Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

17605927 .. 17608058

Gene Structure 2132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G008130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1917 bp

ATGCTCTACGTATATCTGGCAGCATCGGCAACTGCTGTGAGCTCAGTCCTGATTAGGAAAGACTCCGATTGCGAGTACCCAGTGTACTACGCTGGGAAAGGTTACACTGGTGCAGAGTCCAAATACCTGGACATTGAAAGAGTAGCACTGGCCCTCCTGGTATCAGCCCGGAAGCTCAGACATTACTTCCAAGCACATTCTATCACCGTTTTCACTAATCACCCATTGAGGCAGGTTTTGCAGAAACCAGAGACTTCGGGCAGGTTAATTAAGTGGGCCATCGAGCTCGGGGAATTCGACATCAAGTACCTACCCCGGACAGCCATCAAAGGCCAGGCAGCGGCCGATTTTATTTCCGAATCAATCCCTTCCCATGACCCAAACAGGGAACCACCCGAACCGCTAGCCTCAGATCCACCTCCGCCAAGCACTTGGCGATTATACGTGGACAGATCGTCCAACAAGAAAACTAGCGGAGCCGGCATCCTACTCATTAGCCCAGACGAACAAGTCTACAAGTACGCCCTCAAATTTGCCTTCAAAGCATCCAATAACACCGTAGAATACGAAGCACTCATAGCCGGTCTACAAATCGCCCGGGAACTAGGGGTCCAACACCTCCACATCTTCAGTGATTCCCAGTTGGCAAAGGAGCCCCACATGTCCTCTTACCAGGCCTTGGCCCGGGCTTTAGTTCAGAGGTTCACCTCCTACATTTTTACCCAAATACCAAGGGCAGAAAACGACAAGGCAGACGCTCTTGCTAAGCTCGTATCAACTTCTCCAAACCCTACCTATGGGACCACTAAAGTCGAAATACTCGCGGGACCTAGCACTTCCAAAACGGTGTCAGAAATATTTTCGGTTGATCACAAGGCTTCATGGATGGACCCAATTTTGAAATACATGGTTGATGGCCTAGCACCGGATGATAAGGTCGAGGCCAGAAGATTACAACTAAGGTCAGCTCGATACACGATCATGAATGGCAAACTCTACAGGAGAGGACATTGCTTTCCCAACCTGAAGTGTGTGACACCGGAGGAAGGTCACCAAATAATGACGGACATTCACGCTGGTGTATGTGGTAACCATGCCGGAGCTCGATCTCTCTCGCACAAGACCCTAAGGGCAGGATATTTCTGGCCAACCATGTCTGCCCTATGGGGTTTGGACTTGATTGGTAAACTTCCCACGGCGATGGAACAGTTCAAATACGCCATCGTTGCCGTGGACTACCAAACAAAGTTTGGAGTCCCGGATACCATAGTCACCGACAATGGTACCCAGTTTGACAATGATGAGTTGAGGGCCAACACACAGAACCTCGGCACTAAGATCCTCTATGCTTCCCCGGCTCACCCCCAGACAAACGGTCAGGTCGAAGCTGTCAACAAGATAATCAAGAAAATACTGAAAAAGAAGCTTGACGAAGCCAAGGGTCTTTGGGCCGCTAAACTCCCGGAAGTGTTGTGGGCTATCAGAACCACGGCAACGGAGGCCACGGGCGAGACCCCTTTCTGCATGGCTTTTGGATCAGAGGCAGTACTCCCTATCGAAACACAAATCCAGAGTCCTCGCATTGAATACTTCGATGCGGGTACCAACTCAGATGGCCTACACCTCGATGCTGATTTACTCGAGGAACGAAGAGAAGTGGCACATATGCATAACTTGGCAAACAAGCGGAGGATAGCTCGTTACTACGATGCCAAGGTACAGTCCCGGACTTTAAAATTGGGGGACTGGGTCATGAAGCAAGTCTACCCAGAACCCCGGGGACTTGATCCATCCTGGACAGGGCCTTACGAGATCGTCGAAGAGGTAGGTCCCGCAACCTTTTTCATCCGGGTTATGGACGGGGTCGTCTCCAGGCATCCATGGAATACCCAGCGCCTGTGGTACTATTACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

