Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8291955.1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 873

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8291955.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 631 bp

tggcagatttcatcgctgaactcaccgagcatcaggatgaacccaacctaggggcacaagaggccaacacagaaatcgtaaccactggggaaccagcccgccccccagcagcagttagactggaacctccacatagacggcttcgcctgcgccaaggcctgcggcgtcggagtcatcttgaagggacctgggggattaaacgtggaatacgcgttaaaattcaatttcaaagcctcaagcaacatagcagagtcaacgatagcttccaggccaaggaccagcagttagcggcatatttggggtacgtcaagacactactaaaaaaattcaaatttcacaccatcacacagattcccaggaaaaagaatgctaaggctgatttactggcaagattagcaaccactcaatcacaccaaagtccagcagacacaagggtggagtgccttgacaagtcaagcatcaccaaaaccctggcggaaatcttcaacattgtggtcaatcccaactggatggatgaaatcatagagtacaagcgcaatggaacaccacccaccgacaaggtcgaagcaaggcagcttaaacatagggcaaccctctataacatccagaatggcaagatttaccgccaagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

210

Amino Acids

24.07

Weight (kDa)

10.07

Isoelectric Point (pI)

49.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	212
AciI	CCGC	5 cut(s)	99, 162, 289, 475, 624
AcsI	RAATTY	3 cut(s)	218, 325, 331
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	2 cut(s)	304, 529
AfiI	CCNNNNNNNGG	3 cut(s)	49, 50, 273
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	5 cut(s)	181, 223, 229, 330, 486
AjnI	CCWGG	4 cut(s)	187, 266, 355, 470
AleI	CACNNNNGTG	1 cut(s)	433
AluBI	AGCT	2 cut(s)	263, 576
AluI	AGCT	2 cut(s)	263, 576
AoxI	GGCC	3 cut(s)	62, 156, 269
ApeKI	GCWGC	2 cut(s)	109, 573
ApoI	RAATTY	3 cut(s)	218, 325, 331
AspA2I	CCTAGG	1 cut(s)	48
AspLEI	GCGC	2 cut(s)	152, 536
AspS9I	GGNCC	2 cut(s)	185, 276
AsuHPI	GGTGA	2 cut(s)	15, 453
AvaII	GGWCC	2 cut(s)	185, 276
AvrII	CCTAGG	1 cut(s)	48
BaeGI	GKGCMC	1 cut(s)	57
BbvI	GCAGC	2 cut(s)	121, 585
BccI	CCATC	2 cut(s)	349, 504
BceAI	ACGGC	1 cut(s)	154
BciT130I	CCWGG	4 cut(s)	189, 268, 357, 472
BfaI	CTAG	1 cut(s)	49
BisI	GCNGC	4 cut(s)	110, 163, 290, 574
BlnI	CCTAGG	1 cut(s)	48
BlsI	GCNGC	4 cut(s)	111, 164, 291, 575
Bme1390I	CCNGG	4 cut(s)	189, 268, 357, 472
Bme18I	GGWCC	2 cut(s)	185, 276
BmgT120I	GGNCC	2 cut(s)	185, 276
BmiI	GGNNCC	3 cut(s)	92, 125, 186
BmrFI	CCNGG	4 cut(s)	189, 268, 357, 472
BmrI	ACTGGG	1 cut(s)	95
BmsI	GCATC	2 cut(s)	39, 467
BmuI	ACTGGG	1 cut(s)	95
Bpu10I	CCTNAGC	1 cut(s)	371
BpuEI	CTTGAG	1 cut(s)	220
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	7 cut(s)	48, 153, 188, 272, 355, 470, 627
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 50, 273
Bse1I	ACTGG	4 cut(s)	90, 125, 389, 511
Bse3DI	GCAATG	1 cut(s)	543
BseBI	CCWGG	4 cut(s)	189, 268, 357, 472
BseDI	CCNNGG	7 cut(s)	48, 153, 188, 272, 355, 470, 627
BseGI	GGATG	4 cut(s)	42, 515, 519, 602
BseLI	CCNNNNNNNGG	3 cut(s)	49, 50, 273
