Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

19710986 .. 19714712

Gene Structure 3727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G015850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1920 bp

ATGAAGATATCTATAATCAGTGCAAGGATCAGATCCCACCGCCACCCCCTCCAAAGTACCCAAAAACGGGCAAACCCAGGAACACCGGCAAGTGGTGCAAATACCACGCGGACAGCGGCCACAATACAAACAGCTGCAACGCCCTCAAAACAGCCATTGAGACTTTATACCAAGGTCATTGACTGGAACCCAGAATGTCAGGCGGCGTTCCAAGGTCTAAAGGAATATTTGGCGGCAGTCCCTCTCCTTTCTGTCCCTGTCCAAGGAGAGACACTATTCATATATCTGGCGGTCTCGGCAACGGCAATAAGTTGCGCCATTGTTCGGCGGGAGGGTCAGGATGAACTCCCAGTATTCTACGCCGGCAGAGGTATGAACGGAGCAGAAACAAGGTATCCACCGTTGGAACAGCTGGCGCTTGCACTTATCGTTGCCGCCAGACGCCTTCGGCAGTATTTCCAGGCTCACACGATCCATGTGTTGACCAATCAACCGCTGAGACAGGTGATGCAGAACCCTGAACACTCAGGGCGACTCAGTAAGTGGGCAATTGAGCTCAGCGAATTTGACATCGAGTACAAGCCAAGAACCGCCATGAAGGGCCAGGCAGTAGCAGACTTCATCGCTGAACTTACTGAGCGTCAGCCAGAACCCGATACTCAAGCACAGCCCGGAACAGAAATGGTAACCAGTACAGGGGTACTTACCCCACAGTCGGATTGGGACCTACATGTGGACGGCTCCGCCTGCGCCAAGGCCAGCGGCGCCGGAGTCATCTTAACCGGACCCGGGGGACTGAACGCAGAATATGCGTTGAAATTCAACTTCAAAGCTTCAAACAATATGGCGGAGTACGAGGCGCTCATCGCCGGCCTACTCCTCGCCATTGACTCAGGTGCTGACAGCGTCAACATATTCAGCGACTCCCAACTAGTCGTCAACCAGGTCAACGACAGCTTCCAAGCCAAGGACCAGCAGCTAGCGGCGTATCTGGGGTACGTCAAAACGTTGCTAAAAAAGTTCAAGTTTCACACAATCACACAAATCCCCAGGGAAAAGAACGCTAAGGCTGATTCCCTGGCGAGACTGGCAACCGCCCAACCACATCAGAGTCCGGCGGACACAAGGGTGGAGTATCTTGACAAACCAAGTATCACAAAGACTCTGGCGGAAATCTTCAACATTCAGGTCAACCCCAGCTGGATGGACGAGATCATCATGTATAAGCGCAACGGAACGTTGCCAGAAGATAAGATCCAGGCAAGACAGCTCCAACGAAGAGCAACCCGCTACAACATCCAGCACGGCAAACTCTACCGCCAGGGATTCACCCATCCAAACCTCCGCTGTCTAACCCCAGAAGAGGGAAGGGTTGTTCTAACTGAAATCCATAGCGGAGAATGCGGAAACCACTCGGGCGCCAGATCCCTGGCCAACCGCACAATGCGACAAGGGTACTTCTGGCCCACACTTGGCGATGACGCCCGGCGGATTTCGAGGTCTTGCCACAAATGCCAGCAATTCGCAGATCTCCCACACGCACCAGCAGAGCCACTGTCAATCATCGTGGGCCCATGGATTCATTCTACGTGGGGCCTTGATCTGATGGGCAAATTCCAAACTGCCAAGGGTCAGTTCAAATACATCATTGTTGCCATCGATTACAACAGCAAGTGGATAGAGGCAGAGCCACTGACGGCAATAACTACCGCCAAGGTAATTCACTTCCTTTGGAAGAATATCTATTGCCGCTACGGTGTCCCACACACAATCATCACAGATAACGGCACACAGTTCAACAATGACGAGCTCATCTCCTTCACCATCAACTTGGGCACCAAGCTGAGGTTTGCATCTGTCGCCCACCCCCAGACCAACGGCCAGGTCGAAGCGGCGAACAAGATAATAAAAAGTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

