Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

57583224 .. 57584975

Gene Structure 1752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G030810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1752 bp

ATGCAGAACCCTGAACACTCAGGGCGACTCAGTAAGTGGGCAATTGAGCTCAGCGAATTTGACATCGAGTACAAGCCAAGAACCGCCATGAAGGGCCAGGCAGTAGCAGACTTCATCGCTGAACTTACTGAGCGTCAGCCAGAACCCGATACTCAAGCACAGCCCGGAACAGAAATGGTAACCAGTACAGGGGTACTTACCCCACAGTCGGATTGGGACCTACATGTGGACGGCTCCGCCTGCGCCAAGGCCAGCGGCGCCGGAGTCATCTTAACCGGACCCGGGGGACTGAACGCAGAATATGCGTTGAAATTCAACTTCAAAGCTTCAAACAATATGGCGGAGTACGAGGCGCTCATCGCCGGCCTACTCCTCGCCATTGACTCAGGTGCTGACAGCGTCAACATATTCAGCGACTCCCAACTAGTCGTCAACCAGGTCAACGACAGCTTCCAAGCCAAGGACCAGCAGCTAGCGGCGTATCTGGGGTACGTCAAAACGTTGCTAAAAAAGTTCAAGTTTCACACAATCACACAAATCCCCAGGGAAAAGAACGCTAAGGCTGATTCCCTGGCGAGACTGGCAACCGCCCAACCACATCAGAGTCCGGCGGACACAAGGGTGGAGTATCTTGACAAACCAAGTATCACAAAGACTCTGGCGGAAATCTTCAACATTCAGGTCAACCCCAGCTGGATGGACGAGATCATCATGTATAAGCGCAACGGAACGTTGCCAGAAGATAAGATCCAGGCAAGACAGCTCCAACGAAGAGCAACCCGCTACAACATCCAGCACGGCAAACTCTACCGCCAGGGATTCACCCATCCAAACCTCCGCTGTCTAACCCCAGAGGAGGGAAGGGTTGTCCTAACTGAAATCCATAGCGGAGAATGCGGAAACCACTCGGGCGCCAGATCCCTGGCCAACCGCACAATGCGACAAGGGTACTTCTGGCCCACACTTGGCGATGACGCCCGGCGGATTTCGAGGTCTTGCCACAAATGCCAGCAATTCGCAGATCTCCCACACGCACCAGCAGAGCCACTGTCAATCATCGTGGGCCCATGGATTCATTCTACGTGGGGCCTTGATCTGATGGGCAAATTCCAAACTGCCAAGGGTCAGTTCAAATACATCATTGTTGCCATCGATTACAACAGCAAGTGGATAGAGGCAGAGCCACTGACGGCAATAACTACCGCCAAGGTAATTCACTTCCTTTGGAAGAATATCTATTGCCGCTACGGTGTCCCACACACAATCATCACAGATAACGGCACACAGTTCAACAATGACGAGCTCATCTCCTTCACCATCAACTTGGGCACCAAGCTGAGGTTTGCATCTGTCGCCCACCCCCAGACCAACGGCCAGGTCGAAGCGGCGAACAAGATAATAAAAAAGTTGTTAAAAAAGAAGCTCGACGACGCCAAGGGTTTATGGGCGGAAAAGCTCCCAGAGGTCCTGTGGGCCATCCGAACAACTCCAACTTCCGCCACAGGAGAAACCCCTTTTTGCATGATGTTCGGCACAGAGGCTGTCTTACCCATTGAAGTCACTCAACCTACCGCTAGAGTCGAAGGCTACGGGCCAGAACCAACAGCGCCGGCGTCAACTTGGACAGGGACCTCCTCGAAGAGAAAAGGCTCGAGGCCCATTTGCACAATCTACAAAACAAGCAGCGGGTATCACGTTTTTACAACGCCAGAGTCAAGGCCCGGAACCTCCAACTGGGGGACTTGGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

583

Amino Acids

64.76

Weight (kDa)

8.68

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_H	PF00075	74 - 153	2e-06	RNase H
RVT_3	PF13456	82 - 194	1.7e-19	Reverse transcriptase-like
