Rh1AG167000

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000250
Physical Location & Seq
Forward (+)
31794776 .. 31795141
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG167000.1

Sequence Viewer

Length: 366 bp
ATGAAATCGCCAACTCCAGGCGTCCCCTTAAAATTGTATTTGGCCTCCACCAATGCAGCAGTAGGGGCATTATTAGCGCAAGACAGTGAAGCTGGGGAAGAATTTCCTATTTACAATGTGAGCAAGCTTTTGAGAGGGCCTGAAACACGCTACCCTAAAGCAGAAAGACTTTGTTTAGCACTTGTCTATGCAACGCAAAGGTTACGTCACTATTTTTTGGCCCACAGGCTTCAATTAATGGTGAAGACTGATCTGGTCAGATATTTGCTGACGAAACCAGTACTATCAGGGAGATTAGCAAGATGGCTACTCCAGTTGTCTGAGTTTGACATTGTATGTACGACACCGAGGGCTATTAAGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

121

Amino Acids

13.61

Weight (kDa)

9.82

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RT_RNaseH_2 PF17919 2 - 77 6.3e-13 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 8 - 109 1.7e-19 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica Prupe.6G166700_v2.0.a1
pyrus_communis pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis RchiOBHm_Chr5g0018261
rosa_laevigata RLG00000022447
rosa_multiflora Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa Rorug02G0381000
rosa_samantha Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 101
AcyI GRCGYC 1 cut(s) 21
AfaI GTAC 2 cut(s) 282, 340
AfiI CCNNNNNNNGG 1 cut(s) 17
AgsI TTSAA 1 cut(s) 233
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 2 cut(s) 92, 127
AluI AGCT 2 cut(s) 92, 127
AoxI GGCC 3 cut(s) 42, 137, 219
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 1 cut(s) 101
ArsI GACNNNNNNTTYG 2 cut(s) 190, 222
AseI ATTAAT 1 cut(s) 236
Asp700I GAANNNNTTC 1 cut(s) 102
AspLEI GCGC 1 cut(s) 79
AspS9I GGNCC 2 cut(s) 137, 220
AsuHPI GGTGA 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 68
BccI CCATC 1 cut(s) 297
BciT130I CCWGG 1 cut(s) 18
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
BmcAI AGTACT 1 cut(s) 282
Bme1390I CCNGG 1 cut(s) 18
BmgT120I GGNCC 2 cut(s) 137, 220
BmrFI CCNGG 1 cut(s) 18
BpiI GAAGAC 1 cut(s) 251
BpmI CTGGAG 1 cut(s) 296
BsaHI GRCGYC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 347
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse1I ACTGG 2 cut(s) 278, 313
BseBI CCWGG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 347
BseLI CCNNNNNNNGG 1 cut(s) 17
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 2 cut(s) 278, 313
BseXI GCAGC 1 cut(s) 68
BseYI CCCAGC 1 cut(s) 92
BshFI GGCC 3 cut(s) 44, 139, 221
BslFI GGGAC 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 17
BsmFI GGGAC 1 cut(s) 8
BsnI GGCC 3 cut(s) 44, 139, 221
Bsp143I GATC 1 cut(s) 250
BspANI GGCC 3 cut(s) 44, 139, 221
BspCNI CTCAG 1 cut(s) 313
BsrI ACTGG 2 cut(s) 278, 313
BssECI CCNNGG 1 cut(s) 347
BssMI GATC 1 cut(s) 250
BssNI GRCGYC 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 86
BstACI GRCGYC 1 cut(s) 21
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 321
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 1 cut(s) 253
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 2 cut(s) 65, 74
BstNI CCWGG 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 68
BstV2I GAAGAC 1 cut(s) 251
BsuRI GGCC 3 cut(s) 44, 139, 221
BtsIMutI CAGTG 1 cut(s) 91
Cac8I GCNNGC 1 cut(s) 125
CfoI GCGC 1 cut(s) 79
Cfr13I GGNCC 2 cut(s) 137, 220
CseI GACGC 1 cut(s) 10
Csp6I GTAC 2 cut(s) 281, 339
CviJI RGCY 8 cut(s) 44, 92, 127, 139, 221, 229, 307, 353
CviKI_1 RGCY 8 cut(s) 44, 92, 127, 139, 221, 229, 307, 353
CviQI GTAC 2 cut(s) 281, 339
DdeI CTNAG 1 cut(s) 321
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
EcoO109I RGGNCCY 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 16
FaiI YATR 2 cut(s) 189, 337
FaqI GGGAC 1 cut(s) 8
Fnu4HI GCNGC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 57
GlaI GCGC 1 cut(s) 78
GluI GCNGC 1 cut(s) 57
GsaI CCCAGC 1 cut(s) 96
GsuI CTGGAG 1 cut(s) 296
HaeIII GGCC 3 cut(s) 44, 139, 221
HgaI GACGC 1 cut(s) 10
HhaI GCGC 1 cut(s) 79
Hin1I GRCGYC 1 cut(s) 21
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HindIII AAGCTT 1 cut(s) 125
HphI GGTGA 1 cut(s) 253
Hpy188I TCNGA 2 cut(s) 260, 322
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4IV ACGT 1 cut(s) 205
HpyCH4V TGCA 2 cut(s) 56, 191
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 74
HpyF3I CTNAG 1 cut(s) 321
HpySE526I ACGT 1 cut(s) 205
Hsp92I GRCGYC 1 cut(s) 21
HspAI GCGC 1 cut(s) 77
Kzo9I GATC 1 cut(s) 250
LpnPI CCDG 9 cut(s) 3, 30, 78, 153, 211, 239, 273, 291, 326
Lsp1109I GCAGC 1 cut(s) 68
MaeII ACGT 1 cut(s) 205
MaeIII GTNAC 2 cut(s) 201, 206
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 2 cut(s) 110, 256
MluCI AATT 3 cut(s) 32, 101, 233
MnlI CCTC 3 cut(s) 55, 128, 342
MroXI GAANNNNTTC 1 cut(s) 102
MseI TTAA 3 cut(s) 29, 236, 357
MspR9I CCNGG 1 cut(s) 18
MvaI CCWGG 1 cut(s) 18
MwoI GCNNNNNNNGC 2 cut(s) 65, 74
NdeII GATC 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 206
PdmI GAANNNNTTC 1 cut(s) 102
PkrI GCNGC 1 cut(s) 58
PshBI ATTAAT 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 16
PspFI CCCAGC 1 cut(s) 92
PspGI CCWGG 1 cut(s) 16
PspPI GGNCC 2 cut(s) 137, 220
RsaI GTAC 2 cut(s) 282, 340
RsaNI GTAC 2 cut(s) 281, 339
SaqAI TTAA 3 cut(s) 29, 236, 357
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 1 cut(s) 250
Sau96I GGNCC 2 cut(s) 137, 220
ScaI AGTACT 1 cut(s) 282
ScrFI CCNGG 1 cut(s) 18
SetI ASST 4 cut(s) 94, 129, 203, 208
Sse9I AATT 3 cut(s) 32, 101, 233
StyD4I CCNGG 1 cut(s) 16
TaaI ACNGT 1 cut(s) 86
TaiI ACGT 1 cut(s) 208
TasI AATT 3 cut(s) 32, 101, 233
TatI WGTACW 1 cut(s) 280
Tru1I TTAA 3 cut(s) 29, 236, 357
Tru9I TTAA 3 cut(s) 29, 236, 357
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 91
VspI ATTAAT 1 cut(s) 236
XapI RAATTY 1 cut(s) 101
XmnI GAANNNNTTC 1 cut(s) 102
ZrmI AGTACT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.