639

Amino Acids

70.99

Weight (kDa)

9.1

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RT_RNaseH_2	PF17919	62 - 160	4.6e-16	RNase H-like domain found in reverse transcriptase
RT_RNaseH	PF17917	91 - 189	4.9e-16	RNase H-like domain found in reverse transcriptase
RNase_H	PF00075	243 - 322	2.3e-06	RNase H
RVT_3	PF13456	251 - 363	2e-19	Reverse transcriptase-like
Integrase_H2C2	PF17921	457 - 508	2.9e-08	Integrase zinc binding domain
rve	PF00665	530 - 623	6.1e-12	Integrase core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	764, 1418, 1835
AccII	CGCG	1 cut(s)	109
AclI	AACGTT	2 cut(s)	1007, 1238
AclWI	GGATC	5 cut(s)	27, 35, 466, 1249, 1419
AcoI	YGGCCR	3 cut(s)	117, 1431, 1879
AcsI	RAATTY	3 cut(s)	563, 818, 1613
AcyI	GRCGYC	4 cut(s)	442, 765, 1419, 1482
AfaI	GTAC	7 cut(s)	58, 578, 694, 702, 854, 998, 1457
AflIII	ACRYGT	1 cut(s)	730
AgsI	TTSAA	8 cut(s)	817, 823, 829, 837, 1024, 1180, 1639, 1798
AhlI	ACTAGT	1 cut(s)	931
AjuI	GAANNNNNNNTTGG	2 cut(s)	1619, 1651
AleI	CACNNNNGTG	1 cut(s)	1127
AloI	GAACNNNNNNTCC	2 cut(s)	1359, 1391
Alw21I	GWGCWC	2 cut(s)	558, 1812
Alw26I	GTCTC	5 cut(s)	154, 263, 298, 493, 1078
AlwI	GGATC	5 cut(s)	27, 35, 466, 1249, 1419
AlwNI	CAGNNNCTG	1 cut(s)	899
Ama87I	CYCGRG	2 cut(s)	788, 1414
AoxI	GGCC	9 cut(s)	117, 601, 756, 871, 1431, 1463, 1570, 1594, 1879
ApaI	GGGCCC	1 cut(s)	1574
ApeKI	GCWGC	2 cut(s)	134, 976
ApoI	RAATTY	3 cut(s)	563, 818, 1613
AspLEI	GCGC	7 cut(s)	317, 418, 752, 767, 862, 1230, 1421
AspS9I	GGNCC	8 cut(s)	601, 724, 785, 970, 1464, 1570, 1571, 1594
AsuC2I	CCSGG	4 cut(s)	672, 789, 790, 1486
AsuHPI	GGTGA	3 cut(s)	517, 1321, 1813
AsuNHI	GCTAGC	1 cut(s)	979
AvaI	CYCGRG	2 cut(s)	788, 1414
AvaII	GGWCC	3 cut(s)	724, 785, 970
BaeGI	GKGCMC	2 cut(s)	1574, 1838
BalI	TGGCCA	1 cut(s)	1433
BanI	GGYRCC	3 cut(s)	764, 1418, 1835
BanII	GRGCYC	3 cut(s)	558, 1574, 1812
Bbv12I	GWGCWC	2 cut(s)	558, 1812