638

Amino Acids

71.62

Weight (kDa)

8.69

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RT_RNaseH_2	PF17919	2 - 70	4e-09	RNase H-like domain found in reverse transcriptase
RT_RNaseH	PF17917	3 - 99	9.2e-17	RNase H-like domain found in reverse transcriptase
RVT_3	PF13456	153 - 257	6.5e-13	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	509, 1865
Acc36I	ACCTGC	2 cut(s)	223, 252
Acc65I	GGTACC	2 cut(s)	1283, 1601
AccB1I	GGYRCC	2 cut(s)	1283, 1601
AccB7I	CCANNNNNTGG	1 cut(s)	679
AccI	GTMKAC	3 cut(s)	513, 586, 1764
AccII	CGCG	1 cut(s)	824
AciI	CCGC	9 cut(s)	341, 401, 422, 474, 824, 1452, 1598, 1687, 1833
AclWI	GGATC	4 cut(s)	407, 1333, 1543, 1781
AcoI	YGGCCR	2 cut(s)	342, 1145
AcsI	RAATTY	2 cut(s)	293, 530
AcuI	CTGAAG	2 cut(s)	613, 1046
AfaI	GTAC	9 cut(s)	77, 86, 308, 521, 1285, 1548, 1603, 1719, 1904
AfiI	CCNNNNNNNGG	9 cut(s)	340, 385, 679, 684, 797, 925, 1046, 1800, 1855
AflIII	ACRYGT	1 cut(s)	660
AgsI	TTSAA	5 cut(s)	137, 541, 901, 1213, 1586
AhdI	GACNNNNNGTC	2 cut(s)	454, 1374
AjnI	CCWGG	6 cut(s)	126, 156, 333, 672, 1793, 1871
AleI	CACNNNNGTG	1 cut(s)	1077
AloI	GAACNNNNNNTCC	2 cut(s)	594, 626
AluBI	AGCT	9 cut(s)	42, 175, 286, 769, 968, 1103, 1388, 1426, 1697
AluI	AGCT	9 cut(s)	42, 175, 286, 769, 968, 1103, 1388, 1426, 1697
Alw21I	GWGCWC	3 cut(s)	44, 288, 1105
Alw26I	GTCTC	3 cut(s)	245, 1505, 1873
AlwI	GGATC	4 cut(s)	407, 1333, 1543, 1781
AlwNI	CAGNNNCTG	1 cut(s)	1897
Ama87I	CYCGRG	5 cut(s)	287, 597, 684, 1640, 1776
ApeKI	GCWGC	2 cut(s)	20, 338
ApoI	RAATTY	2 cut(s)	293, 530
ArsI	GACNNNNNNTTYG	2 cut(s)	1558, 1590
Asp718I	GGTACC	2 cut(s)	1283, 1601
AspLEI	GCGC	1 cut(s)	1896
AsuHPI	GGTGA	6 cut(s)	196, 212, 697, 1043, 1264, 1352
AsuNHI	GCTAGC	1 cut(s)	403
AvaI	CYCGRG	5 cut(s)	287, 597, 684, 1640, 1776
AvaII	GGWCC	5 cut(s)	610, 801, 827, 889, 1829
AxyI	CCTNAGG	1 cut(s)	1127
BaeI	ACNNNNGTAYC	4 cut(s)	1254, 1267, 1287, 1300
BalI	TGGCCA	1 cut(s)	1147
BanI	GGYRCC	2 cut(s)	1283, 1601
BanII	GRGCYC	4 cut(s)	44, 288, 657, 1105
BarI	GAAGNNNNNNTAC	2 cut(s)	1748, 1780