Integrase_H2C2	PF17921	288 - 339	2.5e-08	Integrase zinc binding domain
rve	PF00665	361 - 454	5.3e-12	Integrase core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	257, 911, 1328
AclI	AACGTT	2 cut(s)	500, 731
AclWI	GGATC	2 cut(s)	742, 912
AcoI	YGGCCR	2 cut(s)	924, 1372
AcsI	RAATTY	3 cut(s)	56, 311, 1106
AcyI	GRCGYC	5 cut(s)	258, 912, 975, 1431, 1613
AfaI	GTAC	6 cut(s)	71, 187, 195, 347, 491, 950
AflIII	ACRYGT	1 cut(s)	223
AgsI	TTSAA	9 cut(s)	310, 316, 322, 330, 517, 673, 1132, 1291, 1556
AhlI	ACTAGT	1 cut(s)	424
AjnI	CCWGG	8 cut(s)	96, 435, 542, 570, 750, 813, 921, 1374
AjuI	GAANNNNNNNTTGG	2 cut(s)	1112, 1144
AleI	CACNNNNGTG	1 cut(s)	620
Alw21I	GWGCWC	2 cut(s)	51, 1305
Alw26I	GTCTC	1 cut(s)	571
AlwI	GGATC	2 cut(s)	742, 912
AlwNI	CAGNNNCTG	2 cut(s)	392, 1541
Ama87I	CYCGRG	3 cut(s)	281, 907, 1651
ApaI	GGGCCC	1 cut(s)	1067
ApeKI	GCWGC	2 cut(s)	469, 1683
ApoI	RAATTY	3 cut(s)	56, 311, 1106
AspLEI	GCGC	6 cut(s)	245, 260, 355, 723, 914, 1609
AsuC2I	CCSGG	5 cut(s)	165, 282, 283, 979, 1722
AsuHPI	GGTGA	2 cut(s)	814, 1306
AsuNHI	GCTAGC	1 cut(s)	472
AvaI	CYCGRG	3 cut(s)	281, 907, 1651
AvaII	GGWCC	5 cut(s)	217, 278, 463, 1465, 1629
BaeGI	GKGCMC	2 cut(s)	1067, 1331
BalI	TGGCCA	1 cut(s)	926
BanI	GGYRCC	3 cut(s)	257, 911, 1328
BanII	GRGCYC	3 cut(s)	51, 1067, 1305
Bbv12I	GWGCWC	2 cut(s)	51, 1305
BbvCI	CCTCAGC	1 cut(s)	1337
BbvI	GCAGC	2 cut(s)	481, 1695
BccI	CCATC	6 cut(s)	691, 834, 1093, 1157, 1325, 1484
BceAI	ACGGC	5 cut(s)	247, 814, 1206, 1294, 1387
BcgI	CGANNNNNNTGC	2 cut(s)	1510, 1544
BciT130I	CCWGG	8 cut(s)	98, 437, 544, 572, 752, 815, 923, 1376
BcnI	CCSGG	5 cut(s)	165, 282, 283, 979, 1722
BcoDI	GTCTC	1 cut(s)	571
BcuI	ACTAGT	1 cut(s)	424
BfaI	CTAG	3 cut(s)	425, 473, 1575
BfoI	RGCGCY	4 cut(s)	261, 356, 915, 1610
BglII	AGATCT	1 cut(s)	1021
BisI	GCNGC	6 cut(s)	256, 470, 477, 1243, 1386, 1684
BlpI	GCTNAGC	1 cut(s)	50
BlsI	GCNGC	6 cut(s)	257, 471, 478, 1244, 1387, 1685
Bme18I	GGWCC	5 cut(s)	217, 278, 463, 1465, 1629
BmeT110I	CYCGRG	3 cut(s)	281, 907, 1651
BmrI	ACTGGG	1 cut(s)	1744
BmsI	GCATC	1 cut(s)	1355
BmtI	GCTAGC	1 cut(s)	476
BmuI	ACTGGG	1 cut(s)	1744
BplI	GAGNNNNNCTC	2 cut(s)	1292, 1324
Bpu10I	CCTNAGC	2 cut(s)	558, 1337