BbvCI	CCTCAGC	1 cut(s)	1844
BbvI	GCAGC	2 cut(s)	121, 988
BccI	CCATC	5 cut(s)	1198, 1341, 1600, 1664, 1832
BceAI	ACGGC	6 cut(s)	318, 754, 1321, 1713, 1801, 1894
BciVI	GTATCC	1 cut(s)	405
BcnI	CCSGG	4 cut(s)	672, 789, 790, 1486
BcoDI	GTCTC	5 cut(s)	154, 263, 298, 493, 1078
BcuI	ACTAGT	1 cut(s)	931
BfaI	CTAG	2 cut(s)	932, 980
BfoI	RGCGCY	4 cut(s)	419, 768, 863, 1422
BfuI	GTATCC	1 cut(s)	405
BglII	AGATCT	1 cut(s)	1528
BlpI	GCTNAGC	1 cut(s)	557
Bme18I	GGWCC	3 cut(s)	724, 785, 970
BmeT110I	CYCGRG	2 cut(s)	788, 1414
BmgT120I	GGNCC	8 cut(s)	601, 724, 785, 970, 1464, 1570, 1571, 1594
BmiI	GGNNCC	9 cut(s)	188, 725, 742, 766, 787, 1420, 1572, 1595, 1837
BmrI	ACTGGG	1 cut(s)	344
BmsI	GCATC	2 cut(s)	498, 1862
BmtI	GCTAGC	1 cut(s)	983
BmuI	ACTGGG	1 cut(s)	344
BplI	GAGNNNNNCTC	2 cut(s)	1799, 1831
Bpu10I	CCTNAGC	2 cut(s)	1065, 1844
Bpu1102I	GCTNAGC	1 cut(s)	557
BpuEI	CTTGAG	1 cut(s)	645
BpuMI	CCSGG	4 cut(s)	672, 789, 790, 1486
Bsa29I	ATCGAT	1 cut(s)	1659
BsaAI	YACGTR	1 cut(s)	1590
BsaHI	GRCGYC	4 cut(s)	442, 765, 1419, 1482
BsaI	GGTCTC	1 cut(s)	298
BsaWI	WCCGGW	1 cut(s)	782
Bse118I	RCCGGY	3 cut(s)	85, 362, 869
Bse1I	ACTGG	4 cut(s)	188, 350, 690, 1092
BseCI	ATCGAT	1 cut(s)	1659
BseGI	GGATG	4 cut(s)	346, 1209, 1296, 1333
BseMII	CTCAG	7 cut(s)	488, 540, 550, 571, 627, 906, 1835
BseNI	ACTGG	4 cut(s)	188, 350, 690, 1092
BseRI	GAGGAG	1 cut(s)	869
BseSI	GKGCMC	2 cut(s)	1574, 1838
BseXI	GCAGC	2 cut(s)	121, 988
BseYI	CCCAGC	1 cut(s)	1196
Bsh1236I	CGCG	1 cut(s)	109
BshFI	GGCC	9 cut(s)	119, 603, 758, 873, 1433, 1465, 1572, 1596, 1881
BshNI	GGYRCC	3 cut(s)	764, 1418, 1835
BshVI	ATCGAT	1 cut(s)	1659
BsiHKAI	GWGCWC	2 cut(s)	558, 1812
BsiHKCI	CYCGRG	2 cut(s)	788, 1414
BsiSI	CCGG	9 cut(s)	86, 363, 672, 768, 783, 789, 870, 1115, 1486
BslFI	GGGAC	5 cut(s)	224, 239, 737, 807, 1745
BsmAI	GTCTC	5 cut(s)	154, 263, 298, 493, 1078
BsmFI	GGGAC	5 cut(s)	224, 239, 737, 807, 1745
BsmI	GAATGC	1 cut(s)	1406
BsnI	GGCC	9 cut(s)	119, 603, 758, 873, 1433, 1465, 1572, 1596, 1881
Bso31I	GGTCTC	1 cut(s)	298
BsoBI	CYCGRG	2 cut(s)	788, 1414
