Rroxscaffold_4G00321830

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
51481209 .. 51482728
1520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00321830.1

Sequence Viewer

Length: 936 bp
ATGAACGCCATGTTTGCCGAACATCCGGGCAAAATCAACGAAGTCTACGTGGATGATATGTTGGTCAAAAGCATAAAGGCCAGCGAACATGTAGCAAACCTCGAATCATATTTGCCATCCTTTTGGCCTACGGTATGCGCCTCAACCCGAAAAATGCTTCTTCGGCATCACAACAGCAAATTTCTAGGTTATATAGTCAATGAACGGGGCATAGAGGCCAACCCCGACAAGGCCATCGAGCTCGCCGAGTTCGACATCGACTACAAACCAAGAACAGCCATGAAGGGTCGCGGTGGCGAGCTTCATCGACCCCGTCCCCCAGAATCGCCCGGAACCTACACGTGGACGGCTCCTTCCGGGGCCGGGGCCGGGGGACTAAATGTGGAATACGCGTTAAAGTTCAATTTCAAAACCTCAAACAACATGGTGGAGTATGAAGCGCTCATTGCCTCGACTACTCCTTATTGCCATCGACTCGGGGCCGACAAGTGTCAACATATTCGGCGACTCCCGGTTAGTCGTCAACCGTGTCAATGTCGGTTTCCGGGCCAAAGACCAACGGCTAGCGGCATACTTGGGGTACGCCAAGACGCTCCTAAAAAAATTCAAATTTCACACCATCACTCGCATCCCCAGGGAAAAGAACGCCAAGGCCGATTCACCGGCACGAATAGCAACCGCCCACCACATCAAAGTCCGGCGGACACAAGGGTGGAATGTCTTGACAAGCCAAGCATCACAAAAACCCTAGCGGAGATCTTCAACATTGAGGTAAATCCTAGTTGGATGGACAAAATCATCGAATACAAGCTCAATGGGACGGTGCCGGAGGACAAGCTCGAAGCACGACGGCTCGAGCGGAGAGCAACCCGCTACAACATCCGAGAATGGCAAGCTTTACGACGGGGGTTCACCCACCCCAACCTCCGTGTCTAA

Protein Analysis

311

Amino Acids

35.35

Weight (kDa)

9.53

Isoelectric Point (pI)

