Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

35627469 .. 35628785

Gene Structure 1317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G024170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGGTATCCCCAACCTACCGGAACGAGGTCCAATCTCTTGTAGGCAAGGTGGCCGCCCTGTCAAGATTCATCTCCAGGCTGACAGACAAGTGTACCCCTTTCTTCAAACTGCTAAAAACCCAACACGTCGAGGTGATAGCCTGGACAGCGGAGCACGAGGCTGCTTTCCTTGGCTTGAAGTCGTACCTGTCACAGGTACCTCTACTCTACAAACCTGTTCCCGGAGAAATGCTCTACGTATATCTGGCAGCATCGGCAACTGCTGTGAGCTCAGTCCTGATTAGGAAGGACTCCGATTGCGAGTACCCAGTGTACTACGCTGGGAAAGGTTACACTGGTGCAGAGTCCAAGTACCCGGACATTGAAAGAGTAGCACTGGCCCTCCTGGTATCAGCCCGGAAGCTCAGACATTACTTCCAAGCACATTCTATCACCGTTTTCACTAATCACCCATTGAGGCAGGTTTTGCAGAAACCAGAGACATCGGGCAGGTTAATTAAGTGGGCCATCGAGCTTGGGGAATTCGATATCAAGTACCTACCCCGGACAGCCATCAAAGGCCAGGCAGCGGCCGATTTTATTTCCGAATCAATCCCTTCCCATGACCCAAACAAGGAACCACCTGAACCGCTAGCCTCGGATCCACCTCCGCCAAGCACTTGGCGATTATACGTGGACGGATCATCCAACAAGAAAACTAGCGGAGCCGGCATCCTACTCATTAGCCCGGACGAGCAAGTCTACGAGTACGCCCTCAAATTTGCCTTCAAAGCATCCAATAATACCGCAGAATACGAGGCACTCATAGCCGGTCTGCAGATCGCCCGGGAACTAGGGGTCCAACACCTCCATATCTTCAGTGATTCCCAGTTGGTCGTAAACCAGGTCAGCGGTAACTTCGAGGCAAAGGAGCCCCACATGTCCTCCTACCAGGCCTTGGCCCGGGCTTTAGTTCAGAGGTTCACCTCCTACATTTTTACCCAAATACCGAGGGCAGAAAACGACAAGGCAGACGCTCTTGCTAAGCTCGCATCAACTTCTCCAAACCCTACCTATGGGACCACTAAAGTCGAAATACTCGCGGGACCTAGCACTTCCAAAACGGTGTCAGAAATATTTTCGGTGGATCACAAACCTTCATGGATGGACCCAATTTTGAAATACATGGTTGATGGCCTAACACCGGATGATAAGGTCGAGGCCAGAAGACTGCAGCTAAGGTCAGCTCGATACACGATCATGAATGGCAAACTCTACAGAAGAGGACATTGCTTTCCCAACCTGAAGTGTGTGACACCGGAGGAAGGTCACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

438

Amino Acids

48.82

Weight (kDa)

8.84

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RT_RNaseH_2	PF17919	48 - 146	9.3e-19	RNase H-like domain found in reverse transcriptase
RT_RNaseH	PF17917	77 - 175	3.9e-18	RNase H-like domain found in reverse transcriptase
RNase_H	PF00075	222 - 301	4.6e-09	RNase H
RVT_3	PF13456	225 - 344	1.1e-22	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	737
Acc36I	ACCTGC	2 cut(s)	451, 480
Acc65I	GGTACC	1 cut(s)	196
AccB1I	GGYRCC	1 cut(s)	196