Bpu1102I	GCTNAGC	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	138
BpuMI	CCSGG	5 cut(s)	165, 282, 283, 979, 1722
Bsa29I	ATCGAT	1 cut(s)	1152
BsaAI	YACGTR	1 cut(s)	1083
BsaHI	GRCGYC	5 cut(s)	258, 912, 975, 1431, 1613
BsaWI	WCCGGW	1 cut(s)	275
Bse118I	RCCGGY	2 cut(s)	362, 1609
Bse1I	ACTGG	3 cut(s)	183, 585, 1739
BseBI	CCWGG	8 cut(s)	98, 437, 544, 572, 752, 815, 923, 1376
BseCI	ATCGAT	1 cut(s)	1152
BseGI	GGATG	4 cut(s)	702, 789, 826, 1476
BseMII	CTCAG	6 cut(s)	33, 43, 64, 120, 399, 1328
BseNI	ACTGG	3 cut(s)	183, 585, 1739
BseRI	GAGGAG	3 cut(s)	362, 869, 1624
BseSI	GKGCMC	2 cut(s)	1067, 1331
BseXI	GCAGC	2 cut(s)	481, 1695
BseYI	CCCAGC	1 cut(s)	689
BshNI	GGYRCC	3 cut(s)	257, 911, 1328
BshVI	ATCGAT	1 cut(s)	1152
BsiHKAI	GWGCWC	2 cut(s)	51, 1305
BsiHKCI	CYCGRG	3 cut(s)	281, 907, 1651
BsiSI	CCGG	9 cut(s)	165, 261, 276, 282, 363, 608, 979, 1610, 1722
BslFI	GGGAC	4 cut(s)	230, 300, 1238, 1642
BsmAI	GTCTC	1 cut(s)	571
BsmFI	GGGAC	4 cut(s)	230, 300, 1238, 1642
BsmI	GAATGC	1 cut(s)	899
BsoBI	CYCGRG	3 cut(s)	281, 907, 1651
Bsp120I	GGGCCC	1 cut(s)	1063
Bsp1286I	GDGCHC	4 cut(s)	51, 1067, 1305, 1331
Bsp143I	GATC	5 cut(s)	705, 747, 917, 1021, 1093
Bsp1720I	GCTNAGC	1 cut(s)	50
Bsp19I	CCATGG	1 cut(s)	1067
BspCNI	CTCAG	6 cut(s)	32, 42, 63, 121, 398, 1329
BspDI	ATCGAT	1 cut(s)	1152
BspHI	TCATGA	1 cut(s)	1748
BspOI	GCTAGC	1 cut(s)	476
BspPI	GGATC	2 cut(s)	742, 912
BspQI	GCTCTTC	1 cut(s)	766
BspT107I	GGYRCC	3 cut(s)	257, 911, 1328
BsrFI	RCCGGY	2 cut(s)	362, 1609
BsrI	ACTGG	3 cut(s)	183, 585, 1739
BssAI	RCCGGY	2 cut(s)	362, 1609
BssMI	GATC	5 cut(s)	705, 747, 917, 1021, 1093
BssNI	GRCGYC	5 cut(s)	258, 912, 975, 1431, 1613
BssT1I	CCWWGG	6 cut(s)	246, 459, 1067, 1119, 1206, 1434
Bst2UI	CCWGG	8 cut(s)	98, 437, 544, 572, 752, 815, 923, 1376
Bst4CI	ACNGT	4 cut(s)	207, 1050, 1250, 1287
Bst6I	CTCTTC	2 cut(s)	766, 1634
BstACI	GRCGYC	5 cut(s)	258, 912, 975, 1431, 1613
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstBAI	YACGTR	1 cut(s)	1083
BstC8I	GCNNGC	6 cut(s)	241, 253, 364, 474, 1010, 1611
BstDEI	CTNAG	7 cut(s)	19, 29, 50, 129, 385, 558, 1337
BstDSI	CCRYGG	1 cut(s)	1067
BstEII	GGTNACC	1 cut(s)	178
BstF5I	GGATG	4 cut(s)	702, 789, 826, 1476
BstH2I	RGCGCY	4 cut(s)	261, 356, 915, 1610
BstHHI	GCGC	6 cut(s)	245, 260, 355, 723, 914, 1609