44.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000250)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica Prupe.6G166700_v2.0.a1
pyrus_communis pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis RchiOBHm_Chr5g0018261
rosa_laevigata RLG00000022447
rosa_multiflora Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa Rorug02G0381000
rosa_samantha Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 823
AccBSI CCGCTC 1 cut(s) 859
AccI GTMKAC 1 cut(s) 45
AccII CGCG 2 cut(s) 291, 392
AciI CCGC 7 cut(s) 291, 567, 679, 701, 752, 859, 871
AcsI RAATTY 3 cut(s) 179, 603, 609
AcvI CACGTG 1 cut(s) 342
AfaI GTAC 1 cut(s) 582
AfeI AGCGCT 1 cut(s) 441
AfiI CCNNNNNNNGG 4 cut(s) 229, 342, 363, 369
AflIII ACRYGT 3 cut(s) 88, 339, 390
AgsI TTSAA 4 cut(s) 403, 409, 608, 763
AjnI CCWGG 1 cut(s) 633
AleI CACNNNNGTG 1 cut(s) 710
AluBI AGCT 5 cut(s) 241, 301, 811, 838, 896
AluI AGCT 5 cut(s) 241, 301, 811, 838, 896
Alw21I GWGCWC 1 cut(s) 243
Ama87I CYCGRG 2 cut(s) 476, 854
Aor51HI AGCGCT 1 cut(s) 441
AoxI GGCC 9 cut(s) 78, 125, 216, 231, 360, 366, 480, 547, 652
ApoI RAATTY 3 cut(s) 179, 603, 609
AspLEI GCGC 2 cut(s) 140, 442
AspS9I GGNCC 4 cut(s) 360, 366, 480, 547
AsuC2I CCSGG 7 cut(s) 27, 330, 358, 364, 370, 512, 546
AsuHPI GGTGA 2 cut(s) 652, 904
AsuNHI GCTAGC 1 cut(s) 563
AvaI CYCGRG 2 cut(s) 476, 854
BanI GGYRCC 1 cut(s) 823
BanII GRGCYC 1 cut(s) 243
BbrPI CACGTG 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 243
BccI CCATC 5 cut(s) 124, 242, 477, 627, 781
BceAI ACGGC 3 cut(s) 363, 576, 866
BciT130I CCWGG 1 cut(s) 635
BcnI CCSGG 7 cut(s) 27, 330, 358, 364, 370, 512, 546
BfaI CTAG 4 cut(s) 185, 564, 749, 780
BfoI RGCGCY 1 cut(s) 443
BglII AGATCT 1 cut(s) 756
BisI GCNGC 1 cut(s) 568
BlsI GCNGC 1 cut(s) 569
Bme1390I CCNGG 8 cut(s) 27, 330, 358, 364, 370, 512, 546, 635
BmeT110I CYCGRG 2 cut(s) 476, 854
BmgT120I GGNCC 4 cut(s) 360, 366, 480, 547
BmiI GGNNCC 6 cut(s) 334, 351, 361, 367, 481, 825
BmrFI CCNGG 8 cut(s) 27, 330, 358, 364, 370, 512, 546, 635
BmsI GCATC 3 cut(s) 175, 637, 744
BmtI GCTAGC 1 cut(s) 567
BoxI GACNNNNGTC 1 cut(s) 489
BpuMI CCSGG 7 cut(s) 27, 330, 358, 364, 370, 512, 546
BsaAI YACGTR 2 cut(s) 49, 342
BsaJI CCNNGG 6 cut(s) 357, 363, 369, 633, 634, 649
Bsc4I CCNNNNNNNGG 4 cut(s) 229, 342, 363, 369
Bse118I RCCGGY 1 cut(s) 662
Bse3DI GCAATG 1 cut(s) 444
BseBI CCWGG 1 cut(s) 635
BseDI CCNNGG 6 cut(s) 357, 363, 369, 633, 634, 649
BseGI GGATG 6 cut(s) 22, 58, 116, 628, 792, 879
BseLI CCNNNNNNNGG 4 cut(s) 229, 342, 363, 369
BseMI GCAATG 1 cut(s) 444
Bsh1236I CGCG 2 cut(s) 291, 392
BshFI GGCC 9 cut(s) 80, 127, 218, 233, 362, 368, 482, 549, 654
BshNI GGYRCC 1 cut(s) 823
BsiHKAI GWGCWC 1 cut(s) 243
BsiHKCI CYCGRG 2 cut(s) 476, 854
BslFI GGGAC 3 cut(s) 300, 387, 832
BslI CCNNNNNNNGG 4 cut(s) 229, 342, 363, 369
BsmFI GGGAC 3 cut(s) 300, 387, 832
BsnI GGCC 9 cut(s) 80, 127, 218, 233, 362, 368, 482, 549, 654
BsoBI CYCGRG 2 cut(s) 476, 854
Bsp1286I GDGCHC 1 cut(s) 243
Bsp143I GATC 1 cut(s) 756
BspACI CCGC 7 cut(s) 291, 567, 679, 701, 752, 859, 871
