNNNNNNNGC	1 cut(s)	755
BstNI	CCWGG	3 cut(s)	241, 755, 794
BstNSI	RCATGY	2 cut(s)	413, 646
BstSCI	CCNGG	5 cut(s)	239, 433, 454, 753, 792
BstSFI	CTRYAG	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	112
BstV2I	GAAGAC	1 cut(s)	507
Bsu15I	ATCGAT	1 cut(s)	276
BsuI	GTATCC	1 cut(s)	645
BsuRI	GGCC	7 cut(s)	66, 207, 367, 406, 487, 725, 779
BsuTUI	ATCGAT	1 cut(s)	276
BtgI	CCRYGG	2 cut(s)	7, 495
BtgZI	GCGATG	1 cut(s)	383
BtsCI	GGATG	2 cut(s)	125, 345
Cac8I	GCNNGC	1 cut(s)	404
CaiI	CAGNNNCTG	1 cut(s)	473
Cfr10I	RCCGGY	1 cut(s)	703
Cfr13I	GGNCC	5 cut(s)	168, 205, 365, 486, 723
ClaI	ATCGAT	1 cut(s)	276
Csp6I	GTAC	3 cut(s)	227, 558, 673
CspAI	ACCGGT	1 cut(s)	703
CspCI	CAANNNNNGTGG	2 cut(s)	418, 453
CviAII	CATG	9 cut(s)	8, 173, 281, 329, 410, 643, 670, 734, 775
CviQI	GTAC	3 cut(s)	227, 558, 673
DdeI	CTNAG	2 cut(s)	647, 680
DpnI	GATC	6 cut(s)	5, 191, 279, 360, 371, 593
DpnII	GATC	6 cut(s)	3, 189, 277, 358, 369, 591
DraI	TTTAAA	1 cut(s)	388
EaeI	YGGCCR	3 cut(s)	64, 404, 777
Eam1104I	CTCTTC	2 cut(s)	138, 474
EarI	CTCTTC	2 cut(s)	138, 474
Eco130I	CCWWGG	1 cut(s)	7
Eco47I	GGWCC	1 cut(s)	168
Eco57I	CTGAAG	1 cut(s)	41
EcoO109I	RGGNCCY	1 cut(s)	168
EcoRI	GAATTC	1 cut(s)	530
EcoRII	CCWGG	3 cut(s)	239, 753, 792
EcoT14I	CCWWGG	1 cut(s)	7
ErhI	CCWWGG	1 cut(s)	7
FaeI	CATG	9 cut(s)	11, 176, 284, 332, 413, 646, 673, 737, 778
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	9 cut(s)	7, 172, 280, 328, 409, 642, 669, 733, 774
FbaI	TGATCA	1 cut(s)	189
FblI	GTMKAC	1 cut(s)	334
Fnu4HI	GCNGC	2 cut(s)	101, 485
FokI	GGATG	2 cut(s)	132, 332
Fsp4HI	GCNGC	2 cut(s)	101, 485
GluI	GCNGC	2 cut(s)	101, 485
GsuI	CTGGAG	3 cut(s)	40, 92, 555
HaeIII	GGCC	7 cut(s)	66, 207, 367, 406, 487, 725, 779
HapII	CCGG	3 cut(s)	435, 455, 704
Hin1II	CATG	9 cut(s)	11, 176, 284, 332, 413, 646, 673, 737, 778
HincII	GTYRAC	1 cut(s)	335
HindII	GTYRAC	1 cut(s)	335
HinfI	GANTC	3 cut(s)	425, 470, 568
HpaII	CCGG	3 cut(s)	435, 455, 704
Hpy166II	GTNNAC	2 cut(s)	235, 335
Hpy188I	TCNGA	3 cut(s)	475, 526, 700
Hpy188III	TCNNGA	4 cut(s)	71, 187, 416, 550
Hpy8I	GTNNAC	2 cut(s)	235, 335
HpyAV	CCTTC	3 cut(s)	16, 193, 736
HpyCH4III	ACNGT	2 cut(s)	339, 547
HpyCH4IV	ACGT	2 cut(s)	604, 803
HpyCH4V	TGCA	1 cut(s)	100
HpyF10VI	GCNNNNNNNGC	1 cut(s)	755
HpyF3I	CTNAG	2 cut(s)	647, 680
HpySE526I	ACGT	2 cut(s)	604, 803
Hsp92II	CATG	9 cut(s)	11, 176, 284, 332, 413, 646, 673, 737, 778
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	6 cut(s)	3, 189, 277, 358, 369, 591
LguI	GCTCTTC	1 cut(s)	474
LmnI	GCTCC	2 cut(s)	59, 201
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	1 cut(s)	481
MaeII	ACGT	2 cut(s)	604, 803
MaeIII	GTNAC	3 cut(s)	112, 250, 799
MalI	GATC	6 cut(s)	5, 191, 279, 360, 371, 593
MbiI	CCGCTC	1 cut(s)	484