Bbv12I	GWGCWC	3 cut(s)	44, 288, 1105
BbvI	GCAGC	2 cut(s)	32, 350
BccI	CCATC	8 cut(s)	287, 332, 880, 908, 1195, 1229, 1607, 1798
BceAI	ACGGC	3 cut(s)	1212, 1214, 1506
BciT130I	CCWGG	6 cut(s)	128, 158, 335, 674, 1795, 1873
BciVI	GTATCC	1 cut(s)	1255
BclI	TGATCA	1 cut(s)	868
BcoDI	GTCTC	3 cut(s)	245, 1505, 1873
BfaI	CTAG	5 cut(s)	404, 471, 605, 831, 920
BfmI	CTRYAG	1 cut(s)	997
BfoI	RGCGCY	1 cut(s)	1897
BfuAI	ACCTGC	2 cut(s)	223, 252
BfuI	GTATCC	1 cut(s)	1255
BisI	GCNGC	4 cut(s)	21, 339, 342, 1452
BlpI	GCTNAGC	1 cut(s)	765
BlsI	GCNGC	4 cut(s)	22, 340, 343, 1453
BmcAI	AGTACT	1 cut(s)	1548
Bme18I	GGWCC	5 cut(s)	610, 801, 827, 889, 1829
BmeRI	GACNNNNNGTC	2 cut(s)	454, 1374
BmeT110I	CYCGRG	5 cut(s)	287, 597, 684, 1640, 1776
BmrI	ACTGGG	4 cut(s)	74, 634, 1282, 1756
BmsI	GCATC	7 cut(s)	32, 492, 554, 1585, 1618, 1699, 1885
BmtI	GCTAGC	1 cut(s)	407
BmuI	ACTGGG	4 cut(s)	74, 634, 1282, 1756
BplI	GAGNNNNNCTC	2 cut(s)	1681, 1713
BpmI	CTGGAG	1 cut(s)	1855
Bpu1102I	GCTNAGC	1 cut(s)	765
BsaAI	YACGTR	2 cut(s)	10, 445
BsaI	GGTCTC	1 cut(s)	1505
BsaWI	WCCGGW	2 cut(s)	925, 1039
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bsc4I	CCNNNNNNNGG	9 cut(s)	340, 385, 679, 684, 797, 925, 1046, 1800, 1855
Bse118I	RCCGGY	2 cut(s)	479, 581
Bse1I	ACTGG	6 cut(s)	80, 112, 153, 640, 1288, 1751
Bse21I	CCTNAGG	1 cut(s)	1127
Bse3DI	GCAATG	1 cut(s)	1009
BseBI	CCWGG	6 cut(s)	128, 158, 335, 674, 1795, 1873
BseGI	GGATG	7 cut(s)	483, 545, 891, 934, 1790, 1845, 1876
BseLI	CCNNNNNNNGG	9 cut(s)	340, 385, 679, 684, 797, 925, 1046, 1800, 1855
BseMI	GCAATG	1 cut(s)	1009
BseMII	CTCAG	4 cut(s)	57, 190, 423, 1623
BseNI	ACTGG	6 cut(s)	80, 112, 153, 640, 1288, 1751
BseX3I	CGGCCG	1 cut(s)	342
BseXI	GCAGC	2 cut(s)	32, 350
BseYI	CCCAGC	2 cut(s)	92, 1890
BsgI	GTGCAG	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	824
Bsh1285I	CGRYCG	1 cut(s)	345
BshNI	GGYRCC	2 cut(s)	1283, 1601
BsiEI	CGRYCG	1 cut(s)	345
BsiHKAI	GWGCWC	3 cut(s)	44, 288, 1105
BsiHKCI	CYCGRG	5 cut(s)	287, 597, 684, 1640, 1776
BslFI	GGGAC	7 cut(s)	814, 840, 1241, 1708, 1757, 1794, 1815