AccB7I	CCANNNNNTGG	1 cut(s)	937
AccI	GTMKAC	1 cut(s)	741
AccII	CGCG	1 cut(s)	1082
AciI	CCGC	9 cut(s)	54, 149, 569, 629, 650, 702, 786, 891, 1082
AclWI	GGATC	4 cut(s)	635, 648, 688, 1134
AcoI	YGGCCR	2 cut(s)	51, 570
AcsI	RAATTY	2 cut(s)	521, 758
AcuI	CTGAAG	2 cut(s)	841, 1304
AfaI	GTAC	8 cut(s)	94, 185, 198, 305, 314, 353, 536, 749
AflIII	ACRYGT	2 cut(s)	124, 918
AgsI	TTSAA	5 cut(s)	106, 178, 365, 769, 1159
AjiI	CACGTC	1 cut(s)	127
AjnI	CCWGG	6 cut(s)	74, 140, 384, 561, 882, 930
AloI	GAACNNNNNNTCC	2 cut(s)	822, 854
AluBI	AGCT	6 cut(s)	270, 403, 514, 1027, 1216, 1226
AluI	AGCT	6 cut(s)	270, 403, 514, 1027, 1216, 1226
Alw21I	GWGCWC	2 cut(s)	156, 272
Alw26I	GTCTC	1 cut(s)	473
AlwI	GGATC	4 cut(s)	635, 648, 688, 1134
Ama87I	CYCGRG	2 cut(s)	825, 942
AoxI	GGCC	9 cut(s)	51, 378, 504, 559, 570, 933, 939, 1174, 1200
ApeKI	GCWGC	4 cut(s)	161, 248, 566, 1213
ApoI	RAATTY	2 cut(s)	521, 758
Asp718I	GGTACC	1 cut(s)	196
AspS9I	GGNCC	8 cut(s)	28, 379, 504, 838, 940, 1059, 1085, 1147
AsuC2I	CCSGG	9 cut(s)	222, 356, 397, 544, 728, 826, 827, 943, 944
AsuHPI	GGTGA	4 cut(s)	145, 424, 440, 955
AsuNHI	GCTAGC	1 cut(s)	631
AvaI	CYCGRG	2 cut(s)	825, 942
AvaII	GGWCC	5 cut(s)	28, 838, 1059, 1085, 1147
BaeI	ACNNNNGTAYC	2 cut(s)	76, 109
BamHI	GGATCC	1 cut(s)	640
BanI	GGYRCC	1 cut(s)	196
BanII	GRGCYC	2 cut(s)	272, 915
BauI	CACGAG	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	1213
Bbv12I	GWGCWC	2 cut(s)	156, 272
BbvI	GCAGC	4 cut(s)	148, 260, 578, 1225
BccI	CCATC	4 cut(s)	515, 560, 1138, 1166
BciT130I	CCWGG	6 cut(s)	76, 142, 386, 563, 884, 932
BciVI	GTATCC	1 cut(s)	16
BcnI	CCSGG	9 cut(s)	222, 356, 397, 544, 728, 826, 827, 943, 944
BcoDI	GTCTC	1 cut(s)	473
BfaI	CTAG	4 cut(s)	632, 699, 833, 1089
BfmI	CTRYAG	3 cut(s)	815, 1211, 1255
BfuAI	ACCTGC	2 cut(s)	451, 480
BfuI	GTATCC	1 cut(s)	16
BisI	GCNGC	6 cut(s)	54, 162, 249, 567, 570, 1214
BlpI	GCTNAGC	1 cut(s)	1023
BlsI	GCNGC	6 cut(s)	55, 163, 250, 568, 571, 1215
Bme18I	GGWCC	5 cut(s)	28, 838, 1059, 1085, 1147
BmeT110I	CYCGRG	2 cut(s)	825, 942
BmgBI	CACGTC	1 cut(s)	127
