Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

22119723 .. 22120046

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00183080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGTAGAGTATGAAGCGCTCATTGCGGGCCTACTCCTCGCCGTCGACTCGGGGGATGACGGTGTCAACATATTCGGCGACCCCCGGTTAGTCGTCAACCGGGTCAACGAAAGTTTCCGGGCCAAAGACCAACGGTTAGCGGTATACTTGGAGTACGTCAAGACACTCCTAAAAAAATTCAAATTTCACACCATCACTCGGATCCCCGAGAGAAAGAACGCCAAGGTTGATTCTGCGGCACAACTAGCAACCGCCCGGCCACATCGAGTCCGGCGGACACAAGGGTGGAATGTCTTGAAAGGCCAAGCATCACAAAAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

107

Amino Acids

12.1

Weight (kDa)

10.13

Isoelectric Point (pI)

20.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	1 - 82	4.8e-09	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	45, 144
AciI	CCGC	5 cut(s)	26, 140, 236, 252, 274
AclWI	GGATC	2 cut(s)	196, 209
AcoI	YGGCCR	1 cut(s)	257
AcsI	RAATTY	2 cut(s)	176, 182
AfaI	GTAC	1 cut(s)	155
AfeI	AGCGCT	1 cut(s)	18
AfiI	CCNNNNNNNGG	1 cut(s)	198
AgsI	TTSAA	2 cut(s)	181, 298
AleI	CACNNNNGTG	1 cut(s)	283
AlwI	GGATC	2 cut(s)	196, 209
Ama87I	CYCGRG	2 cut(s)	49, 206
Aor51HI	AGCGCT	1 cut(s)	18
AoxI	GGCC	4 cut(s)	28, 120, 257, 301
ApoI	RAATTY	2 cut(s)	176, 182
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	2 cut(s)	28, 120
AsuC2I	CCSGG	4 cut(s)	85, 101, 119, 256
AvaI	CYCGRG	2 cut(s)	49, 206
BamHI	GGATCC	1 cut(s)	201
BccI	CCATC	1 cut(s)	200
BceAI	ACGGC	1 cut(s)	26
BcnI	CCSGG	4 cut(s)	85, 101, 119, 256
BfaI	CTAG	2 cut(s)	245, 322
BfoI	RGCGCY	1 cut(s)	20
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
Bme1390I	CCNGG	4 cut(s)	85, 101, 119, 256
BmeT110I	CYCGRG	2 cut(s)	49, 206
BmgT120I	GGNCC	2 cut(s)	28, 120
BmiI	GGNNCC	1 cut(s)	203
BmrFI	CCNGG	4 cut(s)	85, 101, 119, 256
BmsI	GCATC	1 cut(s)	317
BpuMI	CCSGG	4 cut(s)	85, 101, 119, 256
BsaJI	CCNNGG	2 cut(s)	83, 222
Bsc4I	CCNNNNNNNGG	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	21
BseDI	CCNNGG	2 cut(s)	83, 222
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	1 cut(s)	198
BseMI	GCAATG	1 cut(s)	21
BseRI	GAGGAG	1 cut(s)	26
BshFI	GGCC	4 cut(s)	30, 122, 259, 303
BsiHKCI	CYCGRG	2 cut(s)	49, 206
BsiSI	CCGG	5 cut(s)	85, 100, 118, 256, 271
BslI	CCNNNNNNNGG	1 cut(s)	198
BsnI	GGCC	4 cut(s)	30, 122, 259, 303
BsoBI	CYCGRG	2 cut(s)	49, 206
Bsp143I	GATC	1 cut(s)	201
BspACI	CCGC	5 cut(s)	26, 140, 236, 252, 274
BspANI	GGCC	4 cut(s)	30, 122, 259, 303
BspLI	GGNNCC	1 cut(s)	203
BspPI	GGATC	2 cut(s)	196, 209
BsrDI	GCAATG	1 cut(s)	21
BssECI	CCNNGG	2 cut(s)	83, 222
BssMI	GATC	1 cut(s)	201
BssNAI	GTATAC	1 cut(s)	145
BssT1I	CCWWGG	1 cut(s)	222
Bst1107I	GTATAC	1 cut(s)	145
Bst4CI	ACNGT	2 cut(s)	62, 135
BstC8I	GCNNGC	1 cut(s)	28
BstF5I	GGATG	1 cut(s)	61
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	1 cut(s)	204
BstMBI	GATC	1 cut(s)	201
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 245
BstSCI	CCNGG	4 cut(s)	83, 99, 117, 254
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BstZ17I	GTATAC	1 cut(s)	145
BsuRI	GGCC	4 cut(s)	30, 122, 259, 303
BtsCI	GGATG	1 cut(s)	61
Cac8I	GCNNGC	1 cut(s)	28
CfoI	GCGC	1 cut(s)	19
Cfr13I	GGNCC	2 cut(s)	28, 120