BslI	CCNNNNNNNGG	9 cut(s)	340, 385, 679, 684, 797, 925, 1046, 1800, 1855
BsmAI	GTCTC	3 cut(s)	245, 1505, 1873
BsmBI	CGTCTC	1 cut(s)	1873
BsmFI	GGGAC	7 cut(s)	814, 840, 1241, 1708, 1757, 1794, 1815
Bso31I	GGTCTC	1 cut(s)	1505
BsoBI	CYCGRG	5 cut(s)	287, 597, 684, 1640, 1776
Bsp1286I	GDGCHC	4 cut(s)	44, 288, 657, 1105
Bsp143I	GATC	9 cut(s)	412, 452, 868, 978, 1106, 1338, 1535, 1786, 1812
Bsp1720I	GCTNAGC	1 cut(s)	765
Bsp19I	CCATGG	1 cut(s)	1880
BspACI	CCGC	9 cut(s)	341, 401, 422, 474, 824, 1452, 1598, 1687, 1833
BspCNI	CTCAG	4 cut(s)	56, 189, 422, 1622
BspFNI	CGCG	1 cut(s)	824
BspHI	TCATGA	2 cut(s)	981, 1752
BspMI	ACCTGC	2 cut(s)	223, 252
BspOI	GCTAGC	1 cut(s)	407
BspPI	GGATC	4 cut(s)	407, 1333, 1543, 1781
BspT107I	GGYRCC	2 cut(s)	1283, 1601
BspTNI	GGTCTC	1 cut(s)	1505
BsrDI	GCAATG	1 cut(s)	1009
BsrFI	RCCGGY	2 cut(s)	479, 581
BsrI	ACTGG	6 cut(s)	80, 112, 153, 640, 1288, 1751
BssAI	RCCGGY	2 cut(s)	479, 581
BssMI	GATC	9 cut(s)	412, 452, 868, 978, 1106, 1338, 1535, 1786, 1812
BssT1I	CCWWGG	5 cut(s)	678, 731, 1437, 1713, 1880
Bst2UI	CCWGG	6 cut(s)	128, 158, 335, 674, 1795, 1873
Bst4CI	ACNGT	6 cut(s)	208, 559, 847, 1209, 1376, 1722
Bst6I	CTCTTC	2 cut(s)	1645, 1815
BstAPI	GCANNNNNTGC	1 cut(s)	238
BstBAI	YACGTR	2 cut(s)	10, 445
BstC8I	GCNNGC	2 cut(s)	405, 481
BstDEI	CTNAG	8 cut(s)	43, 176, 409, 765, 959, 1127, 1335, 1609
BstDSI	CCRYGG	5 cut(s)	1194, 1230, 1488, 1503, 1880
BstEII	GGTNACC	2 cut(s)	1049, 1088
BstF5I	GGATG	7 cut(s)	483, 545, 891, 934, 1790, 1845, 1876
BstFNI	CGCG	1 cut(s)	824
BstH2I	RGCGCY	1 cut(s)	1897
BstHHI	GCGC	1 cut(s)	1896
BstKTI	GATC	9 cut(s)	415, 455, 871, 981, 1109, 1341, 1538, 1789, 1815
BstMAI	GTCTC	3 cut(s)	245, 1505, 1873
BstMBI	GATC	9 cut(s)	412, 452, 868, 978, 1106, 1338, 1535, 1786, 1812
BstMCI	CGRYCG	1 cut(s)	345
BstMWI	GCNNNNNNNGC	8 cut(s)	26, 238, 480, 542, 578, 1226, 1355, 1499
BstNI	CCWGG	6 cut(s)	128, 158, 335, 674, 1795, 1873
BstNSI	RCATGY	1 cut(s)	664
BstPI	GGTNACC	2 cut(s)	1049, 1088
BstSFI	CTRYAG	1 cut(s)	997
BstSNI	TACGTA	1 cut(s)	10
BstUI	CGCG	1 cut(s)	824
BstV1I	GCAGC	2 cut(s)	32, 350
BstX2I	RGATCY	2 cut(s)	412, 1338
BstXI	CCANNNNNNTGG	3 cut(s)	127, 432, 1201