BmgT120I	GGNCC	8 cut(s)	28, 379, 504, 838, 940, 1059, 1085, 1147
BmiI	GGNNCC	9 cut(s)	198, 618, 642, 706, 839, 912, 1060, 1086, 1149
BmrI	ACTGGG	2 cut(s)	302, 862
BmsI	GCATC	4 cut(s)	260, 720, 782, 1040
BmtI	GCTAGC	1 cut(s)	635
BmuI	ACTGGG	2 cut(s)	302, 862
BpiI	GAAGAC	1 cut(s)	1213
BplI	GAGNNNNNCTC	2 cut(s)	216, 248
BpmI	CTGGAG	1 cut(s)	58
Bpu10I	CCTNAGC	1 cut(s)	1217
Bpu1102I	GCTNAGC	1 cut(s)	1023
BpuMI	CCSGG	9 cut(s)	222, 356, 397, 544, 728, 826, 827, 943, 944
BsaAI	YACGTR	2 cut(s)	238, 673
BsaJI	CCNNGG	7 cut(s)	169, 542, 636, 825, 936, 942, 989
BsaWI	WCCGGW	3 cut(s)	18, 1183, 1297
BsaXI	ACNNNNNCTCC	4 cut(s)	366, 396, 908, 938
Bse118I	RCCGGY	2 cut(s)	707, 809
Bse1I	ACTGG	4 cut(s)	308, 340, 381, 868
Bse3DI	GCAATG	1 cut(s)	1267
BseBI	CCWGG	6 cut(s)	76, 142, 386, 563, 884, 932
BseDI	CCNNGG	7 cut(s)	169, 542, 636, 825, 936, 942, 989
BseGI	GGATG	5 cut(s)	683, 711, 773, 1149, 1192
BseMI	GCAATG	1 cut(s)	1267
BseMII	CTCAG	2 cut(s)	285, 418
BseNI	ACTGG	4 cut(s)	308, 340, 381, 868
BseX3I	CGGCCG	1 cut(s)	570
BseXI	GCAGC	4 cut(s)	148, 260, 578, 1225
BseYI	CCCAGC	1 cut(s)	320
BsgI	GTGCAG	1 cut(s)	360
Bsh1236I	CGCG	1 cut(s)	1082
Bsh1285I	CGRYCG	1 cut(s)	573
BshFI	GGCC	9 cut(s)	53, 380, 506, 561, 572, 935, 941, 1176, 1202
BshNI	GGYRCC	1 cut(s)	196
BsiEI	CGRYCG	1 cut(s)	573
BsiHKAI	GWGCWC	2 cut(s)	156, 272
BsiHKCI	CYCGRG	2 cut(s)	825, 942
BslFI	GGGAC	2 cut(s)	1072, 1098
BsmAI	GTCTC	1 cut(s)	473
BsmFI	GGGAC	2 cut(s)	1072, 1098
BsnI	GGCC	9 cut(s)	53, 380, 506, 561, 572, 935, 941, 1176, 1202
BsoBI	CYCGRG	2 cut(s)	825, 942
Bsp1286I	GDGCHC	3 cut(s)	156, 272, 915
Bsp143I	GATC	5 cut(s)	640, 680, 819, 1126, 1236
Bsp1720I	GCTNAGC	1 cut(s)	1023
BspACI	CCGC	9 cut(s)	54, 149, 569, 629, 650, 702, 786, 891, 1082
BspANI	GGCC	9 cut(s)	53, 380, 506, 561, 572, 935, 941, 1176, 1202
BspCNI	CTCAG	2 cut(s)	284, 417
BspFNI	CGCG	1 cut(s)	1082
BspHI	TCATGA	1 cut(s)	1239
BspLI	GGNNCC	9 cut(s)	198, 618, 642, 706, 839, 912, 1060, 1086, 1149
BspMAI	CTGCAG	2 cut(s)	819, 1215
BspMI	ACCTGC	2 cut(s)	451, 480
BspOI	GCTAGC	1 cut(s)	635
BspPI	GGATC	4 cut(s)	635, 648, 688, 1134