MboI	GATC	6 cut(s)	3, 189, 277, 358, 369, 591
MboII	GAAGA	5 cut(s)	155, 434, 491, 512, 539
MlsI	TGGCCA	2 cut(s)	406, 779
MluCI	AATT	4 cut(s)	82, 530, 563, 784
MluNI	TGGCCA	2 cut(s)	406, 779
MlyI	GAGTC	2 cut(s)	464, 562
MmeI	TCCRAC	1 cut(s)	453
Mox20I	TGGCCA	2 cut(s)	406, 779
MscI	TGGCCA	2 cut(s)	406, 779
MseI	TTAA	1 cut(s)	387
MslI	CAYNNNNRTG	3 cut(s)	380, 414, 668
Msp20I	TGGCCA	2 cut(s)	406, 779
MspI	CCGG	3 cut(s)	435, 455, 704
MspR9I	CCNGG	5 cut(s)	241, 435, 456, 755, 794
MvaI	CCWGG	3 cut(s)	241, 755, 794
MwoI	GCNNNNNNNGC	1 cut(s)	755
NciI	CCSGG	2 cut(s)	435, 456
NcoI	CCATGG	1 cut(s)	7
NdeII	GATC	6 cut(s)	3, 189, 277, 358, 369, 591
NlaIII	CATG	9 cut(s)	11, 176, 284, 332, 413, 646, 673, 737, 778
NlaIV	GGNNCC	2 cut(s)	170, 702
NmuCI	GTSAC	2 cut(s)	112, 799
NspI	RCATGY	2 cut(s)	413, 646
OliI	CACNNNNGTG	1 cut(s)	380
PciSI	GCTCTTC	1 cut(s)	474
PcsI	WCGNNNNNNNCGW	1 cut(s)	522
PfeI	GAWTC	1 cut(s)	425
PfoI	TCCNGGA	2 cut(s)	454, 792
PinAI	ACCGGT	1 cut(s)	703
PkrI	GCNGC	2 cut(s)	102, 486
Ple19I	CGATCG	1 cut(s)	372
PleI	GAGTC	2 cut(s)	464, 562
PpsI	GAGTC	2 cut(s)	464, 562
PpuMI	RGGWCCY	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	168
Psp6I	CCWGG	3 cut(s)	239, 753, 792
PspGI	CCWGG	3 cut(s)	239, 753, 792
PspN4I	GGNNCC	2 cut(s)	170, 702
PspPI	GGNCC	5 cut(s)	168, 205, 365, 486, 723
PspPPI	RGGWCCY	1 cut(s)	168
PstI	CTGCAG	1 cut(s)	102
PstNI	CAGNNNCTG	1 cut(s)	473
PvuI	CGATCG	1 cut(s)	372
RsaI	GTAC	3 cut(s)	228, 559, 674
RsaNI	GTAC	3 cut(s)	227, 558, 673
RseI	CAYNNNNRTG	3 cut(s)	380, 414, 668
SalI	GTCGAC	1 cut(s)	333
SapI	GCTCTTC	1 cut(s)	474
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	2 cut(s)	101, 485
Sau3AI	GATC	6 cut(s)	3, 189, 277, 358, 369, 591
Sau96I	GGNCC	5 cut(s)	168, 205, 365, 486, 723
ScaI	AGTACT	1 cut(s)	228
SchI	GAGTC	2 cut(s)	464, 562
ScrFI	CCNGG	5 cut(s)	241, 435, 456, 755, 794
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	1 cut(s)	98
SinI	GGWCC	1 cut(s)	168
SmiMI	CAYNNNNRTG	3 cut(s)	380, 414, 668
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
Sse9I	AATT	4 cut(s)	82, 530, 563, 784
SsiI	CCGC	1 cut(s)	484
StyD4I	CCNGG	5 cut(s)	239, 433, 454, 753, 792
StyI	CCWWGG	1 cut(s)	7
TaaI	ACNGT	2 cut(s)	339, 547
TaiI	ACGT	2 cut(s)	607, 806
TaqI	TCGA	2 cut(s)	276, 334
TasI	AATT	4 cut(s)	82, 530, 563, 784
TatI	WGTACW	2 cut(s)	226, 672
TauI	GCSGC	1 cut(s)	487
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TseFI	GTSAC	2 cut(s)	112, 799
TseI	GCWGC	1 cut(s)	100
Tsp45I	GTSAC	2 cut(s)	112, 799
TspDTI	ATGAA	5 cut(s)	314, 386, 435, 492, 525
VpaK11BI	GGWCC	1 cut(s)	168
XapI	RAATTY	1 cut(s)	530
XceI	RCATGY	2 cut(s)	413, 646
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136
XmiI	GTMKAC	1 cut(s)	334
ZrmI	AGTACT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.