BspANI GGCC 9 cut(s) 80, 127, 218, 233, 362, 368, 482, 549, 654
BspFNI CGCG 2 cut(s) 291, 392
BspLI GGNNCC 6 cut(s) 334, 351, 361, 367, 481, 825
BspOI GCTAGC 1 cut(s) 567
BspT107I GGYRCC 1 cut(s) 823
BsrBI CCGCTC 1 cut(s) 859
BsrDI GCAATG 1 cut(s) 444
BsrFI RCCGGY 1 cut(s) 662
BssAI RCCGGY 1 cut(s) 662
BssECI CCNNGG 6 cut(s) 357, 363, 369, 633, 634, 649
BssMI GATC 1 cut(s) 756
BssT1I CCWWGG 1 cut(s) 649
Bst2UI CCWGG 1 cut(s) 635
Bst4CI ACNGT 3 cut(s) 133, 528, 823
BstBAI YACGTR 2 cut(s) 49, 342
BstC8I GCNNGC 5 cut(s) 82, 243, 299, 565, 894
BstF5I GGATG 6 cut(s) 22, 58, 116, 628, 792, 879
BstFNI CGCG 2 cut(s) 291, 392
BstH2I RGCGCY 1 cut(s) 443
BstHHI GCGC 2 cut(s) 140, 442
BstKTI GATC 1 cut(s) 759
BstMBI GATC 1 cut(s) 756
BstMWI GCNNNNNNNGC 4 cut(s) 14, 163, 446, 672
BstNI CCWGG 1 cut(s) 635
BstNSI RCATGY 1 cut(s) 92
BstPAI GACNNNNGTC 1 cut(s) 489
BstSCI CCNGG 8 cut(s) 25, 328, 356, 362, 368, 510, 544, 633
BstUI CGCG 2 cut(s) 291, 392
BstX2I RGATCY 1 cut(s) 756
BstXI CCANNNNNNTGG 1 cut(s) 123
BstYI RGATCY 1 cut(s) 756
BsuRI GGCC 9 cut(s) 80, 127, 218, 233, 362, 368, 482, 549, 654
BtsCI GGATG 6 cut(s) 22, 58, 116, 628, 792, 879
Cac8I GCNNGC 5 cut(s) 82, 243, 299, 565, 894
CfoI GCGC 2 cut(s) 140, 442
Cfr10I RCCGGY 1 cut(s) 662
Cfr13I GGNCC 4 cut(s) 360, 366, 480, 547
CseI GACGC 1 cut(s) 599
Csp6I GTAC 1 cut(s) 581
CviAII CATG 4 cut(s) 10, 89, 280, 424
CviQI GTAC 1 cut(s) 581
DpnI GATC 1 cut(s) 758
DpnII GATC 1 cut(s) 756
EciI GGCGGA 1 cut(s) 716
Ecl136II GAGCTC 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 649
Eco24I GRGCYC 1 cut(s) 243
Eco47III AGCGCT 1 cut(s) 441
Eco53kI GAGCTC 1 cut(s) 241
Eco72I CACGTG 1 cut(s) 342
Eco88I CYCGRG 2 cut(s) 476, 854
EcoICRI GAGCTC 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 633
EcoT14I CCWWGG 1 cut(s) 649
EcoT38I GRGCYC 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 649
FaeI CATG 4 cut(s) 13, 92, 283, 427
FaqI GGGAC 3 cut(s) 300, 387, 832
FatI CATG 4 cut(s) 9, 88, 279, 423
FauI CCCGC 1 cut(s) 878
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 568
FokI GGATG 6 cut(s) 9, 65, 103, 615, 799, 866
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 568
FspBI CTAG 4 cut(s) 185, 564, 749, 780
GlaI GCGC 2 cut(s) 139, 441
GluI GCNGC 1 cut(s) 568
HaeII RGCGCY 1 cut(s) 443
HaeIII GGCC 9 cut(s) 80, 127, 218, 233, 362, 368, 482, 549, 654
HgaI GACGC 1 cut(s) 599
HhaI GCGC 2 cut(s) 140, 442
Hin1II CATG 4 cut(s) 13, 92, 283, 427
Hin6I GCGC 2 cut(s) 138, 440
HinP1I GCGC 2 cut(s) 138, 440
HincII GTYRAC 2 cut(s) 494, 524
HindII GTYRAC 2 cut(s) 494, 524
HindIII AAGCTT 1 cut(s) 894
HinfI GANTC 5 cut(s) 104, 323, 474, 507, 657
HphI GGTGA 2 cut(s) 652, 904
Hpy166II GTNNAC 5 cut(s) 46, 345, 494, 524, 912
Hpy188I TCNGA 1 cut(s) 884
Hpy188III TCNNGA 1 cut(s) 722
Hpy8I GTNNAC 5 cut(s) 46, 345, 494, 524, 912
Hpy99I CGWCG 2 cut(s) 852, 906
HpyAV CCTTC 2 cut(s) 277, 363
HpyCH4III ACNGT 3 cut(s) 133, 528, 823
HpyCH4IV ACGT 2 cut(s) 48, 341
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 163, 446, 672