BstKTI	GATC	5 cut(s)	708, 750, 920, 1024, 1096
BstMAI	GTCTC	1 cut(s)	571
BstMBI	GATC	5 cut(s)	705, 747, 917, 1021, 1093
BstMWI	GCNNNNNNNGC	8 cut(s)	240, 257, 302, 359, 581, 894, 1005, 1352
BstNI	CCWGG	8 cut(s)	98, 437, 544, 572, 752, 815, 923, 1376
BstNSI	RCATGY	1 cut(s)	227
BstPI	GGTNACC	1 cut(s)	178
BstSLI	GKGCMC	2 cut(s)	1067, 1331
BstV1I	GCAGC	2 cut(s)	481, 1695
BstX2I	RGATCY	3 cut(s)	747, 917, 1021
BstXI	CCANNNNNNTGG	3 cut(s)	697, 922, 1324
BstYI	RGATCY	3 cut(s)	747, 917, 1021
Bsu15I	ATCGAT	1 cut(s)	1152
BsuTUI	ATCGAT	1 cut(s)	1152
BtgI	CCRYGG	1 cut(s)	1067
BtgZI	GCGATG	3 cut(s)	100, 343, 984
BtsCI	GGATG	4 cut(s)	702, 789, 826, 1476
BtsIMutI	CAGTG	2 cut(s)	1046, 1184
Cac8I	GCNNGC	6 cut(s)	241, 253, 364, 474, 1010, 1611
CaiI	CAGNNNCTG	2 cut(s)	392, 1541
CciI	TCATGA	1 cut(s)	1748
CfoI	GCGC	6 cut(s)	245, 260, 355, 723, 914, 1609
Cfr10I	RCCGGY	2 cut(s)	362, 1609
Cfr9I	CCCGGG	1 cut(s)	281
ClaI	ATCGAT	1 cut(s)	1152
CseI	GACGC	5 cut(s)	122, 388, 983, 1439, 1602
CsiI	ACCWGGT	1 cut(s)	435
Csp6I	GTAC	6 cut(s)	70, 186, 194, 346, 490, 949
CspCI	CAANNNNNGTGG	2 cut(s)	1041, 1076
CviAII	CATG	6 cut(s)	88, 224, 712, 1068, 1522, 1749
CviQI	GTAC	6 cut(s)	70, 186, 194, 346, 490, 949
DdeI	CTNAG	7 cut(s)	19, 29, 50, 129, 385, 558, 1337
DinI	GGCGCC	2 cut(s)	259, 913
DpnI	GATC	5 cut(s)	707, 749, 919, 1023, 1095
DpnII	GATC	5 cut(s)	705, 747, 917, 1021, 1093
EaeI	YGGCCR	2 cut(s)	924, 1372
Eam1104I	CTCTTC	2 cut(s)	766, 1634
EarI	CTCTTC	2 cut(s)	766, 1634
EciI	GGCGGA	7 cut(s)	226, 356, 626, 677, 997, 1463, 1486
Ecl136II	GAGCTC	2 cut(s)	49, 1303
Eco130I	CCWWGG	6 cut(s)	246, 459, 1067, 1119, 1206, 1434
Eco24I	GRGCYC	3 cut(s)	51, 1067, 1305
Eco47I	GGWCC	5 cut(s)	217, 278, 463, 1465, 1629
Eco53kI	GAGCTC	2 cut(s)	49, 1303
Eco88I	CYCGRG	3 cut(s)	281, 907, 1651
Eco91I	GGTNACC	1 cut(s)	178
EcoICRI	GAGCTC	2 cut(s)	49, 1303
EcoO109I	RGGNCCY	4 cut(s)	217, 1087, 1465, 1629
EcoO65I	GGTNACC	1 cut(s)	178
EcoRII	CCWGG	8 cut(s)	96, 435, 542, 570, 750, 813, 921, 1374
EcoT14I	CCWWGG	6 cut(s)	246, 459, 1067, 1119, 1206, 1434
EcoT38I	GRGCYC	3 cut(s)	51, 1067, 1305
EgeI	GGCGCC	2 cut(s)	259, 913
EheI	GGCGCC	2 cut(s)	259, 913
ErhI	CCWWGG	6 cut(s)	246, 459, 1067, 1119, 1206, 1434