Bsp120I	GGGCCC	1 cut(s)	1570
Bsp1286I	GDGCHC	4 cut(s)	558, 1574, 1812, 1838
Bsp143I	GATC	8 cut(s)	27, 32, 471, 1212, 1254, 1424, 1528, 1600
Bsp1720I	GCTNAGC	1 cut(s)	557
Bsp19I	CCATGG	1 cut(s)	1574
BspANI	GGCC	9 cut(s)	119, 603, 758, 873, 1433, 1465, 1572, 1596, 1881
BspCNI	CTCAG	7 cut(s)	489, 539, 549, 570, 628, 905, 1836
BspDI	ATCGAT	1 cut(s)	1659
BspFNI	CGCG	1 cut(s)	109
BspLI	GGNNCC	9 cut(s)	188, 725, 742, 766, 787, 1420, 1572, 1595, 1837
BspOI	GCTAGC	1 cut(s)	983
BspPI	GGATC	5 cut(s)	27, 35, 466, 1249, 1419
BspQI	GCTCTTC	1 cut(s)	1273
BspT107I	GGYRCC	3 cut(s)	764, 1418, 1835
BspTNI	GGTCTC	1 cut(s)	298
BsrFI	RCCGGY	3 cut(s)	85, 362, 869
BsrI	ACTGG	4 cut(s)	188, 350, 690, 1092
BssAI	RCCGGY	3 cut(s)	85, 362, 869
BssMI	GATC	8 cut(s)	27, 32, 471, 1212, 1254, 1424, 1528, 1600
BssNI	GRCGYC	4 cut(s)	442, 765, 1419, 1482
BssT1I	CCWWGG	8 cut(s)	171, 211, 262, 753, 966, 1574, 1626, 1713
Bst4CI	ACNGT	5 cut(s)	402, 714, 1557, 1757, 1794
Bst6I	CTCTTC	2 cut(s)	1273, 1356
BstACI	GRCGYC	4 cut(s)	442, 765, 1419, 1482
BstAPI	GCANNNNNTGC	2 cut(s)	95, 809
BstBAI	YACGTR	1 cut(s)	1590
BstC8I	GCNNGC	8 cut(s)	364, 414, 420, 748, 760, 871, 981, 1517
BstDEI	CTNAG	8 cut(s)	497, 526, 536, 557, 636, 892, 1065, 1844
BstDSI	CCRYGG	1 cut(s)	1574
BstEII	GGTNACC	1 cut(s)	685
BstENI	CCTNNNNNAGG	1 cut(s)	261
BstF5I	GGATG	4 cut(s)	346, 1209, 1296, 1333
BstFNI	CGCG	1 cut(s)	109
BstH2I	RGCGCY	4 cut(s)	419, 768, 863, 1422
BstHHI	GCGC	7 cut(s)	317, 418, 752, 767, 862, 1230, 1421
BstKTI	GATC	8 cut(s)	30, 35, 474, 1215, 1257, 1427, 1531, 1603
BstMAI	GTCTC	5 cut(s)	154, 263, 298, 493, 1078
BstMBI	GATC	8 cut(s)	27, 32, 471, 1212, 1254, 1424, 1528, 1600
BstNSI	RCATGY	1 cut(s)	734
BstPI	GGTNACC	1 cut(s)	685
BstSLI	GKGCMC	2 cut(s)	1574, 1838
BstUI	CGCG	1 cut(s)	109
BstV1I	GCAGC	2 cut(s)	121, 988
BstX2I	RGATCY	4 cut(s)	32, 1254, 1424, 1528
BstXI	CCANNNNNNTGG	3 cut(s)	1204, 1429, 1831
BstYI	RGATCY	4 cut(s)	32, 1254, 1424, 1528
Bsu15I	ATCGAT	1 cut(s)	1659
BsuI	GTATCC	1 cut(s)	405
BsuRI	GGCC	9 cut(s)	119, 603, 758, 873, 1433, 1465, 1572, 1596, 1881