BstYI	RGATCY	2 cut(s)	412, 1338
BstZI	CGGCCG	1 cut(s)	342
Bsu36I	CCTNAGG	1 cut(s)	1127
BsuI	GTATCC	1 cut(s)	1255
BtgI	CCRYGG	5 cut(s)	1194, 1230, 1488, 1503, 1880
BtgZI	GCGATG	1 cut(s)	1214
BtsCI	GGATG	7 cut(s)	483, 545, 891, 934, 1790, 1845, 1876
BtsIMutI	CAGTG	4 cut(s)	87, 105, 146, 637
BveI	ACCTGC	2 cut(s)	223, 252
Cac8I	GCNNGC	2 cut(s)	405, 481
CaiI	CAGNNNCTG	1 cut(s)	1897
CciI	TCATGA	2 cut(s)	981, 1752
CfoI	GCGC	1 cut(s)	1896
Cfr10I	RCCGGY	2 cut(s)	479, 581
Cfr9I	CCCGGG	3 cut(s)	597, 684, 1776
CseI	GACGC	1 cut(s)	764
Csp6I	GTAC	9 cut(s)	76, 85, 307, 520, 1284, 1547, 1602, 1718, 1903
CviQI	GTAC	9 cut(s)	76, 85, 307, 520, 1284, 1547, 1602, 1718, 1903
DdeI	CTNAG	8 cut(s)	43, 176, 409, 765, 959, 1127, 1335, 1609
DpnI	GATC	9 cut(s)	414, 454, 870, 980, 1108, 1340, 1537, 1788, 1814
DpnII	GATC	9 cut(s)	412, 452, 868, 978, 1106, 1338, 1535, 1786, 1812
DraI	TTTAAA	1 cut(s)	1734
DrdI	GACNNNNNNGTC	2 cut(s)	509, 1865
DriI	GACNNNNNGTC	2 cut(s)	454, 1374
DseDI	GACNNNNNNGTC	2 cut(s)	509, 1865
EaeI	YGGCCR	2 cut(s)	342, 1145
EagI	CGGCCG	1 cut(s)	342
Eam1104I	CTCTTC	2 cut(s)	1645, 1815
Eam1105I	GACNNNNNGTC	2 cut(s)	454, 1374
EarI	CTCTTC	2 cut(s)	1645, 1815
EciI	GGCGGA	1 cut(s)	411
Ecl136II	GAGCTC	3 cut(s)	42, 286, 1103
EclXI	CGGCCG	1 cut(s)	342
Eco105I	TACGTA	1 cut(s)	10
Eco130I	CCWWGG	5 cut(s)	678, 731, 1437, 1713, 1880
Eco147I	AGGCCT	1 cut(s)	677
Eco24I	GRGCYC	4 cut(s)	44, 288, 657, 1105
Eco31I	GGTCTC	1 cut(s)	1505
Eco47I	GGWCC	5 cut(s)	610, 801, 827, 889, 1829
Eco52I	CGGCCG	1 cut(s)	342
Eco53kI	GAGCTC	3 cut(s)	42, 286, 1103
Eco57I	CTGAAG	2 cut(s)	613, 1046
Eco81I	CCTNAGG	1 cut(s)	1127
Eco88I	CYCGRG	5 cut(s)	287, 597, 684, 1640, 1776
Eco91I	GGTNACC	2 cut(s)	1049, 1088
EcoICRI	GAGCTC	3 cut(s)	42, 286, 1103
EcoO109I	RGGNCCY	3 cut(s)	827, 1802, 1829
EcoO65I	GGTNACC	2 cut(s)	1049, 1088
EcoRI	GAATTC	1 cut(s)	293
EcoRII	CCWGG	6 cut(s)	126, 156, 333, 672, 1793, 1871
EcoT14I	CCWWGG	5 cut(s)	678, 731, 1437, 1713, 1880
EcoT22I	ATGCAT	1 cut(s)	1671
EcoT38I	GRGCYC	4 cut(s)	44, 288, 657, 1105
ErhI	CCWWGG	5 cut(s)	678, 731, 1437, 1713, 1880
Esp3I	CGTCTC	1 cut(s)	1873