FaeI	CATG	6 cut(s)	91, 227, 715, 1071, 1525, 1752
FaqI	GGGAC	4 cut(s)	230, 300, 1238, 1642
FatI	CATG	6 cut(s)	87, 223, 711, 1067, 1521, 1748
FauI	CCCGC	2 cut(s)	788, 1679
Fnu4HI	GCNGC	6 cut(s)	256, 470, 477, 1243, 1386, 1684
FokI	GGATG	4 cut(s)	709, 776, 813, 1463
FriOI	GRGCYC	3 cut(s)	51, 1067, 1305
Fsp4HI	GCNGC	6 cut(s)	256, 470, 477, 1243, 1386, 1684
FspBI	CTAG	3 cut(s)	425, 473, 1575
GlaI	GCGC	6 cut(s)	244, 259, 354, 722, 913, 1608
GluI	GCNGC	6 cut(s)	256, 470, 477, 1243, 1386, 1684
GsaI	CCCAGC	1 cut(s)	693
HaeII	RGCGCY	4 cut(s)	261, 356, 915, 1610
HapII	CCGG	9 cut(s)	165, 261, 276, 282, 363, 608, 979, 1610, 1722
HgaI	GACGC	5 cut(s)	122, 388, 983, 1439, 1602
HhaI	GCGC	6 cut(s)	245, 260, 355, 723, 914, 1609
Hin1I	GRCGYC	5 cut(s)	258, 912, 975, 1431, 1613
Hin1II	CATG	6 cut(s)	91, 227, 715, 1071, 1525, 1752
Hin6I	GCGC	6 cut(s)	243, 258, 353, 721, 912, 1607
HinP1I	GCGC	6 cut(s)	243, 258, 353, 721, 912, 1607
HincII	GTYRAC	5 cut(s)	403, 433, 442, 685, 1617
HindII	GTYRAC	5 cut(s)	403, 433, 442, 685, 1617
HindIII	AAGCTT	1 cut(s)	324
HpaII	CCGG	9 cut(s)	165, 261, 276, 282, 363, 608, 979, 1610, 1722
HphI	GGTGA	2 cut(s)	814, 1306
Hpy166II	GTNNAC	6 cut(s)	229, 403, 433, 442, 685, 1617
Hpy188I	TCNGA	4 cut(s)	211, 603, 1098, 1481
Hpy188III	TCNNGA	2 cut(s)	632, 1749
Hpy8I	GTNNAC	6 cut(s)	229, 403, 433, 442, 685, 1617
Hpy99I	CGWCG	2 cut(s)	1430, 1433
HpyAV	CCTTC	4 cut(s)	85, 855, 1321, 1577
HpyCH4III	ACNGT	4 cut(s)	207, 1050, 1250, 1287
HpyCH4IV	ACGT	5 cut(s)	492, 500, 731, 1082, 1695
HpyCH4V	TGCA	4 cut(s)	4, 1346, 1521, 1665
HpyF10VI	GCNNNNNNNGC	8 cut(s)	240, 257, 302, 359, 581, 894, 1005, 1352
HpyF3I	CTNAG	7 cut(s)	19, 29, 50, 129, 385, 558, 1337
HpySE526I	ACGT	5 cut(s)	492, 500, 731, 1082, 1695
Hsp92I	GRCGYC	5 cut(s)	258, 912, 975, 1431, 1613
Hsp92II	CATG	6 cut(s)	91, 227, 715, 1071, 1525, 1752
HspAI	GCGC	6 cut(s)	243, 258, 353, 721, 912, 1607
KasI	GGCGCC	2 cut(s)	257, 911
KroI	GCCGGC	2 cut(s)	362, 1609
KroNI	GCCGGC	2 cut(s)	364, 1611
Kzo9I	GATC	5 cut(s)	705, 747, 917, 1021, 1093
LguI	GCTCTTC	1 cut(s)	766
LmnI	GCTCC	3 cut(s)	239, 768, 1461
Lsp1109I	GCAGC	2 cut(s)	481, 1695
LweI	GCATC	1 cut(s)	1355
MabI	ACCWGGT	1 cut(s)	435
MaeI	CTAG	3 cut(s)	425, 473, 1575
