Rh4CG090200

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000250
Physical Location & Seq
Forward (+)
16240971 .. 16256444
15474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG090200.1

Sequence Viewer

Length: 678 bp
ATGAAAGCGCCAATCCCTGGTGTCCATCTTAAGCTGTACCTAGCTGCAACTGACACTGCAGTGGGGGCTTTACTTGCCCAAGATGATGAAAATGGAGAAGAATGCGCCGTGTACTATGTGAGTTGCTTGTTAGGAGAAGCTGAAGCACGCTATCCCAAGGTTGATAGGAACTGCCTCGCACTTATCTATGCAGCACAAAGATTGCGCCACTATTTCTTGGCGCACAAGCTCCATCTTATGGTAAAGACTGATCCAGTAAGGTACCTGCTCACAAAACCAATCTTATCTGGCCGGCTGGCTAGGTGGTTGCTCCAACTAGCAGAGTTTGATATTGAGTGCATAATGCCCCGCGCCATTAAGGGACAAGCAGTAGTCGACATGCTTGCTTTATTCCCTGGAAGTGAAGAAATTCCACTAATGCAAGATATTCCTGGGGAATTACCAGAAATGTGCCAATTTGAAGTGGACTTTGGCCGCGGGGTGTACTGGAATGGAGCAATTCATTGGCTAAACCACAAGGATGAGTTGCTCTACTGTCACATTGGTGATGGCTCGGATGAAAAGCCGCTCCGGAAGGCACCGCTGAGACCCAGAGATCTATACAAGTTGACTGGCTGGAGGCTTATAATCATATGGGTAGTTTGGCTTGCGTGTGAAGGTATTTCTATCCCATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

225

Amino Acids

25.54

Weight (kDa)