BspT107I	GGYRCC	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	1267
BsrFI	RCCGGY	2 cut(s)	707, 809
BsrI	ACTGG	4 cut(s)	308, 340, 381, 868
BssAI	RCCGGY	2 cut(s)	707, 809
BssECI	CCNNGG	7 cut(s)	169, 542, 636, 825, 936, 942, 989
BssMI	GATC	5 cut(s)	640, 680, 819, 1126, 1236
BssSI	CACGAG	1 cut(s)	155
BssT1I	CCWWGG	2 cut(s)	169, 936
Bst2BI	CACGAG	1 cut(s)	155
Bst2UI	CCWGG	6 cut(s)	76, 142, 386, 563, 884, 932
Bst4CI	ACNGT	2 cut(s)	436, 1105
Bst6I	CTCTTC	1 cut(s)	1255
BstAPI	GCANNNNNTGC	1 cut(s)	466
BstBAI	YACGTR	2 cut(s)	238, 673
BstC8I	GCNNGC	3 cut(s)	633, 709, 1029
BstDEI	CTNAG	4 cut(s)	271, 404, 1023, 1217
BstENI	CCTNNNNNAGG	1 cut(s)	191
BstF5I	GGATG	5 cut(s)	683, 711, 773, 1149, 1192
BstFNI	CGCG	1 cut(s)	1082
BstKTI	GATC	5 cut(s)	643, 683, 822, 1129, 1239
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	5 cut(s)	640, 680, 819, 1126, 1236
BstMCI	CGRYCG	1 cut(s)	573
BstMWI	GCNNNNNNNGC	7 cut(s)	146, 254, 466, 708, 770, 806, 1028
BstNI	CCWGG	6 cut(s)	76, 142, 386, 563, 884, 932
BstNSI	RCATGY	1 cut(s)	922
BstSFI	CTRYAG	3 cut(s)	815, 1211, 1255
BstSNI	TACGTA	1 cut(s)	238
BstUI	CGCG	1 cut(s)	1082
BstV1I	GCAGC	4 cut(s)	148, 260, 578, 1225
BstV2I	GAAGAC	1 cut(s)	1213
BstX2I	RGATCY	1 cut(s)	640
BstXI	CCANNNNNNTGG	1 cut(s)	660
BstYI	RGATCY	1 cut(s)	640
BstZI	CGGCCG	1 cut(s)	570
BsuI	GTATCC	1 cut(s)	16
BsuRI	GGCC	9 cut(s)	53, 380, 506, 561, 572, 935, 941, 1176, 1202
BtrI	CACGTC	1 cut(s)	127
BtsCI	GGATG	5 cut(s)	683, 711, 773, 1149, 1192
BtsIMutI	CAGTG	4 cut(s)	315, 333, 374, 865
BveI	ACCTGC	2 cut(s)	451, 480
Cac8I	GCNNGC	3 cut(s)	633, 709, 1029
CciI	TCATGA	1 cut(s)	1239
Cfr10I	RCCGGY	2 cut(s)	707, 809
Cfr13I	GGNCC	8 cut(s)	28, 379, 504, 838, 940, 1059, 1085, 1147
Cfr9I	CCCGGG	2 cut(s)	825, 942
CseI	GACGC	1 cut(s)	1022
CsiI	ACCWGGT	1 cut(s)	882
Csp6I	GTAC	8 cut(s)	93, 184, 197, 304, 313, 352, 535, 748
CviAII	CATG	5 cut(s)	602, 919, 1140, 1165, 1240
CviQI	GTAC	8 cut(s)	93, 184, 197, 304, 313, 352, 535, 748
DdeI	CTNAG	4 cut(s)	271, 404, 1023, 1217
DpnI	GATC	5 cut(s)	642, 682, 821, 1128, 1238
DpnII	GATC	5 cut(s)	640, 680, 819, 1126, 1236