MaeII	ACGT	5 cut(s)	492, 500, 731, 1082, 1695
MaeIII	GTNAC	2 cut(s)	178, 1558
MalI	GATC	5 cut(s)	707, 749, 919, 1023, 1095
MboI	GATC	5 cut(s)	705, 747, 917, 1021, 1093
MboII	GAAGA	5 cut(s)	661, 752, 783, 1240, 1651
MfeI	CAATTG	1 cut(s)	42
MflI	RGATCY	3 cut(s)	747, 917, 1021
MhlI	GDGCHC	4 cut(s)	51, 1067, 1305, 1331
MlsI	TGGCCA	1 cut(s)	926
MluCI	AATT	6 cut(s)	42, 56, 311, 1013, 1106, 1212
MluNI	TGGCCA	1 cut(s)	926
Mly113I	GGCGCC	2 cut(s)	258, 912
MlyI	GAGTC	8 cut(s)	21, 273, 377, 410, 613, 649, 1587, 1721
MmeI	TCCRAC	3 cut(s)	189, 790, 1514
Mox20I	TGGCCA	1 cut(s)	926
MreI	CGCCGGCG	1 cut(s)	1609
MroNI	GCCGGC	2 cut(s)	362, 1609
MscI	TGGCCA	1 cut(s)	926
MseI	TTAA	2 cut(s)	272, 1412
MslI	CAYNNNNRTG	1 cut(s)	620
Msp20I	TGGCCA	1 cut(s)	926
MspA1I	CMGCKG	4 cut(s)	255, 693, 840, 1686
MspI	CCGG	9 cut(s)	165, 261, 276, 282, 363, 608, 979, 1610, 1722
MunI	CAATTG	1 cut(s)	42
Mva1269I	GAATGC	1 cut(s)	899
MvaI	CCWGG	8 cut(s)	98, 437, 544, 572, 752, 815, 923, 1376
MwoI	GCNNNNNNNGC	8 cut(s)	240, 257, 302, 359, 581, 894, 1005, 1352
NaeI	GCCGGC	2 cut(s)	364, 1611
NarI	GGCGCC	2 cut(s)	258, 912
NciI	CCSGG	5 cut(s)	165, 282, 283, 979, 1722
NcoI	CCATGG	1 cut(s)	1067
NdeII	GATC	5 cut(s)	705, 747, 917, 1021, 1093
NgoMIV	GCCGGC	2 cut(s)	362, 1609
NheI	GCTAGC	1 cut(s)	472
NlaIII	CATG	6 cut(s)	91, 227, 715, 1071, 1525, 1752
NmuCI	GTSAC	1 cut(s)	1558
NspI	RCATGY	1 cut(s)	227
OliI	CACNNNNGTG	1 cut(s)	620
PaeR7I	CTCGAG	1 cut(s)	1651
PagI	TCATGA	1 cut(s)	1748
PasI	CCCWGGG	1 cut(s)	543
PciI	ACATGT	1 cut(s)	223
PciSI	GCTCTTC	1 cut(s)	766
PcsI	WCGNNNNNNNCGW	1 cut(s)	1377
PctI	GAATGC	1 cut(s)	899
PdiI	GCCGGC	2 cut(s)	364, 1611
PfeI	GAWTC	3 cut(s)	566, 819, 1072
PflFI	GACNNNGTC	2 cut(s)	398, 1744
PkrI	GCNGC	6 cut(s)	257, 471, 478, 1244, 1387, 1685
PleI	GAGTC	8 cut(s)	21, 272, 377, 410, 612, 649, 1586, 1720
PluTI	GGCGCC	2 cut(s)	261, 915
PpsI	GAGTC	8 cut(s)	21, 272, 377, 410, 612, 649, 1586, 1720
Ppu21I	YACGTR	1 cut(s)	1083
PpuMI	RGGWCCY	3 cut(s)	217, 1465, 1629
PscI	ACATGT	1 cut(s)	223
Psp124BI	GAGCTC	2 cut(s)	51, 1305
Psp1406I	AACGTT	2 cut(s)	500, 731
Psp5II	RGGWCCY	3 cut(s)	217, 1465, 1629
Psp6I	CCWGG	8 cut(s)	96, 435, 542, 570, 750, 813, 921, 1374
PspEI	GGTNACC	1 cut(s)	178
PspFI	CCCAGC	1 cut(s)	689