5.98

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RT_RNaseH_2 PF17919 3 - 78 6.3e-14 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 10 - 109 3.9e-22 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000250)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica Prupe.6G166700_v2.0.a1
pyrus_communis pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis RchiOBHm_Chr5g0018261
rosa_laevigata RLG00000022447
rosa_multiflora Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa Rorug02G0381000
rosa_samantha Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 626
Acc36I ACCTGC 1 cut(s) 273
Acc65I GGTACC 1 cut(s) 261
AccB1I GGYRCC 2 cut(s) 261, 577
AccB7I CCANNNNNTGG 2 cut(s) 17, 238
AccBSI CCGCTC 1 cut(s) 568
AccI GTMKAC 1 cut(s) 375
AccII CGCG 2 cut(s) 351, 477
AccIII TCCGGA 1 cut(s) 570
AciI CCGC 5 cut(s) 349, 475, 477, 566, 581
AclWI GGATC 1 cut(s) 245
AcoI YGGCCR 2 cut(s) 289, 472
AcsI RAATTY 1 cut(s) 408
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 4 cut(s) 38, 113, 263, 485
AfiI CCNNNNNNNGG 2 cut(s) 17, 238
AflII CTTAAG 1 cut(s) 29
AgsI TTSAA 1 cut(s) 461
AjnI CCWGG 3 cut(s) 16, 394, 430
AjuI GAANNNNNNNTTGG 2 cut(s) 453, 485
AleI CACNNNNGTG 2 cut(s) 59, 543
AluBI AGCT 4 cut(s) 34, 44, 140, 229
AluI AGCT 4 cut(s) 34, 44, 140, 229
Alw26I GTCTC 1 cut(s) 580
AlwI GGATC 1 cut(s) 245
Aor13HI TCCGGA 1 cut(s) 570
AoxI GGCC 2 cut(s) 289, 472
ApeKI GCWGC 2 cut(s) 44, 191
ApoI RAATTY 1 cut(s) 408
Asp700I GAANNNNTTC 1 cut(s) 408
Asp718I GGTACC 1 cut(s) 261
AspLEI GCGC 5 cut(s) 10, 107, 207, 223, 353
AsuHPI GGTGA 1 cut(s) 557
BanI GGYRCC 2 cut(s) 261, 577
BbvI GCAGC 2 cut(s) 31, 203
BccI CCATC 3 cut(s) 33, 240, 542
BceAI ACGGC 1 cut(s) 92
BcgI CGANNNNNNTGC 2 cut(s) 365, 399
BciT130I CCWGG 3 cut(s) 18, 396, 432
BcoDI GTCTC 1 cut(s) 580
BfaI CTAG 3 cut(s) 41, 300, 317
BfmI CTRYAG 1 cut(s) 57
BfoI RGCGCY 1 cut(s) 11
BfrI CTTAAG 1 cut(s) 29
BfuAI ACCTGC 1 cut(s) 273
BglII AGATCT 1 cut(s) 595
BisI GCNGC 4 cut(s) 45, 192, 475, 566
BlsI GCNGC 4 cut(s) 46, 193, 476, 567
Bme1390I CCNGG 3 cut(s) 18, 396, 432
BmiI GGNNCC 2 cut(s) 263, 579
BmrFI CCNGG 3 cut(s) 18, 396, 432
BpmI CTGGAG 1 cut(s) 637
BsaI GGTCTC 1 cut(s) 580
BsaJI CCNNGG 5 cut(s) 16, 156, 394, 431, 475
BsaWI WCCGGW 1 cut(s) 570
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 238
Bse118I RCCGGY 1 cut(s) 291
Bse1I ACTGG 3 cut(s) 254, 491, 616
BseAI TCCGGA 1 cut(s) 570
BseBI CCWGG 3 cut(s) 18, 396, 432
BseDI CCNNGG 5 cut(s) 16, 156, 394, 431, 475
BseGI GGATG 2 cut(s) 526, 562
BseLI CCNNNNNNNGG 2 cut(s) 17, 238
BseMII CTCAG 1 cut(s) 575
BseNI ACTGG 3 cut(s) 254, 491, 616
BseXI GCAGC 2 cut(s) 31, 203
Bsh1236I CGCG 2 cut(s) 351, 477
BshFI GGCC 2 cut(s) 291, 474
BshNI GGYRCC 2 cut(s) 261, 577
BsiSI CCGG 2 cut(s) 292, 571
BslFI GGGAC 1 cut(s) 375
BslI CCNNNNNNNGG 2 cut(s) 17, 238
BsmAI GTCTC 1 cut(s) 580
BsmFI GGGAC 1 cut(s) 375
BsmI GAATGC 1 cut(s) 107
BsnI GGCC 2 cut(s) 291, 474
Bso31I GGTCTC 1 cut(s) 580
Bsp13I TCCGGA 1 cut(s) 570