DrdI	GACNNNNNNGTC	1 cut(s)	737
DseDI	GACNNNNNNGTC	1 cut(s)	737
EaeI	YGGCCR	2 cut(s)	51, 570
EagI	CGGCCG	1 cut(s)	570
Eam1104I	CTCTTC	1 cut(s)	1255
EarI	CTCTTC	1 cut(s)	1255
EciI	GGCGGA	1 cut(s)	639
Ecl136II	GAGCTC	1 cut(s)	270
EclXI	CGGCCG	1 cut(s)	570
Eco105I	TACGTA	1 cut(s)	238
Eco130I	CCWWGG	2 cut(s)	169, 936
Eco147I	AGGCCT	1 cut(s)	935
Eco24I	GRGCYC	2 cut(s)	272, 915
Eco32I	GATATC	1 cut(s)	529
Eco47I	GGWCC	5 cut(s)	28, 838, 1059, 1085, 1147
Eco52I	CGGCCG	1 cut(s)	570
Eco53kI	GAGCTC	1 cut(s)	270
Eco57I	CTGAAG	2 cut(s)	841, 1304
Eco88I	CYCGRG	2 cut(s)	825, 942
EcoICRI	GAGCTC	1 cut(s)	270
EcoNI	CCTNNNNNAGG	1 cut(s)	191
EcoO109I	RGGNCCY	1 cut(s)	1085
EcoRI	GAATTC	1 cut(s)	521
EcoRII	CCWGG	6 cut(s)	74, 140, 384, 561, 882, 930
EcoRV	GATATC	1 cut(s)	529
EcoT14I	CCWWGG	2 cut(s)	169, 936
EcoT38I	GRGCYC	2 cut(s)	272, 915
ErhI	CCWWGG	2 cut(s)	169, 936
FaeI	CATG	5 cut(s)	605, 922, 1143, 1168, 1243
FaqI	GGGAC	2 cut(s)	1072, 1098
FatI	CATG	5 cut(s)	601, 918, 1139, 1164, 1239
FauI	CCCGC	1 cut(s)	1075
FblI	GTMKAC	1 cut(s)	741
Fnu4HI	GCNGC	6 cut(s)	54, 162, 249, 567, 570, 1214
FokI	GGATG	5 cut(s)	670, 698, 760, 1156, 1199
FriOI	GRGCYC	2 cut(s)	272, 915
Fsp4HI	GCNGC	6 cut(s)	54, 162, 249, 567, 570, 1214
FspBI	CTAG	4 cut(s)	632, 699, 833, 1089
GluI	GCNGC	6 cut(s)	54, 162, 249, 567, 570, 1214
GsaI	CCCAGC	1 cut(s)	324
GsuI	CTGGAG	1 cut(s)	58
HaeIII	GGCC	9 cut(s)	53, 380, 506, 561, 572, 935, 941, 1176, 1202
HgaI	GACGC	1 cut(s)	1022
Hin1II	CATG	5 cut(s)	605, 922, 1143, 1168, 1243
HinfI	GANTC	5 cut(s)	66, 290, 344, 587, 863
HphI	GGTGA	4 cut(s)	145, 424, 440, 955
Hpy166II	GTNNAC	6 cut(s)	93, 313, 676, 742, 880, 963
Hpy188I	TCNGA	6 cut(s)	295, 407, 586, 640, 957, 1111
Hpy188III	TCNNGA	3 cut(s)	63, 277, 1240
Hpy8I	GTNNAC	6 cut(s)	93, 313, 676, 742, 880, 963
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	5 cut(s)	280, 606, 775, 1146, 1298
HpyCH4III	ACNGT	2 cut(s)	436, 1105
HpyCH4IV	ACGT	3 cut(s)	126, 237, 672
HpyCH4V	TGCA	4 cut(s)	341, 469, 817, 1213
HpyF10VI	GCNNNNNNNGC	7 cut(s)	146, 254, 466, 708, 770, 806, 1028