FaqI	GGGAC	7 cut(s)	814, 840, 1241, 1708, 1757, 1794, 1815
FauI	CCCGC	3 cut(s)	817, 1591, 1840
FauNDI	CATATG	1 cut(s)	1665
FbaI	TGATCA	1 cut(s)	868
FblI	GTMKAC	3 cut(s)	513, 586, 1764
Fnu4HI	GCNGC	4 cut(s)	21, 339, 342, 1452
FokI	GGATG	7 cut(s)	470, 532, 898, 941, 1777, 1832, 1863
FriOI	GRGCYC	4 cut(s)	44, 288, 657, 1105
Fsp4HI	GCNGC	4 cut(s)	21, 339, 342, 1452
FspBI	CTAG	5 cut(s)	404, 471, 605, 831, 920
GlaI	GCGC	1 cut(s)	1895
GluI	GCNGC	4 cut(s)	21, 339, 342, 1452
GsaI	CCCAGC	2 cut(s)	96, 1894
GsuI	CTGGAG	1 cut(s)	1855
HaeII	RGCGCY	1 cut(s)	1897
HgaI	GACGC	1 cut(s)	764
HhaI	GCGC	1 cut(s)	1896
Hin6I	GCGC	1 cut(s)	1894
HinP1I	GCGC	1 cut(s)	1894
HincII	GTYRAC	1 cut(s)	1393
HindII	GTYRAC	1 cut(s)	1393
HindIII	AAGCTT	1 cut(s)	1424
HinfI	GANTC	6 cut(s)	62, 116, 359, 635, 1254, 1573
HphI	GGTGA	6 cut(s)	196, 212, 697, 1043, 1264, 1352
Hpy166II	GTNNAC	9 cut(s)	85, 448, 514, 587, 705, 1187, 1234, 1393, 1765
Hpy188I	TCNGA	9 cut(s)	67, 179, 358, 412, 699, 853, 1484, 1540, 1612
Hpy188III	TCNNGA	5 cut(s)	49, 982, 1405, 1570, 1753
Hpy8I	GTNNAC	9 cut(s)	85, 448, 514, 587, 705, 1187, 1234, 1393, 1765
Hpy99I	CGWCG	1 cut(s)	1820
HpyAV	CCTTC	3 cut(s)	378, 547, 1040
HpyCH4III	ACNGT	6 cut(s)	208, 559, 847, 1209, 1376, 1722
HpyCH4IV	ACGT	2 cut(s)	9, 444
HpyCH4V	TGCA	4 cut(s)	113, 241, 1524, 1669
HpyF10VI	GCNNNNNNNGC	8 cut(s)	26, 238, 480, 542, 578, 1226, 1355, 1499
HpyF3I	CTNAG	8 cut(s)	43, 176, 409, 765, 959, 1127, 1335, 1609
HpySE526I	ACGT	2 cut(s)	9, 444
HspAI	GCGC	1 cut(s)	1894
KpnI	GGTACC	2 cut(s)	1287, 1605
KroI	GCCGGC	1 cut(s)	479
KroNI	GCCGGC	1 cut(s)	481
Ksp22I	TGATCA	1 cut(s)	868
Kzo9I	GATC	9 cut(s)	412, 452, 868, 978, 1106, 1338, 1535, 1786, 1812
LmnI	GCTCC	3 cut(s)	476, 652, 1100
Lsp1109I	GCAGC	2 cut(s)	32, 350
LweI	GCATC	7 cut(s)	32, 492, 554, 1585, 1618, 1699, 1885
MaeI	CTAG	5 cut(s)	404, 471, 605, 831, 920
MaeII	ACGT	2 cut(s)	9, 444
MaeIII	GTNAC	6 cut(s)	101, 1033, 1049, 1088, 1270, 1700
MalI	GATC	9 cut(s)	414, 454, 870, 980, 1108, 1340, 1537, 1788, 1814
MboI	GATC	9 cut(s)	412, 452, 868, 978, 1106, 1338, 1535, 1786, 1812