PspGI	CCWGG	8 cut(s)	96, 435, 542, 570, 750, 813, 921, 1374
PspOMI	GGGCCC	1 cut(s)	1063
PspPPI	RGGWCCY	3 cut(s)	217, 1465, 1629
PspXI	VCTCGAGB	1 cut(s)	1651
PstNI	CAGNNNCTG	2 cut(s)	392, 1541
PsuI	RGATCY	3 cut(s)	747, 917, 1021
PsyI	GACNNNGTC	2 cut(s)	398, 1744
PvuII	CAGCTG	1 cut(s)	693
RsaI	GTAC	6 cut(s)	71, 187, 195, 347, 491, 950
RsaNI	GTAC	6 cut(s)	70, 186, 194, 346, 490, 949
RseI	CAYNNNNRTG	1 cut(s)	620
SacI	GAGCTC	2 cut(s)	51, 1305
SapI	GCTCTTC	1 cut(s)	766
SaqAI	TTAA	2 cut(s)	272, 1412
SatI	GCNGC	6 cut(s)	256, 470, 477, 1243, 1386, 1684
Sau3AI	GATC	5 cut(s)	705, 747, 917, 1021, 1093
SchI	GAGTC	8 cut(s)	21, 273, 377, 410, 613, 649, 1587, 1721
SduI	GDGCHC	4 cut(s)	51, 1067, 1305, 1331
SexAI	ACCWGGT	1 cut(s)	435
SfaNI	GCATC	1 cut(s)	1355
SfoI	GGCGCC	2 cut(s)	259, 913
Sfr274I	CTCGAG	1 cut(s)	1651
SgrAI	CRCCGGYG	1 cut(s)	1609
SinI	GGWCC	5 cut(s)	217, 278, 463, 1465, 1629
SlaI	CTCGAG	1 cut(s)	1651
SmaI	CCCGGG	1 cut(s)	283
SmiMI	CAYNNNNRTG	1 cut(s)	620
SmlI	CTYRAG	2 cut(s)	153, 1651
SmoI	CTYRAG	2 cut(s)	153, 1651
SpeI	ACTAGT	1 cut(s)	424
Sse9I	AATT	6 cut(s)	42, 56, 311, 1013, 1106, 1212
SspDI	GGCGCC	2 cut(s)	257, 911
SspMI	CTAG	3 cut(s)	425, 473, 1575
SstI	GAGCTC	2 cut(s)	51, 1305
StyI	CCWWGG	6 cut(s)	246, 459, 1067, 1119, 1206, 1434
TaaI	ACNGT	4 cut(s)	207, 1050, 1250, 1287
TaiI	ACGT	5 cut(s)	495, 503, 734, 1085, 1698
TaqI	TCGA	8 cut(s)	66, 989, 1152, 1380, 1425, 1581, 1637, 1652
TasI	AATT	6 cut(s)	42, 56, 311, 1013, 1106, 1212
TatI	WGTACW	2 cut(s)	69, 185
TauI	GCSGC	4 cut(s)	258, 479, 1245, 1388
TfiI	GAWTC	3 cut(s)	566, 819, 1072
Tru1I	TTAA	2 cut(s)	272, 1412
Tru9I	TTAA	2 cut(s)	272, 1412
TscAI	CASTG	2 cut(s)	1053, 1191
TseFI	GTSAC	1 cut(s)	1558
TseI	GCWGC	2 cut(s)	469, 1683
Tsp45I	GTSAC	1 cut(s)	1558
TspDTI	ATGAA	3 cut(s)	103, 104, 1064
TspGWI	ACGGA	1 cut(s)	741
TspMI	CCCGGG	1 cut(s)	281
TspRI	CASTG	2 cut(s)	1053, 1191
Tth111I	GACNNNGTC	2 cut(s)	398, 1744
VpaK11BI	GGWCC	5 cut(s)	217, 278, 463, 1465, 1629
XapI	RAATTY	3 cut(s)	56, 311, 1106
XceI	RCATGY	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	2 cut(s)	210, 1467
XhoI	CTCGAG	1 cut(s)	1651
XmaI	CCCGGG	1 cut(s)	281
XspI	CTAG	3 cut(s)	425, 473, 1575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.