HpyF3I	CTNAG	4 cut(s)	271, 404, 1023, 1217
HpySE526I	ACGT	3 cut(s)	126, 237, 672
Hsp92II	CATG	5 cut(s)	605, 922, 1143, 1168, 1243
KpnI	GGTACC	1 cut(s)	200
KroI	GCCGGC	1 cut(s)	707
KroNI	GCCGGC	1 cut(s)	709
Kzo9I	GATC	5 cut(s)	640, 680, 819, 1126, 1236
LmnI	GCTCC	3 cut(s)	151, 704, 910
Lsp1109I	GCAGC	4 cut(s)	148, 260, 578, 1225
LweI	GCATC	4 cut(s)	260, 720, 782, 1040
MabI	ACCWGGT	1 cut(s)	882
MaeI	CTAG	4 cut(s)	632, 699, 833, 1089
MaeII	ACGT	3 cut(s)	126, 237, 672
MaeIII	GTNAC	5 cut(s)	189, 329, 893, 1291, 1307
MalI	GATC	5 cut(s)	642, 682, 821, 1128, 1238
MboI	GATC	5 cut(s)	640, 680, 819, 1126, 1236
MboII	GAAGA	4 cut(s)	94, 847, 1218, 1272
MflI	RGATCY	1 cut(s)	640
MhlI	GDGCHC	3 cut(s)	156, 272, 915
MluCI	AATT	4 cut(s)	495, 521, 758, 1152
MlyI	GAGTC	2 cut(s)	284, 353
MmeI	TCCRAC	2 cut(s)	711, 865
MroNI	GCCGGC	1 cut(s)	707
MseI	TTAA	2 cut(s)	494, 498
MslI	CAYNNNNRTG	1 cut(s)	1238
MspA1I	CMGCKG	3 cut(s)	149, 569, 891
MvaI	CCWGG	6 cut(s)	76, 142, 386, 563, 884, 932
MvnI	CGCG	1 cut(s)	1082
MwoI	GCNNNNNNNGC	7 cut(s)	146, 254, 466, 708, 770, 806, 1028
NaeI	GCCGGC	1 cut(s)	709
NciI	CCSGG	9 cut(s)	222, 356, 397, 544, 728, 826, 827, 943, 944
NdeII	GATC	5 cut(s)	640, 680, 819, 1126, 1236
NgoMIV	GCCGGC	1 cut(s)	707
NheI	GCTAGC	1 cut(s)	631
NlaIII	CATG	5 cut(s)	605, 922, 1143, 1168, 1243
NlaIV	GGNNCC	9 cut(s)	198, 618, 642, 706, 839, 912, 1060, 1086, 1149
NmuCI	GTSAC	3 cut(s)	189, 1291, 1307
NspI	RCATGY	1 cut(s)	922
PacI	TTAATTAA	1 cut(s)	498
PagI	TCATGA	1 cut(s)	1239
PceI	AGGCCT	1 cut(s)	935
PciI	ACATGT	1 cut(s)	918
PdiI	GCCGGC	1 cut(s)	709
PfeI	GAWTC	3 cut(s)	66, 587, 863
PflMI	CCANNNNNTGG	1 cut(s)	937
PfoI	TCCNGGA	1 cut(s)	220
PkrI	GCNGC	6 cut(s)	55, 163, 250, 568, 571, 1215
PleI	GAGTC	2 cut(s)	284, 352
PpsI	GAGTC	2 cut(s)	284, 352
Ppu21I	YACGTR	2 cut(s)	238, 673
PpuMI	RGGWCCY	1 cut(s)	1085
PscI	ACATGT	1 cut(s)	918
Psp124BI	GAGCTC	1 cut(s)	272
Psp5II	RGGWCCY	1 cut(s)	1085
Psp6I	CCWGG	6 cut(s)	74, 140, 384, 561, 882, 930
PspFI	CCCAGC	1 cut(s)	320
PspGI	CCWGG	6 cut(s)	74, 140, 384, 561, 882, 930
PspN4I	GGNNCC	9 cut(s)	198, 618, 642, 706, 839, 912, 1060, 1086, 1149