BsuTUI	ATCGAT	1 cut(s)	1659
BtgI	CCRYGG	1 cut(s)	1574
BtgZI	GCGATG	3 cut(s)	607, 850, 1491
BtsCI	GGATG	4 cut(s)	346, 1209, 1296, 1333
BtsIMutI	CAGTG	3 cut(s)	25, 1553, 1691
Cac8I	GCNNGC	8 cut(s)	364, 414, 420, 748, 760, 871, 981, 1517
CaiI	CAGNNNCTG	1 cut(s)	899
CfoI	GCGC	7 cut(s)	317, 418, 752, 767, 862, 1230, 1421
Cfr10I	RCCGGY	3 cut(s)	85, 362, 869
Cfr13I	GGNCC	8 cut(s)	601, 724, 785, 970, 1464, 1570, 1571, 1594
Cfr9I	CCCGGG	1 cut(s)	788
ClaI	ATCGAT	1 cut(s)	1659
CseI	GACGC	4 cut(s)	450, 629, 895, 1490
CsiI	ACCWGGT	1 cut(s)	942
Csp6I	GTAC	7 cut(s)	57, 577, 693, 701, 853, 997, 1456
CspCI	CAANNNNNGTGG	2 cut(s)	1548, 1583
CviAII	CATG	5 cut(s)	476, 595, 731, 1219, 1575
CviQI	GTAC	7 cut(s)	57, 577, 693, 701, 853, 997, 1456
DdeI	CTNAG	8 cut(s)	497, 526, 536, 557, 636, 892, 1065, 1844
DinI	GGCGCC	2 cut(s)	766, 1420
DpnI	GATC	8 cut(s)	29, 34, 473, 1214, 1256, 1426, 1530, 1602
DpnII	GATC	8 cut(s)	27, 32, 471, 1212, 1254, 1424, 1528, 1600
EaeI	YGGCCR	3 cut(s)	117, 1431, 1879
Eam1104I	CTCTTC	2 cut(s)	1273, 1356
EarI	CTCTTC	2 cut(s)	1273, 1356
EciI	GGCGGA	5 cut(s)	733, 863, 1133, 1184, 1504
Ecl136II	GAGCTC	2 cut(s)	556, 1810
Eco130I	CCWWGG	8 cut(s)	171, 211, 262, 753, 966, 1574, 1626, 1713
Eco24I	GRGCYC	3 cut(s)	558, 1574, 1812
Eco31I	GGTCTC	1 cut(s)	298
Eco32I	GATATC	1 cut(s)	9
Eco47I	GGWCC	3 cut(s)	724, 785, 970
Eco53kI	GAGCTC	2 cut(s)	556, 1810
Eco88I	CYCGRG	2 cut(s)	788, 1414
Eco91I	GGTNACC	1 cut(s)	685
EcoICRI	GAGCTC	2 cut(s)	556, 1810
EcoNI	CCTNNNNNAGG	1 cut(s)	261
EcoO109I	RGGNCCY	2 cut(s)	724, 1594
EcoO65I	GGTNACC	1 cut(s)	685
EcoRV	GATATC	1 cut(s)	9
EcoT14I	CCWWGG	8 cut(s)	171, 211, 262, 753, 966, 1574, 1626, 1713
EcoT38I	GRGCYC	3 cut(s)	558, 1574, 1812
EgeI	GGCGCC	2 cut(s)	766, 1420
EheI	GGCGCC	2 cut(s)	766, 1420
ErhI	CCWWGG	8 cut(s)	171, 211, 262, 753, 966, 1574, 1626, 1713
FaeI	CATG	5 cut(s)	479, 598, 734, 1222, 1578
FaqI	GGGAC	5 cut(s)	224, 239, 737, 807, 1745
FatI	CATG	5 cut(s)	475, 594, 730, 1218, 1574
FauI	CCCGC	2 cut(s)	321, 1295