MboII	GAAGA	4 cut(s)	619, 960, 1662, 1832
MflI	RGATCY	2 cut(s)	412, 1338
MhlI	GDGCHC	4 cut(s)	44, 288, 657, 1105
MlsI	TGGCCA	1 cut(s)	1147
MluCI	AATT	5 cut(s)	267, 293, 530, 894, 1736
MluNI	TGGCCA	1 cut(s)	1147
MlyI	GAGTC	4 cut(s)	56, 125, 1263, 1582
MmeI	TCCRAC	2 cut(s)	483, 637
Mox20I	TGGCCA	1 cut(s)	1147
Mph1103I	ATGCAT	1 cut(s)	1671
MroNI	GCCGGC	1 cut(s)	479
MscI	TGGCCA	1 cut(s)	1147
MseI	TTAA	3 cut(s)	266, 270, 1733
MslI	CAYNNNNRTG	4 cut(s)	980, 1077, 1199, 1626
Msp20I	TGGCCA	1 cut(s)	1147
MspA1I	CMGCKG	1 cut(s)	341
MvaI	CCWGG	6 cut(s)	128, 158, 335, 674, 1795, 1873
MvnI	CGCG	1 cut(s)	824
MwoI	GCNNNNNNNGC	8 cut(s)	26, 238, 480, 542, 578, 1226, 1355, 1499
NaeI	GCCGGC	1 cut(s)	481
NcoI	CCATGG	1 cut(s)	1880
NdeI	CATATG	1 cut(s)	1665
NdeII	GATC	9 cut(s)	412, 452, 868, 978, 1106, 1338, 1535, 1786, 1812
NgoMIV	GCCGGC	1 cut(s)	479
NheI	GCTAGC	1 cut(s)	403
NmeAIII	GCCGAG	1 cut(s)	1308
NmuCI	GTSAC	3 cut(s)	1033, 1049, 1270
NsiI	ATGCAT	1 cut(s)	1671
NspI	RCATGY	1 cut(s)	664
OliI	CACNNNNGTG	1 cut(s)	1077
PacI	TTAATTAA	1 cut(s)	270
PaeR7I	CTCGAG	1 cut(s)	1640
PagI	TCATGA	2 cut(s)	981, 1752
PceI	AGGCCT	1 cut(s)	677
PciI	ACATGT	1 cut(s)	660
PcsI	WCGNNNNNNNCGW	3 cut(s)	294, 1380, 1815
PdiI	GCCGGC	1 cut(s)	481
PfeI	GAWTC	2 cut(s)	359, 635
PflFI	GACNNNGTC	2 cut(s)	1748, 1862
PflMI	CCANNNNNTGG	1 cut(s)	679
PfoI	TCCNGGA	4 cut(s)	1257, 1461, 1724, 1793
PkrI	GCNGC	4 cut(s)	22, 340, 343, 1453
PleI	GAGTC	4 cut(s)	56, 124, 1262, 1581
PpsI	GAGTC	4 cut(s)	56, 124, 1262, 1581
Ppu21I	YACGTR	2 cut(s)	10, 445
PpuMI	RGGWCCY	2 cut(s)	827, 1829
PscI	ACATGT	1 cut(s)	660
Psp124BI	GAGCTC	3 cut(s)	44, 288, 1105
Psp5II	RGGWCCY	2 cut(s)	827, 1829
Psp6I	CCWGG	6 cut(s)	126, 156, 333, 672, 1793, 1871
PspEI	GGTNACC	2 cut(s)	1049, 1088
PspFI	CCCAGC	2 cut(s)	92, 1890
PspGI	CCWGG	6 cut(s)	126, 156, 333, 672, 1793, 1871
PspPPI	RGGWCCY	2 cut(s)	827, 1829
PspXI	VCTCGAGB	1 cut(s)	1640
PstNI	CAGNNNCTG	1 cut(s)	1897
PsuI	RGATCY	2 cut(s)	412, 1338
PsyI	GACNNNGTC	2 cut(s)	1748, 1862
RsaI	GTAC	9 cut(s)	77, 86, 308, 521, 1285, 1548, 1603, 1719, 1904
RsaNI	GTAC	9 cut(s)	76, 85, 307, 520, 1284, 1547, 1602, 1718, 1903