BseMI	GCAATG	1 cut(s)	543
BseNI	ACTGG	4 cut(s)	90, 125, 389, 511
BseSI	GKGCMC	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	121, 585
BseYI	CCCAGC	1 cut(s)	105
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	3 cut(s)	64, 158, 271
BslFI	GGGAC	1 cut(s)	198
BslI	CCNNNNNNNGG	3 cut(s)	49, 50, 273
BsmFI	GGGAC	1 cut(s)	198
BsmI	GAATGC	1 cut(s)	372
BsnI	GGCC	3 cut(s)	64, 158, 271
Bsp1286I	GDGCHC	1 cut(s)	57
BspACI	CCGC	5 cut(s)	99, 162, 289, 475, 624
BspANI	GGCC	3 cut(s)	64, 158, 271
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	3 cut(s)	92, 125, 186
BsrDI	GCAATG	1 cut(s)	543
BsrI	ACTGG	4 cut(s)	90, 125, 389, 511
BssECI	CCNNGG	7 cut(s)	48, 153, 188, 272, 355, 470, 627
BssNI	GRCGYC	1 cut(s)	165
BssT1I	CCWWGG	4 cut(s)	48, 153, 272, 627
Bst2UI	CCWGG	4 cut(s)	189, 268, 357, 472
BstACI	GRCGYC	1 cut(s)	165
BstC8I	GCNNGC	3 cut(s)	99, 148, 160
BstDEI	CTNAG	1 cut(s)	371
BstF5I	GGATG	4 cut(s)	42, 515, 519, 602
BstFNI	CGCG	1 cut(s)	212
BstHHI	GCGC	2 cut(s)	152, 536
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 147, 394
BstNI	CCWGG	4 cut(s)	189, 268, 357, 472
BstSCI	CCNGG	4 cut(s)	187, 266, 355, 470
BstSLI	GKGCMC	1 cut(s)	57
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	2 cut(s)	121, 585
BstXI	CCANNNNNNTGG	2 cut(s)	471, 510
BsuRI	GGCC	3 cut(s)	64, 158, 271
BtsCI	GGATG	4 cut(s)	42, 515, 519, 602
BtsIMutI	CAGTG	1 cut(s)	83
Cac8I	GCNNGC	3 cut(s)	99, 148, 160
CfoI	GCGC	2 cut(s)	152, 536
Cfr13I	GGNCC	2 cut(s)	185, 276
CseI	GACGC	1 cut(s)	154
Csp6I	GTAC	2 cut(s)	303, 528
CviJI	RGCY	9 cut(s)	64, 97, 141, 158, 233, 263, 271, 376, 576
CviKI_1	RGCY	9 cut(s)	64, 97, 141, 158, 233, 263, 271, 376, 576
CviQI	GTAC	2 cut(s)	303, 528
DdeI	CTNAG	1 cut(s)	371
EciI	GGCGGA	1 cut(s)	490
Eco130I	CCWWGG	4 cut(s)	48, 153, 272, 627
Eco147I	AGGCCT	1 cut(s)	158
Eco47I	GGWCC	2 cut(s)	185, 276
EcoO109I	RGGNCCY	1 cut(s)	185
EcoRII	CCWGG	4 cut(s)	187, 266, 355, 470
EcoT14I	CCWWGG	4 cut(s)	48, 153, 272, 627
ErhI	CCWWGG	4 cut(s)	48, 153, 272, 627
FaiI	YATR	6 cut(s)	134, 245, 294, 523, 584, 599
FaqI	GGGAC	1 cut(s)	198
FauI	CCCGC	1 cut(s)	106
Fnu4HI	GCNGC	4 cut(s)	110, 163, 290, 574
FokI	GGATG	4 cut(s)	49, 522, 526, 589
Fsp4HI	GCNGC	4 cut(s)	110, 163, 290, 574
FspBI	CTAG	1 cut(s)	49
GlaI	GCGC	2 cut(s)	151, 535
GluI	GCNGC	4 cut(s)	110, 163, 290, 574
GsaI	CCCAGC	1 cut(s)	109
HaeIII	GGCC	3 cut(s)	64, 158, 271
HgaI	GACGC	1 cut(s)	154
HhaI	GCGC	2 cut(s)	152, 536
Hin1I	GRCGYC	1 cut(s)	165
Hin6I	GCGC	2 cut(s)	150, 534
HinP1I	GCGC	2 cut(s)	150, 534
HincII	GTYRAC	1 cut(s)	255
HindII	GTYRAC	1 cut(s)	255
HinfI	GANTC	3 cut(s)	171, 251, 351
HphI	GGTGA	2 cut(s)	15, 453
Hpy166II	GTNNAC	1 cut(s)	255
Hpy188I	TCNGA	1 cut(s)	170
Hpy188III	TCNNGA	4 cut(s)	34, 178, 309, 606
Hpy8I	GTNNAC	1 cut(s)	255