PspPI	GGNCC	8 cut(s)	28, 379, 504, 838, 940, 1059, 1085, 1147
PspPPI	RGGWCCY	1 cut(s)	1085
PstI	CTGCAG	2 cut(s)	819, 1215
PsuI	RGATCY	1 cut(s)	640
RsaI	GTAC	8 cut(s)	94, 185, 198, 305, 314, 353, 536, 749
RsaNI	GTAC	8 cut(s)	93, 184, 197, 304, 313, 352, 535, 748
RseI	CAYNNNNRTG	1 cut(s)	1238
SacI	GAGCTC	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	494, 498
SatI	GCNGC	6 cut(s)	54, 162, 249, 567, 570, 1214
Sau3AI	GATC	5 cut(s)	640, 680, 819, 1126, 1236
Sau96I	GGNCC	8 cut(s)	28, 379, 504, 838, 940, 1059, 1085, 1147
SchI	GAGTC	2 cut(s)	284, 353
SduI	GDGCHC	3 cut(s)	156, 272, 915
SexAI	ACCWGGT	1 cut(s)	882
SfaNI	GCATC	4 cut(s)	260, 720, 782, 1040
SfcI	CTRYAG	3 cut(s)	815, 1211, 1255
SinI	GGWCC	5 cut(s)	28, 838, 1059, 1085, 1147
SmaI	CCCGGG	2 cut(s)	827, 944
SmiMI	CAYNNNNRTG	1 cut(s)	1238
SnaBI	TACGTA	1 cut(s)	238
SrfI	GCCCGGGC	1 cut(s)	944
Sse9I	AATT	4 cut(s)	495, 521, 758, 1152
SseBI	AGGCCT	1 cut(s)	935
SsiI	CCGC	9 cut(s)	54, 149, 569, 629, 650, 702, 786, 891, 1082
SspI	AATATT	1 cut(s)	1116
SspMI	CTAG	4 cut(s)	632, 699, 833, 1089
SstI	GAGCTC	1 cut(s)	272
StuI	AGGCCT	1 cut(s)	935
StyI	CCWWGG	2 cut(s)	169, 936
TaaI	ACNGT	2 cut(s)	436, 1105
TaiI	ACGT	3 cut(s)	129, 240, 675
TaqI	TCGA	7 cut(s)	129, 510, 525, 900, 1071, 1197, 1228
TasI	AATT	4 cut(s)	495, 521, 758, 1152
TatI	WGTACW	1 cut(s)	312
TauI	GCSGC	2 cut(s)	56, 572
TfiI	GAWTC	3 cut(s)	66, 587, 863
Tru1I	TTAA	2 cut(s)	494, 498
Tru9I	TTAA	2 cut(s)	494, 498
TscAI	CASTG	4 cut(s)	315, 340, 381, 865
TseFI	GTSAC	3 cut(s)	189, 1291, 1307
TseI	GCWGC	4 cut(s)	161, 248, 566, 1213
Tsp45I	GTSAC	3 cut(s)	189, 1291, 1307
TspDTI	ATGAA	3 cut(s)	58, 1128, 1256
TspGWI	ACGGA	1 cut(s)	693
TspMI	CCCGGG	2 cut(s)	825, 942
TspRI	CASTG	4 cut(s)	315, 340, 381, 865
Van91I	CCANNNNNTGG	1 cut(s)	937
VpaK11BI	GGWCC	5 cut(s)	28, 838, 1059, 1085, 1147
XagI	CCTNNNNNAGG	1 cut(s)	191
XapI	RAATTY	2 cut(s)	521, 758
XceI	RCATGY	1 cut(s)	922
XmaI	CCCGGG	2 cut(s)	825, 942
XmiI	GTMKAC	1 cut(s)	741
XspI	CTAG	4 cut(s)	632, 699, 833, 1089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.