FokI	GGATG	4 cut(s)	353, 1216, 1283, 1320
FriOI	GRGCYC	3 cut(s)	558, 1574, 1812
FspBI	CTAG	2 cut(s)	932, 980
GlaI	GCGC	7 cut(s)	316, 417, 751, 766, 861, 1229, 1420
GsaI	CCCAGC	1 cut(s)	1200
HaeII	RGCGCY	4 cut(s)	419, 768, 863, 1422
HaeIII	GGCC	9 cut(s)	119, 603, 758, 873, 1433, 1465, 1572, 1596, 1881
HapII	CCGG	9 cut(s)	86, 363, 672, 768, 783, 789, 870, 1115, 1486
HgaI	GACGC	4 cut(s)	450, 629, 895, 1490
HhaI	GCGC	7 cut(s)	317, 418, 752, 767, 862, 1230, 1421
Hin1I	GRCGYC	4 cut(s)	442, 765, 1419, 1482
Hin1II	CATG	5 cut(s)	479, 598, 734, 1222, 1578
Hin6I	GCGC	7 cut(s)	315, 416, 750, 765, 860, 1228, 1419
HinP1I	GCGC	7 cut(s)	315, 416, 750, 765, 860, 1228, 1419
HincII	GTYRAC	5 cut(s)	483, 910, 940, 949, 1192
HindII	GTYRAC	5 cut(s)	483, 910, 940, 949, 1192
HindIII	AAGCTT	1 cut(s)	831
HinfI	GANTC	9 cut(s)	534, 771, 890, 923, 1073, 1111, 1162, 1326, 1579
HpaII	CCGG	9 cut(s)	86, 363, 672, 768, 783, 789, 870, 1115, 1486
HphI	GGTGA	3 cut(s)	517, 1321, 1813
Hpy166II	GTNNAC	6 cut(s)	483, 736, 910, 940, 949, 1192
Hpy188I	TCNGA	4 cut(s)	32, 718, 1110, 1605
Hpy188III	TCNNGA	2 cut(s)	338, 1139
Hpy8I	GTNNAC	6 cut(s)	483, 736, 910, 940, 949, 1192
HpyAV	CCTTC	4 cut(s)	455, 592, 1362, 1828
HpyCH4III	ACNGT	5 cut(s)	402, 714, 1557, 1757, 1794
HpyCH4IV	ACGT	4 cut(s)	999, 1007, 1238, 1589
HpyCH4V	TGCA	6 cut(s)	23, 98, 137, 422, 511, 1853
HpyF3I	CTNAG	8 cut(s)	497, 526, 536, 557, 636, 892, 1065, 1844
HpySE526I	ACGT	4 cut(s)	999, 1007, 1238, 1589
Hsp92I	GRCGYC	4 cut(s)	442, 765, 1419, 1482
Hsp92II	CATG	5 cut(s)	479, 598, 734, 1222, 1578
HspAI	GCGC	7 cut(s)	315, 416, 750, 765, 860, 1228, 1419
KasI	GGCGCC	2 cut(s)	764, 1418
KroI	GCCGGC	2 cut(s)	362, 869
KroNI	GCCGGC	2 cut(s)	364, 871
Kzo9I	GATC	8 cut(s)	27, 32, 471, 1212, 1254, 1424, 1528, 1600
LguI	GCTCTTC	1 cut(s)	1273
LmnI	GCTCC	3 cut(s)	380, 746, 1275
Lsp1109I	GCAGC	2 cut(s)	121, 988
LweI	GCATC	2 cut(s)	498, 1862
MabI	ACCWGGT	1 cut(s)	942
MaeI	CTAG	2 cut(s)	932, 980
MaeII	ACGT	4 cut(s)	999, 1007, 1238, 1589
MaeIII	GTNAC	1 cut(s)	685
MalI	GATC	8 cut(s)	29, 34, 473, 1214, 1256, 1426, 1530, 1602