RseI	CAYNNNNRTG	4 cut(s)	980, 1077, 1199, 1626
SacI	GAGCTC	3 cut(s)	44, 288, 1105
SaqAI	TTAA	3 cut(s)	266, 270, 1733
SatI	GCNGC	4 cut(s)	21, 339, 342, 1452
Sau3AI	GATC	9 cut(s)	412, 452, 868, 978, 1106, 1338, 1535, 1786, 1812
ScaI	AGTACT	1 cut(s)	1548
SchI	GAGTC	4 cut(s)	56, 125, 1263, 1582
SduI	GDGCHC	4 cut(s)	44, 288, 657, 1105
SfaNI	GCATC	7 cut(s)	32, 492, 554, 1585, 1618, 1699, 1885
SfcI	CTRYAG	1 cut(s)	997
Sfr274I	CTCGAG	1 cut(s)	1640
SinI	GGWCC	5 cut(s)	610, 801, 827, 889, 1829
SlaI	CTCGAG	1 cut(s)	1640
SmaI	CCCGGG	3 cut(s)	599, 686, 1778
SmiMI	CAYNNNNRTG	4 cut(s)	980, 1077, 1199, 1626
SmlI	CTYRAG	1 cut(s)	1640
SmoI	CTYRAG	1 cut(s)	1640
SnaBI	TACGTA	1 cut(s)	10
SrfI	GCCCGGGC	1 cut(s)	686
Sse9I	AATT	5 cut(s)	267, 293, 530, 894, 1736
SseBI	AGGCCT	1 cut(s)	677
SsiI	CCGC	9 cut(s)	341, 401, 422, 474, 824, 1452, 1598, 1687, 1833
SspI	AATATT	1 cut(s)	858
SspMI	CTAG	5 cut(s)	404, 471, 605, 831, 920
SstI	GAGCTC	3 cut(s)	44, 288, 1105
StuI	AGGCCT	1 cut(s)	677
StyI	CCWWGG	5 cut(s)	678, 731, 1437, 1713, 1880
TaaI	ACNGT	6 cut(s)	208, 559, 847, 1209, 1376, 1722
TaiI	ACGT	2 cut(s)	12, 447
TasI	AATT	5 cut(s)	267, 293, 530, 894, 1736
TatI	WGTACW	2 cut(s)	84, 1546
TauI	GCSGC	2 cut(s)	344, 1454
TfiI	GAWTC	2 cut(s)	359, 635
Tru1I	TTAA	3 cut(s)	266, 270, 1733
Tru9I	TTAA	3 cut(s)	266, 270, 1733
TscAI	CASTG	4 cut(s)	87, 112, 153, 637
TseFI	GTSAC	3 cut(s)	1033, 1049, 1270
TseI	GCWGC	2 cut(s)	20, 338
Tsp45I	GTSAC	3 cut(s)	1033, 1049, 1270
TspDTI	ATGAA	4 cut(s)	870, 998, 1769, 1834
TspGWI	ACGGA	2 cut(s)	1079, 1511
TspMI	CCCGGG	3 cut(s)	597, 684, 1776
TspRI	CASTG	4 cut(s)	87, 112, 153, 637
Tth111I	GACNNNGTC	2 cut(s)	1748, 1862
Van91I	CCANNNNNTGG	1 cut(s)	679
VpaK11BI	GGWCC	5 cut(s)	610, 801, 827, 889, 1829
XapI	RAATTY	2 cut(s)	293, 530
XceI	RCATGY	1 cut(s)	664
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1228, 1247
XhoI	CTCGAG	1 cut(s)	1640
XmaI	CCCGGG	3 cut(s)	597, 684, 1776
XmiI	GTMKAC	3 cut(s)	513, 586, 1764
XspI	CTAG	5 cut(s)	404, 471, 605, 831, 920
ZrmI	AGTACT	1 cut(s)	1548
Zsp2I	ATGCAT	1 cut(s)	1671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.