Bsp143I GATC 2 cut(s) 250, 595
BspACI CCGC 5 cut(s) 349, 475, 477, 566, 581
BspANI GGCC 2 cut(s) 291, 474
BspCNI CTCAG 1 cut(s) 576
BspEI TCCGGA 1 cut(s) 570
BspFNI CGCG 2 cut(s) 351, 477
BspLI GGNNCC 2 cut(s) 263, 579
BspMAI CTGCAG 1 cut(s) 61
BspMI ACCTGC 1 cut(s) 273
BspPI GGATC 1 cut(s) 245
BspT107I GGYRCC 2 cut(s) 261, 577
BspTI CTTAAG 1 cut(s) 29
BspTNI GGTCTC 1 cut(s) 580
BsrBI CCGCTC 1 cut(s) 568
BsrFI RCCGGY 1 cut(s) 291
BsrI ACTGG 3 cut(s) 254, 491, 616
BssAI RCCGGY 1 cut(s) 291
BssECI CCNNGG 5 cut(s) 16, 156, 394, 431, 475
BssMI GATC 2 cut(s) 250, 595
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 3 cut(s) 18, 396, 432
Bst4CI ACNGT 1 cut(s) 536
BstAFI CTTAAG 1 cut(s) 29
BstC8I GCNNGC 5 cut(s) 148, 293, 297, 384, 648
BstDEI CTNAG 1 cut(s) 584
BstDSI CCRYGG 1 cut(s) 475
BstF5I GGATG 2 cut(s) 526, 562
BstFNI CGCG 2 cut(s) 351, 477
BstH2I RGCGCY 1 cut(s) 11
BstHHI GCGC 5 cut(s) 10, 107, 207, 223, 353
BstKTI GATC 2 cut(s) 253, 598
BstMAI GTCTC 1 cut(s) 580
BstMBI GATC 2 cut(s) 250, 595
BstMWI GCNNNNNNNGC 2 cut(s) 65, 74
BstNI CCWGG 3 cut(s) 18, 396, 432
BstNSI RCATGY 1 cut(s) 382
BstSCI CCNGG 3 cut(s) 16, 394, 430
BstSFI CTRYAG 1 cut(s) 57
BstUI CGCG 2 cut(s) 351, 477
BstV1I GCAGC 2 cut(s) 31, 203
BstX2I RGATCY 1 cut(s) 595
BstYI RGATCY 1 cut(s) 595
BsuRI GGCC 2 cut(s) 291, 474
BtgI CCRYGG 1 cut(s) 475
BtsCI GGATG 2 cut(s) 526, 562
BtsI GCAGTG 2 cut(s) 54, 66
BtsIMutI CAGTG 2 cut(s) 54, 66
BveI ACCTGC 1 cut(s) 273
Cac8I GCNNGC 5 cut(s) 148, 293, 297, 384, 648
CfoI GCGC 5 cut(s) 10, 107, 207, 223, 353
Cfr10I RCCGGY 1 cut(s) 291
Cfr42I CCGCGG 1 cut(s) 478
Csp6I GTAC 4 cut(s) 37, 112, 262, 484
CviAII CATG 2 cut(s) 379, 672
CviQI GTAC 4 cut(s) 37, 112, 262, 484
DdeI CTNAG 1 cut(s) 584
DpnI GATC 2 cut(s) 252, 597
DpnII GATC 2 cut(s) 250, 595
EaeI YGGCCR 2 cut(s) 289, 472
Eco130I CCWWGG 1 cut(s) 156
Eco31I GGTCTC 1 cut(s) 580
Eco57I CTGAAG 1 cut(s) 162
EcoRII CCWGG 3 cut(s) 16, 394, 430
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 2 cut(s) 382, 675
FaqI GGGAC 1 cut(s) 375
FatI CATG 2 cut(s) 378, 671
FauI CCCGC 2 cut(s) 356, 470
FauNDI CATATG 1 cut(s) 632
FblI GTMKAC 1 cut(s) 375
Fnu4HI GCNGC 4 cut(s) 45, 192, 475, 566
FokI GGATG 2 cut(s) 533, 569
Fsp4HI GCNGC 4 cut(s) 45, 192, 475, 566
FspBI CTAG 3 cut(s) 41, 300, 317
GlaI GCGC 5 cut(s) 9, 106, 206, 222, 352
GluI GCNGC 4 cut(s) 45, 192, 475, 566
GsuI CTGGAG 1 cut(s) 637
HaeII RGCGCY 1 cut(s) 11
HaeIII GGCC 2 cut(s) 291, 474
HapII CCGG 2 cut(s) 292, 571
HhaI GCGC 5 cut(s) 10, 107, 207, 223, 353
Hin1II CATG 2 cut(s) 382, 675
Hin6I GCGC 5 cut(s) 8, 105, 205, 221, 351
HinP1I GCGC 5 cut(s) 8, 105, 205, 221, 351
HincII GTYRAC 2 cut(s) 376, 609
HindII GTYRAC 2 cut(s) 376, 609
HpaII CCGG 2 cut(s) 292, 571
HphI GGTGA 1 cut(s) 557
Hpy166II GTNNAC 5 cut(s) 112, 376, 466, 484, 609
Hpy188I TCNGA 1 cut(s) 556
Hpy188III TCNNGA 1 cut(s) 571
Hpy8I GTNNAC 5 cut(s) 112, 376, 466, 484, 609
HpyAV CCTTC 2 cut(s) 568, 650
HpyCH4III ACNGT 1 cut(s) 536