MboI	GATC	8 cut(s)	27, 32, 471, 1212, 1254, 1424, 1528, 1600
MboII	GAAGA	6 cut(s)	16, 1168, 1259, 1290, 1373, 1747
MfeI	CAATTG	1 cut(s)	549
MflI	RGATCY	4 cut(s)	32, 1254, 1424, 1528
MhlI	GDGCHC	4 cut(s)	558, 1574, 1812, 1838
MlsI	TGGCCA	1 cut(s)	1433
MluCI	AATT	6 cut(s)	549, 563, 818, 1520, 1613, 1719
MluNI	TGGCCA	1 cut(s)	1433
Mly113I	GGCGCC	2 cut(s)	765, 1419
MlyI	GAGTC	6 cut(s)	528, 780, 884, 917, 1120, 1156
MmeI	TCCRAC	3 cut(s)	384, 696, 1297
Mox20I	TGGCCA	1 cut(s)	1433
MroNI	GCCGGC	2 cut(s)	362, 869
MscI	TGGCCA	1 cut(s)	1433
MseI	TTAA	2 cut(s)	779, 1918
MslI	CAYNNNNRTG	1 cut(s)	1127
Msp20I	TGGCCA	1 cut(s)	1433
MspA1I	CMGCKG	7 cut(s)	116, 134, 412, 496, 762, 1200, 1347
MspI	CCGG	9 cut(s)	86, 363, 672, 768, 783, 789, 870, 1115, 1486
MunI	CAATTG	1 cut(s)	549
Mva1269I	GAATGC	1 cut(s)	1406
MvnI	CGCG	1 cut(s)	109
NaeI	GCCGGC	2 cut(s)	364, 871
NarI	GGCGCC	2 cut(s)	765, 1419
NciI	CCSGG	4 cut(s)	672, 789, 790, 1486
NcoI	CCATGG	1 cut(s)	1574
NdeII	GATC	8 cut(s)	27, 32, 471, 1212, 1254, 1424, 1528, 1600
NgoMIV	GCCGGC	2 cut(s)	362, 869
NheI	GCTAGC	1 cut(s)	979
NlaIII	CATG	5 cut(s)	479, 598, 734, 1222, 1578
NlaIV	GGNNCC	9 cut(s)	188, 725, 742, 766, 787, 1420, 1572, 1595, 1837
NmeAIII	GCCGAG	1 cut(s)	275
NspI	RCATGY	1 cut(s)	734
OliI	CACNNNNGTG	1 cut(s)	1127
PasI	CCCWGGG	1 cut(s)	1050
PciI	ACATGT	1 cut(s)	730
PciSI	GCTCTTC	1 cut(s)	1273
PcsI	WCGNNNNNNNCGW	1 cut(s)	1884
PctI	GAATGC	1 cut(s)	1406
PdiI	GCCGGC	2 cut(s)	364, 871
PfeI	GAWTC	3 cut(s)	1073, 1326, 1579
PflFI	GACNNNGTC	1 cut(s)	905
PleI	GAGTC	6 cut(s)	528, 779, 884, 917, 1119, 1156
PluTI	GGCGCC	2 cut(s)	768, 1422
PpsI	GAGTC	6 cut(s)	528, 779, 884, 917, 1119, 1156
Ppu21I	YACGTR	1 cut(s)	1590
PpuMI	RGGWCCY	1 cut(s)	724
PscI	ACATGT	1 cut(s)	730
Psp124BI	GAGCTC	2 cut(s)	558, 1812
Psp1406I	AACGTT	2 cut(s)	1007, 1238
Psp5II	RGGWCCY	1 cut(s)	724
PspEI	GGTNACC	1 cut(s)	685
PspFI	CCCAGC	1 cut(s)	1196
PspN4I	GGNNCC	9 cut(s)	188, 725, 742, 766, 787, 1420, 1572, 1595, 1837
PspOMI	GGGCCC	1 cut(s)	1570