Csp6I	GTAC	1 cut(s)	154
CviJI	RGCY	4 cut(s)	30, 122, 259, 303
CviKI_1	RGCY	4 cut(s)	30, 122, 259, 303
CviQI	GTAC	1 cut(s)	154
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
EaeI	YGGCCR	1 cut(s)	257
EciI	GGCGGA	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	222
Eco47III	AGCGCT	1 cut(s)	18
Eco88I	CYCGRG	2 cut(s)	49, 206
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
FaiI	YATR	3 cut(s)	12, 71, 145
FauI	CCCGC	1 cut(s)	19
FblI	GTMKAC	2 cut(s)	45, 144
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	2 cut(s)	245, 322
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	1 cut(s)	237
HaeII	RGCGCY	1 cut(s)	20
HaeIII	GGCC	4 cut(s)	30, 122, 259, 303
HapII	CCGG	5 cut(s)	85, 100, 118, 256, 271
HhaI	GCGC	1 cut(s)	19
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HincII	GTYRAC	4 cut(s)	46, 67, 97, 106
HindII	GTYRAC	4 cut(s)	46, 67, 97, 106
HinfI	GANTC	3 cut(s)	47, 230, 267
HpaII	CCGG	5 cut(s)	85, 100, 118, 256, 271
Hpy166II	GTNNAC	5 cut(s)	46, 67, 97, 106, 145
Hpy188I	TCNGA	1 cut(s)	201
Hpy188III	TCNNGA	2 cut(s)	160, 295
Hpy8I	GTNNAC	5 cut(s)	46, 67, 97, 106, 145
Hpy99I	CGWCG	1 cut(s)	47
HpyCH4III	ACNGT	2 cut(s)	62, 135
HpyCH4IV	ACGT	1 cut(s)	156
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 245
HpySE526I	ACGT	1 cut(s)	156
HspAI	GCGC	1 cut(s)	17
Kzo9I	GATC	1 cut(s)	201
LpnPI	CCDG	5 cut(s)	98, 113, 131, 269, 284
LweI	GCATC	1 cut(s)	317
MaeI	CTAG	2 cut(s)	245, 322
MaeII	ACGT	1 cut(s)	156
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MflI	RGATCY	1 cut(s)	201
MluCI	AATT	2 cut(s)	176, 182
MlyI	GAGTC	2 cut(s)	41, 276
MnlI	CCTC	1 cut(s)	47
MslI	CAYNNNNRTG	1 cut(s)	283
MspI	CCGG	5 cut(s)	85, 100, 118, 256, 271
MspR9I	CCNGG	4 cut(s)	85, 101, 119, 256
MwoI	GCNNNNNNNGC	2 cut(s)	23, 245
NciI	CCSGG	4 cut(s)	85, 101, 119, 256
NdeII	GATC	1 cut(s)	201
NlaIV	GGNNCC	1 cut(s)	203
OliI	CACNNNNGTG	1 cut(s)	283
PfeI	GAWTC	1 cut(s)	230
PflFI	GACNNNGTC	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	238
PleI	GAGTC	2 cut(s)	41, 275
PpsI	GAGTC	2 cut(s)	41, 275
PspN4I	GGNNCC	1 cut(s)	203
PspPI	GGNCC	2 cut(s)	28, 120
PsuI	RGATCY	1 cut(s)	201
PsyI	GACNNNGTC	1 cut(s)	62
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
RseI	CAYNNNNRTG	1 cut(s)	283
SalI	GTCGAC	1 cut(s)	44
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	201
Sau96I	GGNCC	2 cut(s)	28, 120
SchI	GAGTC	2 cut(s)	41, 276
ScrFI	CCNGG	4 cut(s)	85, 101, 119, 256
SetI	ASST	2 cut(s)	159, 228
SfaNI	GCATC	1 cut(s)	317
SmiMI	CAYNNNNRTG	1 cut(s)	283
Sse9I	AATT	2 cut(s)	176, 182
SsiI	CCGC	5 cut(s)	26, 140, 236, 252, 274
SspMI	CTAG	2 cut(s)	245, 322
StyD4I	CCNGG	4 cut(s)	83, 99, 117, 254
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	2 cut(s)	62, 135
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	2 cut(s)	45, 265
TasI	AATT	2 cut(s)	176, 182
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	230
TspDTI	ATGAA	1 cut(s)	27
Tth111I	GACNNNGTC	1 cut(s)	62
XapI	RAATTY	2 cut(s)	176, 182
XmiI	GTMKAC	2 cut(s)	45, 144
XspI	CTAG	2 cut(s)	245, 322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.