HpySE526I ACGT 2 cut(s) 48, 341
Hsp92II CATG 4 cut(s) 13, 92, 283, 427
HspAI GCGC 2 cut(s) 138, 440
Kzo9I GATC 1 cut(s) 756
LmnI GCTCC 2 cut(s) 355, 598
LweI GCATC 3 cut(s) 175, 637, 744
MaeI CTAG 4 cut(s) 185, 564, 749, 780
MaeII ACGT 2 cut(s) 48, 341
MalI GATC 1 cut(s) 758
MbiI CCGCTC 1 cut(s) 859
MboI GATC 1 cut(s) 756
MboII GAAGA 2 cut(s) 152, 751
MflI RGATCY 1 cut(s) 756
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 4 cut(s) 179, 403, 603, 609
MluI ACGCGT 1 cut(s) 390
MlyI GAGTC 2 cut(s) 468, 501
MmeI TCCRAC 1 cut(s) 764
MnlI CCTC 8 cut(s) 110, 151, 208, 424, 460, 763, 823, 935
MseI TTAA 1 cut(s) 395
MslI CAYNNNNRTG 1 cut(s) 710
MspR9I CCNGG 8 cut(s) 27, 330, 358, 364, 370, 512, 546, 635
MvaI CCWGG 1 cut(s) 635
MvnI CGCG 2 cut(s) 291, 392
MwoI GCNNNNNNNGC 4 cut(s) 14, 163, 446, 672
NciI CCSGG 7 cut(s) 27, 330, 358, 364, 370, 512, 546
NdeII GATC 1 cut(s) 756
NheI GCTAGC 1 cut(s) 563
NlaIII CATG 4 cut(s) 13, 92, 283, 427
NlaIV GGNNCC 6 cut(s) 334, 351, 361, 367, 481, 825
NmeAIII GCCGAG 1 cut(s) 271
NspI RCATGY 1 cut(s) 92
OliI CACNNNNGTG 1 cut(s) 710
PaeR7I CTCGAG 1 cut(s) 854
PasI CCCWGGG 1 cut(s) 634
PciI ACATGT 1 cut(s) 88
PcsI WCGNNNNNNNCGW 4 cut(s) 45, 243, 249, 652
PfeI GAWTC 3 cut(s) 104, 323, 657
PflFI GACNNNGTC 1 cut(s) 312
PkrI GCNGC 1 cut(s) 569
PleI GAGTC 2 cut(s) 468, 501
PmaCI CACGTG 1 cut(s) 342
PmlI CACGTG 1 cut(s) 342
PpsI GAGTC 2 cut(s) 468, 501
Ppu21I YACGTR 2 cut(s) 49, 342
PscI ACATGT 1 cut(s) 88
PshAI GACNNNNGTC 1 cut(s) 489
Psp124BI GAGCTC 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 633
PspCI CACGTG 1 cut(s) 342
PspGI CCWGG 1 cut(s) 633
PspN4I GGNNCC 6 cut(s) 334, 351, 361, 367, 481, 825
PspPI GGNCC 4 cut(s) 360, 366, 480, 547
PspXI VCTCGAGB 1 cut(s) 854
PsuI RGATCY 1 cut(s) 756
PsyI GACNNNGTC 1 cut(s) 312
RsaI GTAC 1 cut(s) 582
RsaNI GTAC 1 cut(s) 581
RseI CAYNNNNRTG 1 cut(s) 710
SacI GAGCTC 1 cut(s) 243
SaqAI TTAA 1 cut(s) 395
SatI GCNGC 1 cut(s) 568
Sau3AI GATC 1 cut(s) 756
Sau96I GGNCC 4 cut(s) 360, 366, 480, 547
SchI GAGTC 2 cut(s) 468, 501
ScrFI CCNGG 8 cut(s) 27, 330, 358, 364, 370, 512, 546, 635
SduI GDGCHC 1 cut(s) 243
SfaNI GCATC 3 cut(s) 175, 637, 744
Sfr274I CTCGAG 1 cut(s) 854
SlaI CTCGAG 1 cut(s) 854
SmiMI CAYNNNNRTG 1 cut(s) 710
SmlI CTYRAG 1 cut(s) 854
SmoI CTYRAG 1 cut(s) 854
Sse9I AATT 4 cut(s) 179, 403, 603, 609
SsiI CCGC 7 cut(s) 291, 567, 679, 701, 752, 859, 871
SspMI CTAG 4 cut(s) 185, 564, 749, 780
SstI GAGCTC 1 cut(s) 243
StyD4I CCNGG 8 cut(s) 25, 328, 356, 362, 368, 510, 544, 633
StyI CCWWGG 1 cut(s) 649
TaaI ACNGT 3 cut(s) 133, 528, 823
TaiI ACGT 2 cut(s) 51, 344
TasI AATT 4 cut(s) 179, 403, 603, 609
TauI GCSGC 1 cut(s) 570
TfiI GAWTC 3 cut(s) 104, 323, 657
Tru1I TTAA 1 cut(s) 395
Tru9I TTAA 1 cut(s) 395
TspDTI ATGAA 5 cut(s) 17, 216, 293, 296, 450
TspGWI ACGGA 1 cut(s) 917
Tth111I GACNNNGTC 1 cut(s) 312
XapI RAATTY 3 cut(s) 179, 603, 609
XceI RCATGY 1 cut(s) 92
XhoI CTCGAG 1 cut(s) 854
XmiI GTMKAC 1 cut(s) 45
XspI CTAG 4 cut(s) 185, 564, 749, 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.