HpyCH4V TGCA 5 cut(s) 47, 59, 191, 339, 421
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 74
HpyF3I CTNAG 1 cut(s) 584
Hsp92II CATG 2 cut(s) 382, 675
HspAI GCGC 5 cut(s) 8, 105, 205, 221, 351
Kpn2I TCCGGA 1 cut(s) 570
KpnI GGTACC 1 cut(s) 265
KroI GCCGGC 1 cut(s) 291
KroNI GCCGGC 1 cut(s) 293
KspI CCGCGG 1 cut(s) 478
Kzo9I GATC 2 cut(s) 250, 595
LmnI GCTCC 4 cut(s) 234, 315, 494, 573
Lsp1109I GCAGC 2 cut(s) 31, 203
MaeI CTAG 3 cut(s) 41, 300, 317
MaeIII GTNAC 1 cut(s) 536
MalI GATC 2 cut(s) 252, 597
MbiI CCGCTC 1 cut(s) 568
MboI GATC 2 cut(s) 250, 595
MboII GAAGA 2 cut(s) 110, 416
MflI RGATCY 1 cut(s) 595
MluCI AATT 4 cut(s) 408, 437, 455, 498
MmeI TCCRAC 1 cut(s) 337
MnlI CCTC 2 cut(s) 185, 612
MroI TCCGGA 1 cut(s) 570
MroNI GCCGGC 1 cut(s) 291
MroXI GAANNNNTTC 1 cut(s) 408
MseI TTAA 2 cut(s) 30, 357
MslI CAYNNNNRTG 3 cut(s) 59, 519, 543
MspA1I CMGCKG 2 cut(s) 477, 583
MspCI CTTAAG 1 cut(s) 29
MspI CCGG 2 cut(s) 292, 571
MspR9I CCNGG 3 cut(s) 18, 396, 432
Mva1269I GAATGC 1 cut(s) 107
MvaI CCWGG 3 cut(s) 18, 396, 432
MvnI CGCG 2 cut(s) 351, 477
MwoI GCNNNNNNNGC 2 cut(s) 65, 74
NaeI GCCGGC 1 cut(s) 293
NdeI CATATG 1 cut(s) 632
NdeII GATC 2 cut(s) 250, 595
NgoMIV GCCGGC 1 cut(s) 291
NlaIII CATG 2 cut(s) 382, 675
NlaIV GGNNCC 2 cut(s) 263, 579
NmuCI GTSAC 1 cut(s) 536
NspI RCATGY 1 cut(s) 382
OliI CACNNNNGTG 2 cut(s) 59, 543
PctI GAATGC 1 cut(s) 107
PdiI GCCGGC 1 cut(s) 293
PdmI GAANNNNTTC 1 cut(s) 408
PflMI CCANNNNNTGG 2 cut(s) 17, 238
PkrI GCNGC 4 cut(s) 46, 193, 476, 567
PsiI TTATAA 1 cut(s) 626
Psp6I CCWGG 3 cut(s) 16, 394, 430
PspGI CCWGG 3 cut(s) 16, 394, 430
PspN4I GGNNCC 2 cut(s) 263, 579
PstI CTGCAG 1 cut(s) 61
PsuI RGATCY 1 cut(s) 595
RsaI GTAC 4 cut(s) 38, 113, 263, 485
RsaNI GTAC 4 cut(s) 37, 112, 262, 484
RseI CAYNNNNRTG 3 cut(s) 59, 519, 543
SacII CCGCGG 1 cut(s) 478
SalI GTCGAC 1 cut(s) 374
SaqAI TTAA 2 cut(s) 30, 357
SatI GCNGC 4 cut(s) 45, 192, 475, 566
Sau3AI GATC 2 cut(s) 250, 595
ScrFI CCNGG 3 cut(s) 18, 396, 432
SfcI CTRYAG 1 cut(s) 57
Sfr303I CCGCGG 1 cut(s) 478
SgrBI CCGCGG 1 cut(s) 478
SmiMI CAYNNNNRTG 3 cut(s) 59, 519, 543
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 4 cut(s) 408, 437, 455, 498
SsiI CCGC 5 cut(s) 349, 475, 477, 566, 581
SspMI CTAG 3 cut(s) 41, 300, 317
StyD4I CCNGG 3 cut(s) 16, 394, 430
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 536
TaqI TCGA 1 cut(s) 375
TasI AATT 4 cut(s) 408, 437, 455, 498
TatI WGTACW 2 cut(s) 111, 483
TauI GCSGC 2 cut(s) 477, 568
Tru1I TTAA 2 cut(s) 30, 357
Tru9I TTAA 2 cut(s) 30, 357
TscAI CASTG 2 cut(s) 61, 66
TseFI GTSAC 1 cut(s) 536
TseI GCWGC 2 cut(s) 44, 191
Tsp45I GTSAC 1 cut(s) 536
TspDTI ATGAA 4 cut(s) 17, 102, 491, 573
TspRI CASTG 2 cut(s) 61, 66
Van91I CCANNNNNTGG 2 cut(s) 17, 238
Vha464I CTTAAG 1 cut(s) 29
XapI RAATTY 1 cut(s) 408
XceI RCATGY 1 cut(s) 382
XmiI GTMKAC 1 cut(s) 375
XmnI GAANNNNTTC 1 cut(s) 408
XspI CTAG 3 cut(s) 41, 300, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.