PspPI	GGNCC	8 cut(s)	601, 724, 785, 970, 1464, 1570, 1571, 1594
PspPPI	RGGWCCY	1 cut(s)	724
PstNI	CAGNNNCTG	1 cut(s)	899
PsuI	RGATCY	4 cut(s)	32, 1254, 1424, 1528
PsyI	GACNNNGTC	1 cut(s)	905
PvuII	CAGCTG	3 cut(s)	134, 412, 1200
RsaI	GTAC	7 cut(s)	58, 578, 694, 702, 854, 998, 1457
RsaNI	GTAC	7 cut(s)	57, 577, 693, 701, 853, 997, 1456
RseI	CAYNNNNRTG	1 cut(s)	1127
SacI	GAGCTC	2 cut(s)	558, 1812
SapI	GCTCTTC	1 cut(s)	1273
SaqAI	TTAA	2 cut(s)	779, 1918
Sau3AI	GATC	8 cut(s)	27, 32, 471, 1212, 1254, 1424, 1528, 1600
Sau96I	GGNCC	8 cut(s)	601, 724, 785, 970, 1464, 1570, 1571, 1594
SchI	GAGTC	6 cut(s)	528, 780, 884, 917, 1120, 1156
SduI	GDGCHC	4 cut(s)	558, 1574, 1812, 1838
SexAI	ACCWGGT	1 cut(s)	942
SfaNI	GCATC	2 cut(s)	498, 1862
SfoI	GGCGCC	2 cut(s)	766, 1420
SinI	GGWCC	3 cut(s)	724, 785, 970
SmaI	CCCGGG	1 cut(s)	790
SmiMI	CAYNNNNRTG	1 cut(s)	1127
SmlI	CTYRAG	1 cut(s)	660
SmoI	CTYRAG	1 cut(s)	660
SpeI	ACTAGT	1 cut(s)	931
Sse9I	AATT	6 cut(s)	549, 563, 818, 1520, 1613, 1719
SspDI	GGCGCC	2 cut(s)	764, 1418
SspI	AATATT	1 cut(s)	227
SspMI	CTAG	2 cut(s)	932, 980
SstI	GAGCTC	2 cut(s)	558, 1812
StyI	CCWWGG	8 cut(s)	171, 211, 262, 753, 966, 1574, 1626, 1713
TaaI	ACNGT	5 cut(s)	402, 714, 1557, 1757, 1794
TaiI	ACGT	4 cut(s)	1002, 1010, 1241, 1592
TaqI	TCGA	4 cut(s)	573, 1496, 1659, 1887
TasI	AATT	6 cut(s)	549, 563, 818, 1520, 1613, 1719
TatI	WGTACW	2 cut(s)	576, 692
TauI	GCSGC	8 cut(s)	119, 206, 236, 437, 765, 986, 1752, 1895
TfiI	GAWTC	3 cut(s)	1073, 1326, 1579
Tru1I	TTAA	2 cut(s)	779, 1918
Tru9I	TTAA	2 cut(s)	779, 1918
TscAI	CASTG	3 cut(s)	25, 1560, 1698
TseI	GCWGC	2 cut(s)	134, 976
TspDTI	ATGAA	7 cut(s)	17, 268, 357, 389, 610, 611, 1571
TspGWI	ACGGA	2 cut(s)	393, 1248
TspMI	CCCGGG	1 cut(s)	788
TspRI	CASTG	3 cut(s)	25, 1560, 1698
Tth111I	GACNNNGTC	1 cut(s)	905
VpaK11BI	GGWCC	3 cut(s)	724, 785, 970
XagI	CCTNNNNNAGG	1 cut(s)	261
XapI	RAATTY	3 cut(s)	563, 818, 1613
XceI	RCATGY	1 cut(s)	734
XcmI	CCANNNNNNNNNTGG	1 cut(s)	717
XmaI	CCCGGG	1 cut(s)	788
XspI	CTAG	2 cut(s)	932, 980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.