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	175
HpyCH4IV	ACGT	2 cut(s)	201, 305
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 147, 394
HpyF3I	CTNAG	1 cut(s)	371
HpySE526I	ACGT	2 cut(s)	201, 305
Hsp92I	GRCGYC	1 cut(s)	165
HspAI	GCGC	2 cut(s)	150, 534
Lsp1109I	GCAGC	2 cut(s)	121, 585
LweI	GCATC	2 cut(s)	39, 467
MaeI	CTAG	1 cut(s)	49
MaeII	ACGT	2 cut(s)	201, 305
MaeIII	GTNAC	1 cut(s)	78
MboII	GAAGA	1 cut(s)	474
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	4 cut(s)	218, 223, 325, 331
MluI	ACGCGT	1 cut(s)	210
MlyI	GAGTC	2 cut(s)	180, 260
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	4 cut(s)	54, 137, 244, 604
MseI	TTAA	3 cut(s)	197, 215, 578
MslI	CAYNNNNRTG	2 cut(s)	35, 433
MspR9I	CCNGG	4 cut(s)	189, 268, 357, 472
Mva1269I	GAATGC	1 cut(s)	372
MvaI	CCWGG	4 cut(s)	189, 268, 357, 472
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	3 cut(s)	61, 147, 394
NlaIV	GGNNCC	3 cut(s)	92, 125, 186
OliI	CACNNNNGTG	1 cut(s)	433
PceI	AGGCCT	1 cut(s)	158
PctI	GAATGC	1 cut(s)	372
PfeI	GAWTC	1 cut(s)	351
PflFI	GACNNNGTC	1 cut(s)	559
PkrI	GCNGC	4 cut(s)	111, 164, 291, 575
PleI	GAGTC	2 cut(s)	179, 259
PpsI	GAGTC	2 cut(s)	179, 259
PpuMI	RGGWCCY	1 cut(s)	185
Psp5II	RGGWCCY	1 cut(s)	185
Psp6I	CCWGG	4 cut(s)	187, 266, 355, 470
PspFI	CCCAGC	1 cut(s)	105
PspGI	CCWGG	4 cut(s)	187, 266, 355, 470
PspN4I	GGNNCC	3 cut(s)	92, 125, 186
PspPI	GGNCC	2 cut(s)	185, 276
PspPPI	RGGWCCY	1 cut(s)	185
PsyI	GACNNNGTC	1 cut(s)	559
RsaI	GTAC	2 cut(s)	304, 529
RsaNI	GTAC	2 cut(s)	303, 528
RseI	CAYNNNNRTG	2 cut(s)	35, 433
SaqAI	TTAA	3 cut(s)	197, 215, 578
SatI	GCNGC	4 cut(s)	110, 163, 290, 574
Sau96I	GGNCC	2 cut(s)	185, 276
SchI	GAGTC	2 cut(s)	180, 260
ScrFI	CCNGG	4 cut(s)	189, 268, 357, 472
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	8 cut(s)	50, 129, 190, 204, 265, 308, 563, 578
SfaNI	GCATC	2 cut(s)	39, 467
SinI	GGWCC	2 cut(s)	185, 276
SmiMI	CAYNNNNRTG	2 cut(s)	35, 433
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	4 cut(s)	218, 223, 325, 331
SseBI	AGGCCT	1 cut(s)	158
SsiI	CCGC	5 cut(s)	99, 162, 289, 475, 624
SspMI	CTAG	1 cut(s)	49
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	4 cut(s)	187, 266, 355, 470
StyI	CCWWGG	4 cut(s)	48, 153, 272, 627
TaiI	ACGT	2 cut(s)	204, 308
TaqI	TCGA	1 cut(s)	563
TasI	AATT	4 cut(s)	218, 223, 325, 331
TatI	WGTACW	1 cut(s)	527
TauI	GCSGC	2 cut(s)	165, 292
TfiI	GAWTC	1 cut(s)	351
Tru1I	TTAA	3 cut(s)	197, 215, 578
Tru9I	TTAA	3 cut(s)	197, 215, 578
TscAI	CASTG	1 cut(s)	90
TseI	GCWGC	2 cut(s)	109, 573
TspDTI	ATGAA	2 cut(s)	53, 530
TspRI	CASTG	1 cut(s)	90
Tth111I	GACNNNGTC	1 cut(s)	559
VpaK11BI	GGWCC	2 cut(s)	185, 276
XapI	RAATTY	3 cut(s)	218, 325, 331
XmaJI	CCTAGG	1 cut(s)	48
XspI	CTAG	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.